Wall clock time and date at job start Tue Mar 31 2020 11:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47164 * 2 1 4 4 C 1.50700 * 109.47102 * 239.99887 * 2 1 3 5 5 H 1.07998 * 120.00077 * 244.88511 * 4 2 1 6 6 C 1.37882 * 119.99627 * 64.88228 * 4 2 1 7 7 N 1.31512 * 120.00149 * 5.52502 * 6 4 2 8 8 Si 1.86801 * 119.99430 * 185.52830 * 6 4 2 9 9 H 1.48499 * 109.47252 * 95.00280 * 8 6 4 10 10 H 1.48507 * 109.46559 * 214.99832 * 8 6 4 11 11 H 1.48497 * 109.47563 * 334.99550 * 8 6 4 12 12 S 1.81404 * 109.47157 * 120.00063 * 2 1 3 13 13 C 1.76201 * 102.99739 * 286.04567 * 12 2 1 14 14 C 1.38772 * 120.10934 * 0.31137 * 13 12 2 15 15 C 1.38209 * 119.99429 * 180.27924 * 14 13 12 16 16 C 1.38300 * 120.20002 * 359.74227 * 15 14 13 17 17 C 1.38256 * 120.21307 * 359.97438 * 16 15 14 18 18 C 1.38672 * 120.00212 * 0.02562 * 17 16 15 19 19 N 1.40061 * 120.09674 * 180.02562 * 18 17 16 20 20 C 1.34780 * 119.99963 * 33.81051 * 19 18 17 21 21 O 1.21702 * 119.99989 * 354.80132 * 20 19 18 22 22 C 1.46691 * 119.99439 * 174.79668 * 20 19 18 23 23 C 1.36366 * 126.63870 * 180.02562 * 22 20 19 24 24 N 1.33698 * 107.44854 * 180.02562 * 23 22 20 25 25 C 1.30613 * 108.99727 * 359.97438 * 24 23 22 26 26 O 1.33675 * 109.15752 * 0.24605 * 25 24 23 27 27 H 1.09001 * 109.46977 * 304.30976 * 1 2 3 28 28 H 1.09004 * 109.47212 * 64.31225 * 1 2 3 29 29 H 1.09001 * 109.47332 * 184.31261 * 1 2 3 30 30 H 0.97001 * 119.99407 * 180.02562 * 7 6 4 31 31 H 1.08007 * 120.00404 * 0.03769 * 14 13 12 32 32 H 1.07992 * 119.89839 * 179.71917 * 15 14 13 33 33 H 1.07993 * 119.89408 * 180.02562 * 16 15 14 34 34 H 1.07997 * 119.99375 * 180.02562 * 17 16 15 35 35 H 0.97002 * 119.99666 * 213.81456 * 19 18 17 36 36 H 1.07997 * 126.27523 * 0.02585 * 23 22 20 37 37 H 1.08003 * 125.42169 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5866 -1.6322 -1.1333 6 6 1.7842 -0.1835 -2.4802 7 7 1.2054 0.9917 -2.5953 8 14 2.2702 -1.1393 -4.0099 9 1 1.1045 -1.9196 -4.4972 10 1 2.7086 -0.1923 -5.0666 11 1 3.3838 -2.0653 -3.6821 12 16 2.1347 -0.8552 1.4811 13 6 1.8194 0.3078 2.7667 14 6 1.2286 1.5284 2.4718 15 6 0.9877 2.4412 3.4811 16 6 1.3287 2.1404 4.7872 17 6 1.9123 0.9245 5.0914 18 6 2.1580 0.0022 4.0854 19 7 2.7486 -1.2303 4.3914 20 6 2.4829 -1.8313 5.5682 21 8 1.8064 -1.2608 6.4037 22 6 3.0092 -3.1729 5.8418 23 6 2.8250 -3.9030 6.9787 24 7 3.4697 -5.0634 6.8188 25 6 4.0362 -5.0763 5.6420 26 8 3.7756 -3.9238 5.0170 27 1 -0.3633 0.5793 0.8489 28 1 -0.3634 0.4455 -0.9261 29 1 -0.3634 -1.0247 0.0773 30 1 1.0306 1.3622 -3.4746 31 1 0.9608 1.7666 1.4529 32 1 0.5320 3.3925 3.2492 33 1 1.1378 2.8571 5.5721 34 1 2.1769 0.6931 6.1126 35 1 3.3490 -1.6514 3.7564 36 1 2.2617 -3.5996 7.8488 37 1 4.6255 -5.8872 5.2398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611149755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:19 Heat of formation + Delta-G solvation = -1.120674 kcal Electronic energy + Delta-G solvation = -23174.330723 eV Core-core repulsion = 19623.023178 eV Total energy + Delta-G solvation = -3551.307545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.51051 -41.57138 -39.43899 -36.44923 -36.09550 -35.65907 -32.89635 -32.05492 -31.64688 -30.28964 -27.37655 -25.73842 -24.13018 -23.89162 -23.61799 -22.94401 -21.72111 -19.96001 -19.13595 -18.21503 -18.02469 -17.96325 -17.78794 -16.96815 -16.36190 -16.25638 -15.92817 -15.44123 -15.34980 -15.09356 -14.95150 -14.56469 -14.37812 -14.11281 -13.79616 -13.31622 -13.04807 -12.85158 -12.79700 -12.62382 -12.54813 -12.29798 -12.00816 -11.88836 -11.61139 -11.38799 -11.20798 -10.84311 -10.63181 -10.49611 -10.29376 -9.41059 -8.28266 -8.20946 -6.41279 -0.41819 0.25456 0.36080 0.79198 1.29226 1.38579 1.40966 1.42896 1.53227 1.79005 1.85687 1.97735 2.37630 2.74882 3.04727 3.22316 3.56301 3.79990 3.88018 4.15243 4.33405 4.36019 4.45458 4.49449 4.55702 4.57394 4.76496 4.82307 4.85571 5.13834 5.16261 5.21856 5.28603 5.39254 5.52868 5.55627 5.66391 5.95476 5.97138 6.05700 6.44853 6.61310 6.67668 7.25780 8.80502 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.003881 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.469811 B = 7213.332090 C = 9084.211982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.096 3.904 3 H 0.033 0.967 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.029 3.971 7 N -0.910 5.910 8 Si 0.965 3.035 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.268 1.268 12 S -0.170 6.170 13 C -0.107 4.107 14 C -0.134 4.134 15 C -0.108 4.108 16 C -0.108 4.108 17 C -0.112 4.112 18 C 0.134 3.866 19 N -0.649 5.649 20 C 0.612 3.388 21 O -0.524 6.524 22 C -0.135 4.135 23 C 0.067 3.933 24 N -0.523 5.523 25 C 0.232 3.768 26 O -0.197 6.197 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.269 0.731 31 H 0.121 0.879 32 H 0.151 0.849 33 H 0.161 0.839 34 H 0.147 0.853 35 H 0.419 0.581 36 H 0.210 0.790 37 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -5.204 15.543 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.032 4.032 3 H 0.051 0.949 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.173 4.173 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.192 1.192 12 S 0.077 5.923 13 C -0.222 4.222 14 C -0.159 4.159 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.134 4.134 18 C 0.034 3.966 19 N -0.293 5.293 20 C 0.400 3.600 21 O -0.402 6.402 22 C -0.190 4.190 23 C -0.075 4.075 24 N -0.251 5.251 25 C 0.008 3.992 26 O -0.083 6.083 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.169 0.831 33 H 0.179 0.821 34 H 0.164 0.836 35 H 0.258 0.742 36 H 0.226 0.774 37 H 0.322 0.678 Dipole moment (debyes) X Y Z Total from point charges 4.270 -6.376 16.312 18.028 hybrid contribution -0.169 1.176 -2.034 2.355 sum 4.102 -5.201 14.279 15.740 Atomic orbital electron populations 1.21910 0.95962 0.99902 1.00595 1.20860 0.95705 0.96612 0.89991 0.94926 1.20880 1.36969 1.09243 0.90076 0.92196 1.25646 0.94588 0.95516 1.01533 1.70016 1.42490 1.17094 1.25118 0.85433 0.78749 0.78486 0.78409 1.19826 1.20428 1.19194 1.84849 1.78696 1.27112 1.01669 1.21820 1.04793 0.99791 0.95803 1.21358 1.00444 0.93260 1.00802 1.21389 0.99498 0.99600 0.92367 1.21388 0.98226 0.96374 0.96949 1.21366 1.00340 0.92681 0.98985 1.17293 1.00898 0.86557 0.91821 1.43306 1.46555 1.20061 1.19346 1.16530 0.79308 0.82461 0.81681 1.90845 1.39431 1.63755 1.46173 1.22646 1.06430 0.95755 0.94174 1.23886 0.97179 0.88486 0.97986 1.70546 1.13701 1.21783 1.19100 1.29712 0.95670 0.87285 0.86527 1.84560 1.53140 1.27034 1.43574 0.94195 0.92079 0.94174 0.92199 0.86093 0.83121 0.82100 0.83575 0.74247 0.77353 0.67755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.68 71.98 0.63 -5.15 16 2 C 0.10 4.71 1.84 29.85 0.06 4.77 16 3 H 0.03 1.74 6.87 -2.39 -0.02 1.73 16 4 C -0.53 -28.31 8.52 25.60 0.22 -28.09 16 5 H 0.06 3.20 7.72 -2.91 -0.02 3.17 16 6 C 0.03 1.54 5.23 84.66 0.44 1.99 16 7 N -0.91 -49.55 11.93 21.45 0.26 -49.29 16 8 Si 0.96 41.56 29.54 68.60 2.03 43.58 16 9 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 S -0.17 -7.15 20.07 -56.49 -1.13 -8.29 16 13 C -0.11 -4.03 6.12 22.71 0.14 -3.89 16 14 C -0.13 -4.83 8.28 22.39 0.19 -4.64 16 15 C -0.11 -3.06 10.04 22.28 0.22 -2.84 16 16 C -0.11 -2.76 10.04 22.29 0.22 -2.54 16 17 C -0.11 -3.33 8.71 22.38 0.19 -3.13 16 18 C 0.13 4.50 6.34 38.24 0.24 4.74 16 19 N -0.65 -19.58 5.03 -306.55 -1.54 -21.12 16 20 C 0.61 17.45 7.64 86.45 0.66 18.11 16 21 O -0.52 -16.53 14.24 -4.36 -0.06 -16.59 16 22 C -0.13 -3.20 7.18 24.04 0.17 -3.03 16 23 C 0.07 1.41 11.66 83.97 0.98 2.39 16 24 N -0.52 -9.99 11.26 -315.06 -3.55 -13.54 16 25 C 0.23 3.15 13.21 130.42 1.72 4.88 16 26 O -0.20 -3.95 10.58 -7.14 -0.08 -4.03 16 27 H 0.04 1.68 6.05 -2.39 -0.01 1.66 16 28 H 0.06 3.08 6.60 -2.38 -0.02 3.07 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.12 4.81 4.63 -2.91 -0.01 4.80 16 32 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.15 4.15 6.10 -2.91 -0.02 4.13 16 35 H 0.42 12.14 7.73 -92.71 -0.72 11.42 16 36 H 0.21 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.31 0.36 8.06 -2.91 -0.02 0.33 16 Total: -1.00 -65.51 331.82 2.43 -63.08 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.42 Total: 22.64 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 6.08 Total: -16.44 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -4.83 Total: -83.96 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.14 Total: -20.62 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: -7.15 SS G_CDS: -1.13 Total: -8.29 kcal Total: -65.51 2.43 -63.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611149755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.960 kcal (2) G-P(sol) polarization free energy of solvation -65.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds