Wall clock time and date at job start Tue Mar 31 2020 11:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.39705 * 119.99866 * 2 1 4 4 C 1.39312 * 120.49315 * 26.28414 * 3 2 1 5 5 C 1.38496 * 118.35812 * 179.71404 * 4 3 2 6 6 C 1.38270 * 119.24218 * 0.58132 * 5 4 3 7 7 N 1.31856 * 120.92566 * 359.68064 * 6 5 4 8 8 C 1.31812 * 121.79924 * 0.02562 * 7 6 5 9 9 S 1.65598 * 119.99863 * 179.97438 * 2 1 3 10 10 O 1.42097 * 106.40582 * 344.95797 * 9 2 1 11 11 O 1.42105 * 106.40067 * 212.03310 * 9 2 1 12 12 C 1.76203 * 107.21596 * 98.50135 * 9 2 1 13 13 C 1.37638 * 120.13059 * 116.35108 * 12 9 2 14 14 C 1.38619 * 120.24516 * 180.31695 * 13 12 9 15 15 C 1.38657 * 120.50264 * 359.67321 * 14 13 12 16 16 C 1.37600 * 120.24684 * 359.97438 * 15 14 13 17 17 C 1.40704 * 120.12436 * 296.04188 * 12 9 2 18 18 C 1.41391 * 120.24285 * 359.97438 * 17 12 9 19 19 H 1.07995 * 120.00429 * 324.20378 * 18 17 12 20 20 C 1.39946 * 119.99799 * 144.19777 * 18 17 12 21 21 N 1.30827 * 120.00152 * 343.39156 * 20 18 17 22 22 Si 1.86804 * 120.00235 * 163.39058 * 20 18 17 23 23 H 1.48492 * 109.47398 * 185.05270 * 22 20 18 24 24 H 1.48496 * 109.47097 * 305.05358 * 22 20 18 25 25 H 1.48498 * 109.46747 * 65.05070 * 22 20 18 26 26 H 1.09002 * 109.47279 * 267.31001 * 1 2 3 27 27 H 1.08998 * 109.47422 * 27.30916 * 1 2 3 28 28 H 1.09000 * 109.47032 * 147.30995 * 1 2 3 29 29 H 1.08011 * 120.81874 * 359.97438 * 4 3 2 30 30 H 1.08000 * 120.37726 * 180.26415 * 5 4 3 31 31 H 1.08000 * 119.53814 * 179.70455 * 6 5 4 32 32 H 1.08006 * 119.67189 * 179.97438 * 8 7 6 33 33 H 1.07996 * 119.87877 * 0.02562 * 13 12 9 34 34 H 1.08003 * 119.74699 * 179.69634 * 14 13 12 35 35 H 1.07992 * 119.87370 * 180.02562 * 15 14 13 36 36 H 1.07999 * 120.12192 * 180.02562 * 16 15 14 37 37 H 0.97004 * 119.99512 * 354.19793 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1635 1.2099 0.0000 4 6 1.5849 2.3603 0.5316 5 6 2.3192 3.5344 0.5142 6 6 3.5875 3.5297 -0.0366 7 7 4.1050 2.4249 -0.5368 8 6 3.4429 1.2851 -0.5352 9 16 2.2930 -1.4341 0.0006 10 8 1.3536 -2.4397 0.3549 11 8 3.4945 -1.2035 0.7236 12 6 2.7692 -1.7621 -1.6638 13 6 4.1020 -1.8118 -2.0041 14 6 4.4792 -2.0631 -3.3141 15 6 3.5213 -2.2739 -4.2942 16 6 2.1833 -2.2360 -3.9753 17 6 1.7886 -1.9807 -2.6489 18 6 0.4167 -1.9392 -2.3095 19 1 0.0860 -2.3099 -1.3506 20 6 -0.5129 -1.4174 -3.2163 21 7 -0.1067 -0.6820 -4.2192 22 14 -2.3337 -1.7710 -2.9948 23 1 -3.0898 -1.2131 -4.1446 24 1 -2.5482 -3.2388 -2.9267 25 1 -2.8105 -1.1422 -1.7368 26 1 -0.3634 -0.0482 1.0265 27 1 -0.3634 0.9131 -0.4715 28 1 -0.3633 -0.8649 -0.5550 29 1 0.5897 2.3361 0.9508 30 1 1.9040 4.4443 0.9215 31 1 4.1625 4.4437 -0.0570 32 1 3.8998 0.4009 -0.9546 33 1 4.8565 -1.6497 -1.2487 34 1 5.5272 -2.0954 -3.5732 35 1 3.8266 -2.4692 -5.3115 36 1 1.4390 -2.4008 -4.7403 37 1 0.8271 -0.4283 -4.2876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:41 Heat of formation + Delta-G solvation = -14.630846 kcal Electronic energy + Delta-G solvation = -25374.322959 eV Core-core repulsion = 21822.429569 eV Total energy + Delta-G solvation = -3551.893390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.04700 -38.03611 -36.71438 -36.14646 -35.20353 -34.19033 -31.93960 -30.38912 -30.08638 -29.57678 -26.39412 -25.36042 -23.44912 -22.41862 -21.97246 -21.34048 -18.90678 -18.45185 -17.51230 -17.07249 -16.44227 -16.24299 -15.23027 -15.10385 -14.94704 -14.23052 -14.18222 -13.90984 -13.70532 -13.45117 -13.13181 -13.01245 -12.90884 -12.57324 -12.38659 -12.02414 -11.57757 -11.46274 -11.41951 -11.26195 -11.17412 -11.03227 -10.72063 -10.58050 -10.44009 -9.88079 -9.50686 -9.44403 -9.39403 -9.28317 -8.38396 -7.93569 -7.89835 -7.52175 -5.01250 1.07284 1.34686 1.49169 2.03231 2.50324 2.98216 3.04805 3.19655 3.39461 3.76311 4.00419 4.22786 4.45071 4.72103 4.84814 4.87058 5.01957 5.07951 5.11975 5.41396 5.55849 5.78046 5.78508 5.81161 5.92083 6.06150 6.14657 6.21353 6.25673 6.42713 6.49020 6.59068 6.73009 7.00767 7.09421 7.16009 7.24256 7.44058 7.51975 7.67869 7.82717 8.20085 8.22696 8.45463 9.73235 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.007317 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.298852 B = 3825.736801 C = 4592.441518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.927 5.927 3 C 0.143 3.857 4 C -0.114 4.114 5 C -0.146 4.146 6 C 0.057 3.943 7 N -0.452 5.452 8 C 0.068 3.932 9 S 2.694 3.306 10 O -0.958 6.958 11 O -0.979 6.979 12 C -0.777 4.777 13 C 0.004 3.996 14 C -0.245 4.245 15 C -0.056 4.056 16 C -0.200 4.200 17 C 0.177 3.823 18 C -0.541 4.541 19 H 0.114 0.886 20 C 0.042 3.958 21 N -0.784 5.784 22 Si 1.057 2.943 23 H -0.270 1.270 24 H -0.268 1.268 25 H -0.267 1.267 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.110 5.972 4.646 7.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.749 5.749 3 C 0.043 3.957 4 C -0.144 4.144 5 C -0.166 4.166 6 C -0.101 4.101 7 N -0.160 5.160 8 C -0.093 4.093 9 S 2.794 3.206 10 O -0.948 6.948 11 O -0.970 6.970 12 C -0.872 4.872 13 C -0.016 4.016 14 C -0.265 4.265 15 C -0.075 4.075 16 C -0.219 4.219 17 C 0.172 3.828 18 C -0.569 4.569 19 H 0.131 0.869 20 C -0.182 4.182 21 N -0.406 5.406 22 Si 0.878 3.122 23 H -0.194 1.194 24 H -0.193 1.193 25 H -0.192 1.192 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.171 0.829 32 H 0.176 0.824 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.686 5.684 4.342 7.348 hybrid contribution 0.765 -0.152 0.069 0.783 sum -0.921 5.532 4.411 7.135 Atomic orbital electron populations 1.22153 0.76772 1.06237 1.02078 1.55575 1.16017 1.19092 1.84191 1.18660 0.93430 0.87205 0.96410 1.21324 1.01188 0.91873 1.00041 1.21947 0.95771 0.98267 1.00615 1.22631 0.93701 0.96505 0.97265 1.67592 1.35387 0.98469 1.14544 1.22843 0.91367 0.97291 0.97815 1.01530 0.72286 0.71751 0.75005 1.93505 1.62947 1.54540 1.83825 1.93509 1.46401 1.85129 1.71941 1.29782 1.00968 1.33759 1.22725 1.20357 0.93382 0.91737 0.96092 1.20551 0.97803 1.14730 0.93412 1.20923 0.93644 0.95433 0.97461 1.21404 0.94974 1.08110 0.97450 1.17048 0.91769 0.83458 0.90475 1.21359 0.91954 1.36841 1.06726 0.86858 1.27102 1.07983 0.92190 0.90893 1.70458 1.22689 1.21747 1.25674 0.83755 0.72054 0.78405 0.77940 1.19415 1.19306 1.19178 0.92684 0.90785 0.87026 0.84450 0.84727 0.82875 0.82443 0.86827 0.87944 0.88199 0.87006 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.21 8.98 59.85 0.54 1.74 16 2 N -0.93 -17.85 3.33 -65.28 -0.22 -18.07 16 3 C 0.14 2.63 6.03 -83.63 -0.50 2.13 16 4 C -0.11 -1.69 9.23 -39.09 -0.36 -2.05 16 5 C -0.15 -1.86 10.10 -39.47 -0.40 -2.26 16 6 C 0.06 0.81 11.18 -17.53 -0.20 0.62 16 7 N -0.45 -8.19 10.35 -13.08 -0.14 -8.32 16 8 C 0.07 1.34 9.75 -17.32 -0.17 1.17 16 9 S 2.69 59.00 4.46 -107.50 -0.48 58.52 16 10 O -0.96 -22.46 14.83 -57.17 -0.85 -23.31 16 11 O -0.98 -22.21 14.92 -57.17 -0.85 -23.06 16 12 C -0.78 -17.92 5.32 -38.87 -0.21 -18.12 16 13 C 0.00 0.09 8.11 -39.66 -0.32 -0.23 16 14 C -0.24 -5.06 10.05 -39.29 -0.39 -5.45 16 15 C -0.06 -1.17 10.02 -39.66 -0.40 -1.57 16 16 C -0.20 -4.63 7.82 -38.87 -0.30 -4.94 16 17 C 0.18 4.28 5.14 -106.83 -0.55 3.73 16 18 C -0.54 -12.74 6.00 -37.74 -0.23 -12.96 16 19 H 0.11 2.67 4.35 -52.49 -0.23 2.44 16 20 C 0.04 0.94 5.02 -17.34 -0.09 0.85 16 21 N -0.78 -18.57 12.59 55.55 0.70 -17.87 16 22 Si 1.06 19.27 29.80 -169.99 -5.07 14.20 16 23 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 25 H -0.27 -4.39 7.11 56.52 0.40 -3.99 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.11 7.42 -51.93 -0.39 0.72 16 28 H 0.11 2.09 3.95 -51.93 -0.21 1.89 16 29 H 0.14 1.66 7.26 -52.48 -0.38 1.28 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.16 3.28 4.38 -52.48 -0.23 3.05 16 33 H 0.11 2.29 7.26 -52.49 -0.38 1.91 16 34 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.11 2.61 6.95 -52.49 -0.36 2.25 16 37 H 0.30 7.39 6.43 -40.82 -0.26 7.13 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -28.57 312.74 -9.11 -37.68 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -3.35 Total: 12.85 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: -3.58 Total: -37.33 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.35 Total: -44.26 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -1.70 Total: -46.37 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.07 Total: 14.20 kcal Atomic # 16 Polarization: 59.00 SS G_CDS: -0.48 Total: 58.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.57 -9.11 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.051 kcal (2) G-P(sol) polarization free energy of solvation -28.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds