Wall clock time and date at job start Tue Mar 31 2020 11:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47110 * 2 1 4 4 C 1.36940 * 119.99517 * 97.69589 * 3 2 1 5 5 H 1.07999 * 119.99515 * 159.42952 * 4 3 2 6 6 C 1.38969 * 120.00340 * 339.70064 * 4 3 2 7 7 N 1.31411 * 120.00299 * 358.29347 * 6 4 3 8 8 Si 1.86802 * 120.00132 * 178.29432 * 6 4 3 9 9 H 1.48498 * 109.47223 * 89.99881 * 8 6 4 10 10 H 1.48504 * 109.47284 * 209.99891 * 8 6 4 11 11 H 1.48499 * 109.47232 * 329.99764 * 8 6 4 12 12 C 1.34774 * 120.00028 * 277.69013 * 3 2 1 13 13 O 1.21663 * 120.00066 * 176.66993 * 12 3 2 14 14 C 1.47201 * 120.00055 * 356.67757 * 12 3 2 15 15 C 1.36271 * 122.55917 * 188.06065 * 14 12 3 16 16 S 1.71011 * 109.02000 * 179.89431 * 15 14 12 17 17 C 1.75975 * 90.65059 * 0.30381 * 16 15 14 18 18 C 1.47836 * 125.22212 * 179.85452 * 17 16 15 19 19 C 1.39589 * 120.08359 * 179.68397 * 18 17 16 20 20 C 1.37833 * 119.90693 * 179.72400 * 19 18 17 21 21 C 1.38884 * 120.09079 * 0.55121 * 20 19 18 22 22 O 1.35835 * 119.91547 * 179.70464 * 21 20 19 23 23 C 1.38882 * 120.16384 * 359.72013 * 21 20 19 24 24 C 1.37822 * 120.08872 * 0.02562 * 23 21 20 25 25 N 1.29821 * 109.55752 * 359.81995 * 17 16 15 26 26 H 1.09000 * 109.47635 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46919 * 299.99787 * 1 2 3 28 28 H 1.08999 * 109.47298 * 59.99240 * 1 2 3 29 29 H 1.09007 * 109.46667 * 240.00459 * 2 1 3 30 30 H 1.08995 * 109.46895 * 120.00479 * 2 1 3 31 31 H 0.96996 * 120.00750 * 180.02562 * 7 6 4 32 32 H 1.07990 * 125.49402 * 359.97438 * 15 14 12 33 33 H 1.07995 * 120.04264 * 359.97438 * 19 18 17 34 34 H 1.08006 * 119.95153 * 180.25568 * 20 19 18 35 35 H 0.96705 * 113.99778 * 270.01786 * 22 21 20 36 36 H 1.08000 * 119.95240 * 179.97438 * 23 21 20 37 37 H 1.08004 * 120.04820 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3963 1.9738 1.1753 5 1 3.0499 2.8334 1.1608 6 6 1.9434 1.4655 2.3868 7 7 1.1256 0.4370 2.4034 8 14 2.4970 2.2444 3.9919 9 1 1.5481 3.3212 4.3728 10 1 2.5278 1.2116 5.0586 11 1 3.8554 2.8194 3.8205 12 6 2.0957 2.0686 -1.1567 13 8 2.4435 3.2345 -1.1494 14 6 1.7594 1.4089 -2.4288 15 6 1.9707 1.9985 -3.6391 16 16 1.4614 0.9321 -4.8751 17 6 0.9776 -0.2602 -3.6747 18 6 0.3845 -1.5806 -3.9753 19 6 0.0455 -2.4484 -2.9358 20 6 -0.5125 -3.6763 -3.2200 21 6 -0.7271 -4.0552 -4.5388 22 8 -1.2717 -5.2685 -4.8150 23 6 -0.3859 -3.1967 -5.5759 24 6 0.1677 -1.9652 -5.2996 25 7 1.2222 0.1973 -2.4846 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.8092 0.0824 3.2490 32 1 2.3930 2.9805 -3.7929 33 1 0.2165 -2.1565 -1.9102 34 1 -0.7789 -4.3466 -2.4161 35 1 -0.6215 -5.9759 -4.9239 36 1 -0.5538 -3.4950 -6.6002 37 1 0.4324 -1.2980 -6.1066 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735878175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:41 Heat of formation + Delta-G solvation = 23.465245 kcal Electronic energy + Delta-G solvation = -23901.979707 eV Core-core repulsion = 20351.738287 eV Total energy + Delta-G solvation = -3550.241420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10715 -39.51508 -37.65027 -36.72566 -35.09624 -31.79410 -31.40579 -31.22209 -29.31914 -28.61549 -26.03502 -24.49888 -23.07230 -22.76422 -21.92517 -20.38275 -18.79575 -18.60472 -18.05271 -16.74474 -16.46543 -15.56771 -15.53628 -15.39439 -14.82396 -14.60501 -14.27191 -13.90958 -13.65923 -13.35104 -13.24166 -12.73781 -12.62585 -12.35979 -12.17021 -12.10428 -11.67226 -11.48314 -11.22698 -11.06797 -10.73329 -10.60099 -10.38049 -10.13253 -10.01424 -9.61226 -9.19235 -9.17214 -9.00226 -8.77793 -8.51805 -7.93803 -7.61636 -6.28803 -3.89846 0.33469 1.21834 1.40122 1.49346 1.93832 2.68111 3.18013 3.22536 3.27082 3.58712 3.98890 4.04029 4.14311 4.35666 4.76626 4.79795 4.91690 5.15051 5.17823 5.26010 5.43072 5.59544 5.68948 5.82204 5.88343 6.06318 6.23968 6.31433 6.40860 6.59070 6.69779 6.86673 6.95289 7.14445 7.39282 7.42566 7.57857 7.84958 7.89151 8.11013 8.52467 9.11913 9.38143 9.96319 10.60636 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.004126 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.586539 B = 6784.393681 C = 8386.333978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.116 3.884 3 N -0.409 5.409 4 C -0.293 4.293 5 H 0.102 0.898 6 C 0.028 3.972 7 N -0.863 5.863 8 Si 0.933 3.067 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.492 3.508 13 O -0.595 6.595 14 C 0.052 3.948 15 C -0.234 4.234 16 S 0.123 5.877 17 C 0.071 3.929 18 C -0.020 4.020 19 C -0.057 4.057 20 C -0.143 4.143 21 C 0.111 3.889 22 O -0.500 6.500 23 C -0.145 4.145 24 C -0.087 4.087 25 N -0.405 5.405 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.268 0.732 32 H 0.184 0.816 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.390 0.610 36 H 0.132 0.868 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.372 -11.005 -14.117 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.007 4.007 3 N -0.124 5.124 4 C -0.422 4.422 5 H 0.119 0.881 6 C -0.175 4.175 7 N -0.502 5.502 8 Si 0.760 3.240 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.278 3.722 13 O -0.482 6.482 14 C -0.083 4.083 15 C -0.376 4.376 16 S 0.380 5.620 17 C -0.204 4.204 18 C -0.024 4.024 19 C -0.079 4.079 20 C -0.162 4.162 21 C 0.065 3.935 22 O -0.310 6.310 23 C -0.163 4.163 24 C -0.108 4.108 25 N -0.120 5.120 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.201 0.799 33 H 0.164 0.836 34 H 0.152 0.848 35 H 0.247 0.753 36 H 0.150 0.850 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.920 -10.456 -14.490 18.106 hybrid contribution 0.723 0.494 1.524 1.757 sum -2.197 -9.962 -12.966 16.498 Atomic orbital electron populations 1.21901 0.96764 0.99024 1.00603 1.21877 0.94736 0.82646 1.01401 1.43749 1.51702 1.11783 1.05147 1.19838 1.26646 1.13489 0.82229 0.88050 1.25430 0.95725 0.96523 0.99852 1.70095 1.30722 1.22704 1.26714 0.85809 0.79289 0.78613 0.80304 1.20213 1.20752 1.19369 1.16864 0.87170 0.85975 0.82192 1.90624 1.55448 1.16014 1.86087 1.21029 1.01304 0.89792 0.96190 1.26560 1.09579 1.06499 0.95010 1.83310 1.56984 1.09374 1.12283 1.26038 1.05051 0.98744 0.90526 1.17854 1.00653 0.90246 0.93621 1.21356 0.94505 0.91783 1.00225 1.21427 1.00674 0.97857 0.96226 1.18612 0.95939 0.86947 0.91986 1.84803 1.36239 1.16955 1.93030 1.21208 1.00918 0.94763 0.99419 1.20999 0.98478 0.96268 0.95027 1.67628 1.12062 1.11291 1.21029 0.95017 0.90638 0.95690 0.92127 0.88065 0.92143 0.79900 0.83568 0.84764 0.75350 0.84994 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 8.99 37.16 0.33 -2.47 16 2 C 0.12 2.76 4.86 -4.04 -0.02 2.74 16 3 N -0.41 -10.92 2.64 -116.11 -0.31 -11.22 16 4 C -0.29 -8.19 9.35 -15.00 -0.14 -8.33 16 5 H 0.10 2.94 7.37 -52.49 -0.39 2.55 16 6 C 0.03 0.73 5.30 -17.46 -0.09 0.63 16 7 N -0.86 -21.98 7.93 55.50 0.44 -21.54 16 8 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 C 0.49 12.92 7.52 -12.62 -0.09 12.82 16 13 O -0.60 -17.21 16.39 5.22 0.09 -17.12 16 14 C 0.05 1.13 6.32 -84.58 -0.53 0.59 16 15 C -0.23 -4.23 10.63 30.02 0.32 -3.91 16 16 S 0.12 1.69 22.10 -107.50 -2.38 -0.68 16 17 C 0.07 1.14 7.31 -14.48 -0.11 1.03 16 18 C -0.02 -0.27 5.87 -104.96 -0.62 -0.89 16 19 C -0.06 -0.76 9.67 -39.23 -0.38 -1.14 16 20 C -0.14 -1.61 9.97 -39.49 -0.39 -2.00 16 21 C 0.11 1.14 6.71 -39.10 -0.26 0.88 16 22 O -0.50 -4.39 13.49 -19.22 -0.26 -4.65 16 23 C -0.14 -1.40 9.97 -39.50 -0.39 -1.80 16 24 C -0.09 -0.95 9.59 -39.23 -0.38 -1.32 16 25 N -0.40 -7.85 4.59 -7.91 -0.04 -7.89 16 26 H 0.03 0.62 7.74 -51.93 -0.40 0.22 16 27 H 0.07 1.90 6.30 -51.93 -0.33 1.57 16 28 H 0.02 0.56 6.68 -51.93 -0.35 0.21 16 29 H 0.06 1.35 5.42 -51.92 -0.28 1.07 16 30 H 0.10 2.55 5.83 -51.93 -0.30 2.25 16 31 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 32 H 0.18 3.16 8.02 -52.49 -0.42 2.74 16 33 H 0.15 2.14 7.36 -52.49 -0.39 1.75 16 34 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.39 1.49 9.06 45.56 0.41 1.90 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.13 1.16 7.27 -52.48 -0.38 0.78 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -32.01 325.56 -8.13 -40.14 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -2.80 Total: 5.83 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.76 Total: -3.16 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.10 Total: -40.65 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.17 Total: -21.77 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.38 Total: -0.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.01 -8.13 -40.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735878175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.602 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds