Wall clock time and date at job start Tue Mar 31 2020 11:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.39705 * 119.99866 * 2 1 4 4 C 1.39312 * 120.49315 * 26.28414 * 3 2 1 5 5 C 1.38496 * 118.35812 * 179.71404 * 4 3 2 6 6 C 1.38270 * 119.24218 * 0.58132 * 5 4 3 7 7 N 1.31856 * 120.92566 * 359.68064 * 6 5 4 8 8 C 1.31812 * 121.79924 * 0.02562 * 7 6 5 9 9 S 1.65598 * 119.99863 * 179.97438 * 2 1 3 10 10 O 1.42097 * 106.40582 * 344.95797 * 9 2 1 11 11 O 1.42105 * 106.40067 * 212.03310 * 9 2 1 12 12 C 1.76203 * 107.21596 * 98.50135 * 9 2 1 13 13 C 1.37638 * 120.13059 * 116.35108 * 12 9 2 14 14 C 1.38619 * 120.24516 * 180.31695 * 13 12 9 15 15 C 1.38657 * 120.50264 * 359.67321 * 14 13 12 16 16 C 1.37600 * 120.24684 * 359.97438 * 15 14 13 17 17 C 1.40704 * 120.12436 * 296.04188 * 12 9 2 18 18 C 1.41391 * 120.24285 * 359.97438 * 17 12 9 19 19 H 1.07995 * 120.00429 * 324.20378 * 18 17 12 20 20 C 1.39946 * 119.99799 * 144.19777 * 18 17 12 21 21 N 1.30827 * 120.00152 * 343.39156 * 20 18 17 22 22 Si 1.86804 * 120.00235 * 163.39058 * 20 18 17 23 23 H 1.48492 * 109.47398 * 185.05270 * 22 20 18 24 24 H 1.48496 * 109.47097 * 305.05358 * 22 20 18 25 25 H 1.48498 * 109.46747 * 65.05070 * 22 20 18 26 26 H 1.09002 * 109.47279 * 267.31001 * 1 2 3 27 27 H 1.08998 * 109.47422 * 27.30916 * 1 2 3 28 28 H 1.09000 * 109.47032 * 147.30995 * 1 2 3 29 29 H 1.08011 * 120.81874 * 359.97438 * 4 3 2 30 30 H 1.08000 * 120.37726 * 180.26415 * 5 4 3 31 31 H 1.08000 * 119.53814 * 179.70455 * 6 5 4 32 32 H 1.08006 * 119.67189 * 179.97438 * 8 7 6 33 33 H 1.07996 * 119.87877 * 0.02562 * 13 12 9 34 34 H 1.08003 * 119.74699 * 179.69634 * 14 13 12 35 35 H 1.07992 * 119.87370 * 180.02562 * 15 14 13 36 36 H 1.07999 * 120.12192 * 180.02562 * 16 15 14 37 37 H 0.97004 * 119.99512 * 354.19793 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1635 1.2099 0.0000 4 6 1.5849 2.3603 0.5316 5 6 2.3192 3.5344 0.5142 6 6 3.5875 3.5297 -0.0366 7 7 4.1050 2.4249 -0.5368 8 6 3.4429 1.2851 -0.5352 9 16 2.2930 -1.4341 0.0006 10 8 1.3536 -2.4397 0.3549 11 8 3.4945 -1.2035 0.7236 12 6 2.7692 -1.7621 -1.6638 13 6 4.1020 -1.8118 -2.0041 14 6 4.4792 -2.0631 -3.3141 15 6 3.5213 -2.2739 -4.2942 16 6 2.1833 -2.2360 -3.9753 17 6 1.7886 -1.9807 -2.6489 18 6 0.4167 -1.9392 -2.3095 19 1 0.0860 -2.3099 -1.3506 20 6 -0.5129 -1.4174 -3.2163 21 7 -0.1067 -0.6820 -4.2192 22 14 -2.3337 -1.7710 -2.9948 23 1 -3.0898 -1.2131 -4.1446 24 1 -2.5482 -3.2388 -2.9267 25 1 -2.8105 -1.1422 -1.7368 26 1 -0.3634 -0.0482 1.0265 27 1 -0.3634 0.9131 -0.4715 28 1 -0.3633 -0.8649 -0.5550 29 1 0.5897 2.3361 0.9508 30 1 1.9040 4.4443 0.9215 31 1 4.1625 4.4437 -0.0570 32 1 3.8998 0.4009 -0.9546 33 1 4.8565 -1.6497 -1.2487 34 1 5.5272 -2.0954 -3.5732 35 1 3.8266 -2.4692 -5.3115 36 1 1.4390 -2.4008 -4.7403 37 1 0.8271 -0.4283 -4.2876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619572591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:40 Heat of formation + Delta-G solvation = -32.657695 kcal Electronic energy + Delta-G solvation = -25375.104662 eV Core-core repulsion = 21822.429569 eV Total energy + Delta-G solvation = -3552.675093 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.28227 -39.75484 -38.45296 -37.51295 -36.97021 -35.89675 -33.11836 -32.09769 -31.50477 -31.16578 -27.79254 -26.99997 -24.71907 -23.76349 -23.60726 -23.04224 -20.45649 -20.11314 -19.11532 -18.39168 -18.08042 -17.49950 -16.85647 -16.61833 -16.51143 -15.71784 -15.70280 -15.36662 -15.14648 -14.95751 -14.60151 -14.41558 -14.30364 -14.15357 -13.81467 -13.53092 -13.23718 -13.18834 -13.08138 -12.85838 -12.74775 -12.46572 -12.32034 -12.00534 -11.85488 -11.50219 -11.13208 -11.06649 -10.64646 -10.51034 -10.10340 -9.65548 -9.28828 -9.27059 -6.79480 -0.56918 0.13415 0.29227 0.31069 0.77489 1.50517 1.58980 1.79005 1.84490 2.26237 2.54236 2.65604 2.87820 3.19795 3.36132 3.51388 3.63292 3.84998 4.02172 4.10398 4.22277 4.26566 4.44496 4.53504 4.55664 4.64437 4.70760 4.76457 4.90407 4.99970 5.11037 5.24469 5.27600 5.36359 5.41611 5.49962 5.69164 5.75140 5.86478 5.91543 6.08117 6.48738 6.71519 6.98507 7.94602 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.007317 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.298852 B = 3825.736801 C = 4592.441518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.926 5.926 3 C 0.115 3.885 4 C -0.111 4.111 5 C -0.126 4.126 6 C 0.055 3.945 7 N -0.481 5.481 8 C 0.030 3.970 9 S 2.709 3.291 10 O -0.981 6.981 11 O -0.994 6.994 12 C -0.791 4.791 13 C -0.009 4.009 14 C -0.245 4.245 15 C -0.053 4.053 16 C -0.223 4.223 17 C 0.153 3.847 18 C -0.556 4.556 19 H 0.109 0.891 20 C 0.019 3.981 21 N -0.803 5.803 22 Si 1.090 2.910 23 H -0.269 1.269 24 H -0.266 1.266 25 H -0.235 1.235 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.169 0.831 30 H 0.187 0.813 31 H 0.192 0.808 32 H 0.133 0.867 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 8.235 5.652 10.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.750 5.750 3 C 0.015 3.985 4 C -0.140 4.140 5 C -0.146 4.146 6 C -0.103 4.103 7 N -0.189 5.189 8 C -0.129 4.129 9 S 2.808 3.192 10 O -0.971 6.971 11 O -0.985 6.985 12 C -0.885 4.885 13 C -0.029 4.029 14 C -0.264 4.264 15 C -0.072 4.072 16 C -0.243 4.243 17 C 0.149 3.851 18 C -0.584 4.584 19 H 0.126 0.874 20 C -0.199 4.199 21 N -0.425 5.425 22 Si 0.906 3.094 23 H -0.194 1.194 24 H -0.191 1.191 25 H -0.158 1.158 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.186 0.814 30 H 0.204 0.796 31 H 0.209 0.791 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.120 0.880 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.520 7.929 5.344 9.888 hybrid contribution 1.178 -0.711 -0.204 1.391 sum -1.342 7.218 5.140 8.962 Atomic orbital electron populations 1.22346 0.75536 1.06307 1.03965 1.55216 1.16697 1.18588 1.84548 1.18878 0.93442 0.87896 0.98235 1.21800 1.02506 0.90990 0.98742 1.22507 0.94570 0.99255 0.98265 1.23423 0.94842 0.96455 0.95599 1.67551 1.36370 0.99103 1.15910 1.22630 0.92661 0.97520 1.00107 1.00915 0.71853 0.72043 0.74361 1.93461 1.63407 1.56199 1.84060 1.93474 1.47310 1.85581 1.72131 1.30080 1.01481 1.33673 1.23308 1.20640 0.93352 0.91776 0.97129 1.20963 0.99443 1.13221 0.92821 1.21279 0.92817 0.93977 0.99133 1.21450 0.95915 1.09767 0.97160 1.17372 0.92565 0.84020 0.91192 1.21423 0.92170 1.37735 1.07035 0.87365 1.28239 1.10983 0.90892 0.89832 1.70557 1.21707 1.23430 1.26785 0.83401 0.68078 0.78626 0.79315 1.19361 1.19120 1.15817 0.89644 0.88825 0.89049 0.81377 0.79579 0.79076 0.84980 0.85956 0.84774 0.85069 0.88001 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.00 8.98 127.77 1.15 3.15 16 2 N -0.93 -35.59 3.33 -360.44 -1.20 -36.79 16 3 C 0.11 4.14 6.03 38.30 0.23 4.37 16 4 C -0.11 -2.91 9.23 22.59 0.21 -2.70 16 5 C -0.13 -2.64 10.10 22.34 0.23 -2.42 16 6 C 0.06 1.41 11.18 84.70 0.95 2.35 16 7 N -0.48 -17.10 10.35 -195.29 -2.02 -19.13 16 8 C 0.03 1.22 9.75 84.85 0.83 2.04 16 9 S 2.71 121.92 4.46 -56.49 -0.25 121.67 16 10 O -0.98 -47.26 14.83 -128.00 -1.90 -49.16 16 11 O -0.99 -46.54 14.92 -128.00 -1.91 -48.45 16 12 C -0.79 -37.80 5.32 22.73 0.12 -37.68 16 13 C -0.01 -0.41 8.11 22.22 0.18 -0.23 16 14 C -0.24 -10.06 10.05 22.46 0.23 -9.84 16 15 C -0.05 -2.25 10.02 22.22 0.22 -2.03 16 16 C -0.22 -10.69 7.82 22.73 0.18 -10.51 16 17 C 0.15 7.66 5.14 -21.29 -0.11 7.55 16 18 C -0.56 -26.92 6.00 23.46 0.14 -26.78 16 19 H 0.11 5.26 4.35 -2.91 -0.01 5.25 16 20 C 0.02 0.88 5.02 85.26 0.43 1.31 16 21 N -0.80 -38.97 12.59 21.83 0.27 -38.69 16 22 Si 1.09 38.19 29.80 68.60 2.04 40.23 16 23 H -0.27 -9.34 7.11 99.48 0.71 -8.64 16 24 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 25 H -0.24 -7.00 7.11 99.48 0.71 -6.29 16 26 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.09 2.61 7.42 -2.39 -0.02 2.60 16 28 H 0.09 3.40 3.95 -2.39 -0.01 3.39 16 29 H 0.17 3.28 7.26 -2.91 -0.02 3.26 16 30 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.19 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.13 5.79 4.38 -2.91 -0.01 5.78 16 33 H 0.12 5.11 7.26 -2.91 -0.02 5.09 16 34 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 35 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.10 4.97 6.95 -2.91 -0.02 4.95 16 37 H 0.29 14.65 6.43 -92.71 -0.60 14.05 16 Total: -1.00 -65.61 312.74 1.31 -64.31 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: 1.30 Total: 37.42 kcal Atomic # 6 Polarization: -76.39 SS G_CDS: 4.97 Total: -71.42 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -2.95 Total: -94.60 kcal Atomic # 8 Polarization: -93.80 SS G_CDS: -3.81 Total: -97.61 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.04 Total: 40.23 kcal Atomic # 16 Polarization: 121.92 SS G_CDS: -0.25 Total: 121.67 kcal Total: -65.61 1.31 -64.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.648 kcal (2) G-P(sol) polarization free energy of solvation -65.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds