Wall clock time and date at job start Tue Mar 31 2020 11:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21635 * 120.00201 * 359.97438 * 13 12 2 15 15 C 1.47304 * 120.00159 * 179.97438 * 13 12 2 16 16 C 1.35157 * 122.42825 * 179.73823 * 15 13 12 17 17 S 1.71011 * 109.11911 * 179.86381 * 16 15 13 18 18 C 1.75998 * 90.58091 * 0.32478 * 17 16 15 19 19 C 1.47857 * 125.31676 * 179.82780 * 18 17 16 20 20 C 1.39578 * 120.07863 * 179.70175 * 19 18 17 21 21 C 1.37841 * 119.91088 * 179.74504 * 20 19 18 22 22 C 1.38882 * 120.08300 * 0.50760 * 21 20 19 23 23 O 1.35837 * 119.91455 * 179.74502 * 22 21 20 24 24 C 1.38876 * 120.16981 * 359.77073 * 22 21 20 25 25 C 1.37839 * 120.08308 * 359.97438 * 24 22 21 26 26 N 1.29866 * 109.36273 * 359.80613 * 18 17 16 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 31 31 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 32 32 H 1.08000 * 125.44360 * 0.02562 * 16 15 13 33 33 H 1.07999 * 120.04797 * 359.97438 * 20 19 18 34 34 H 1.08000 * 119.95658 * 180.23548 * 21 20 19 35 35 H 0.96705 * 114.00313 * 270.02517 * 23 22 21 36 36 H 1.07996 * 119.96084 * 179.97438 * 24 22 21 37 37 H 1.07998 * 120.04079 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8582 1.1619 2.4117 15 6 2.6377 -0.7129 3.5599 16 6 2.7904 -0.0857 4.7473 17 16 3.3716 -1.2056 5.9017 18 6 3.3839 -2.4788 4.6866 19 6 3.8033 -3.8776 4.9185 20 6 3.7635 -4.8022 3.8737 21 6 4.1602 -6.1040 4.0924 22 6 4.5891 -6.4986 5.3530 23 8 4.9744 -7.7837 5.5660 24 6 4.6246 -5.5829 6.3965 25 6 4.2344 -4.2781 6.1842 26 7 2.9667 -1.9979 3.5548 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7093 1.1619 -3.4844 31 1 2.2491 -1.6318 1.1525 32 1 2.5767 0.9558 4.9376 33 1 3.4258 -4.4972 2.8942 34 1 4.1333 -6.8191 3.2835 35 1 4.2561 -8.3690 5.8429 36 1 4.9583 -5.8935 7.3755 37 1 4.2627 -3.5664 6.9961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728604233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:43 Heat of formation + Delta-G solvation = -37.892568 kcal Electronic energy + Delta-G solvation = -22707.086442 eV Core-core repulsion = 19154.184348 eV Total energy + Delta-G solvation = -3552.902094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55238 -40.64282 -39.58505 -37.66212 -36.80404 -34.36958 -32.80666 -32.10124 -31.01577 -29.98126 -27.40895 -26.73507 -24.75487 -23.86581 -22.74730 -21.77668 -20.65673 -19.91100 -19.37193 -18.53339 -17.69606 -17.27937 -16.95290 -16.49280 -16.45943 -16.33589 -16.08970 -15.35907 -15.08466 -14.88410 -14.57360 -14.44664 -14.32134 -13.79109 -13.47257 -13.21125 -13.05585 -13.01019 -12.92767 -12.89400 -12.78308 -12.32673 -12.15730 -11.44859 -11.17514 -11.14053 -11.01523 -10.93207 -10.64438 -10.35791 -10.04906 -9.85061 -9.12884 -8.21046 -6.38765 -0.90304 0.10423 0.12591 0.34637 0.42538 1.11345 1.42811 1.43240 1.56283 2.29554 2.33236 2.50424 2.69946 2.83820 3.09229 3.27685 3.67512 3.91301 3.97925 4.10182 4.17137 4.31807 4.45316 4.64788 4.73860 4.78483 4.87038 5.02410 5.03327 5.23538 5.35677 5.37144 5.41770 5.53503 5.61743 5.74673 5.81980 6.03602 6.34630 6.66746 6.85824 6.87314 7.23428 7.39151 8.85892 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.003322 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.044565 B = 8427.655547 C =10304.262219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H 0.004 0.996 4 C -0.550 4.550 5 H 0.069 0.931 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.975 3.025 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.280 1.280 12 N -0.686 5.686 13 C 0.570 3.430 14 O -0.589 6.589 15 C -0.002 4.002 16 C -0.227 4.227 17 S 0.273 5.727 18 C 0.077 3.923 19 C -0.053 4.053 20 C -0.068 4.068 21 C -0.152 4.152 22 C 0.125 3.875 23 O -0.507 6.507 24 C -0.140 4.140 25 C -0.075 4.075 26 N -0.458 5.458 27 H 0.013 0.987 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.267 0.733 31 H 0.406 0.594 32 H 0.196 0.804 33 H 0.127 0.873 34 H 0.144 0.856 35 H 0.415 0.585 36 H 0.163 0.837 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.975 -16.119 22.709 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.022 0.978 4 C -0.588 4.588 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.799 3.201 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.206 1.206 12 N -0.333 5.333 13 C 0.354 3.646 14 O -0.471 6.471 15 C -0.138 4.138 16 C -0.370 4.370 17 S 0.533 5.467 18 C -0.198 4.198 19 C -0.057 4.057 20 C -0.089 4.089 21 C -0.171 4.171 22 C 0.079 3.921 23 O -0.321 6.321 24 C -0.159 4.159 25 C -0.095 4.095 26 N -0.173 5.173 27 H 0.033 0.967 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.242 0.758 32 H 0.213 0.787 33 H 0.145 0.855 34 H 0.162 0.838 35 H 0.276 0.724 36 H 0.180 0.820 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.416 -15.165 23.014 28.541 hybrid contribution -0.746 0.167 -2.023 2.163 sum 6.670 -14.998 20.991 26.647 Atomic orbital electron populations 1.21899 0.97884 0.99507 0.99876 1.18479 0.91437 0.92024 0.81461 0.97834 1.21521 1.32825 1.13601 0.90825 0.91328 1.25797 0.94746 0.95582 1.02239 1.70043 1.36814 1.23781 1.24734 0.85254 0.78199 0.78466 0.78164 1.18682 1.20027 1.20629 1.46205 1.63379 1.14383 1.09329 1.17740 0.77880 0.85790 0.83140 1.90726 1.53989 1.16764 1.85587 1.19977 1.08371 0.90029 0.95437 1.26824 1.05260 1.08024 0.96898 1.83062 1.56132 0.96962 1.10546 1.26237 1.02915 0.99289 0.91387 1.17927 1.04409 0.87483 0.95862 1.21219 0.96441 0.92377 0.98894 1.21560 1.00682 0.96524 0.98333 1.18745 0.95207 0.85787 0.92341 1.84748 1.39770 1.17305 1.90324 1.21543 1.01306 0.92606 1.00402 1.21220 0.96579 0.96905 0.94794 1.66889 1.13610 1.10504 1.26330 0.96743 0.94254 0.90903 0.92342 0.75829 0.78690 0.85522 0.83789 0.72425 0.81975 0.82983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.10 9.26 71.98 0.67 -6.43 16 2 C 0.27 14.90 2.56 44.25 0.11 15.02 16 3 H 0.00 0.24 7.58 -2.39 -0.02 0.22 16 4 C -0.55 -30.75 8.73 25.60 0.22 -30.53 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -53.56 11.32 21.45 0.24 -53.31 16 8 Si 0.98 43.25 29.54 68.60 2.03 45.28 16 9 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 N -0.69 -32.74 5.07 -449.48 -2.28 -35.01 16 13 C 0.57 26.21 7.76 86.63 0.67 26.88 16 14 O -0.59 -30.78 16.31 -4.14 -0.07 -30.85 16 15 C 0.00 -0.08 6.64 40.70 0.27 0.19 16 16 C -0.23 -6.37 10.56 67.11 0.71 -5.66 16 17 S 0.27 5.01 22.12 -56.49 -1.25 3.76 16 18 C 0.08 1.90 7.32 87.53 0.64 2.54 16 19 C -0.05 -1.07 5.87 -20.08 -0.12 -1.19 16 20 C -0.07 -1.43 9.67 22.50 0.22 -1.21 16 21 C -0.15 -2.58 9.97 22.33 0.22 -2.35 16 22 C 0.13 1.75 6.71 22.58 0.15 1.91 16 23 O -0.51 -5.69 13.49 -91.72 -1.24 -6.92 16 24 C -0.14 -1.63 9.97 22.33 0.22 -1.41 16 25 C -0.07 -1.02 9.59 22.50 0.22 -0.80 16 26 N -0.46 -14.81 9.61 -179.58 -1.73 -16.53 16 27 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 4.17 6.07 -2.38 -0.01 4.15 16 30 H 0.27 14.65 8.31 -92.71 -0.77 13.87 16 31 H 0.41 17.80 8.01 -92.71 -0.74 17.05 16 32 H 0.20 5.14 7.99 -2.91 -0.02 5.12 16 33 H 0.13 3.04 7.81 -2.91 -0.02 3.02 16 34 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.42 0.51 9.06 -74.05 -0.67 -0.17 16 36 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.15 1.28 7.28 -2.91 -0.02 1.26 16 Total: -1.00 -74.67 340.94 0.10 -74.57 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -0.27 Total: 20.71 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 4.66 Total: -1.68 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -3.76 Total: -104.86 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -1.31 Total: -37.77 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -1.25 Total: 3.76 kcal Total: -74.67 0.10 -74.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728604233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.679 kcal (2) G-P(sol) polarization free energy of solvation -74.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds