Wall clock time and date at job start Tue Mar 31 2020 11:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31858 * 122.84922 * 2 1 4 4 C 1.28919 * 117.19396 * 180.02562 * 3 2 1 5 5 S 1.70956 * 110.31384 * 359.72526 * 4 3 2 6 6 C 1.34368 * 122.84581 * 180.02562 * 2 1 3 7 7 N 1.39790 * 126.06929 * 359.97333 * 6 2 1 8 8 C 1.34783 * 119.99740 * 180.02562 * 7 6 2 9 9 O 1.21308 * 119.99941 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00059 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.47151 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96224 * 270.02423 * 11 10 8 13 13 C 1.38279 * 120.13490 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06774 * 359.77134 * 13 12 11 15 15 C 1.38852 * 119.93464 * 0.50144 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.74702 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47063 * 60.00398 * 21 19 17 23 23 H 1.48498 * 109.47240 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47319 * 300.00306 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99818 * 11 10 8 26 26 H 1.08994 * 109.46970 * 269.97208 * 1 2 3 27 27 H 1.08996 * 109.47505 * 29.97692 * 1 2 3 28 28 H 1.09008 * 109.47176 * 149.97676 * 1 2 3 29 29 H 1.08007 * 124.84378 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00448 * 0.02562 * 7 6 2 31 31 H 1.09004 * 109.46756 * 60.00007 * 10 8 7 32 32 H 1.08998 * 109.46908 * 300.00650 * 10 8 7 33 33 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 34 34 H 1.07999 * 119.96467 * 180.02562 * 13 12 11 35 35 H 1.08001 * 120.03298 * 180.27571 * 14 13 12 36 36 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 37 37 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2223 1.1077 0.0000 4 6 3.5052 0.9807 -0.0005 5 16 3.9378 -0.6732 0.0066 6 6 2.2358 -1.1289 -0.0005 7 7 1.7329 -2.4332 -0.0006 8 6 2.5796 -3.4819 -0.0006 9 8 3.7781 -3.2938 -0.0001 10 6 2.0376 -4.8880 -0.0001 11 6 3.1826 -5.8678 0.0005 12 6 3.7079 -6.3170 -1.1977 13 6 4.7589 -7.2156 -1.2014 14 6 5.2905 -7.6638 -0.0079 15 6 4.7616 -7.2190 1.1964 16 8 5.2785 -7.6616 2.3711 17 6 6.2222 -8.6221 2.3013 18 1 6.5926 -8.9464 1.3401 19 6 6.7171 -9.1934 3.4637 20 7 6.2656 -8.7987 4.6346 21 14 8.0240 -10.5246 3.3671 22 1 9.2308 -9.9853 2.6904 23 1 8.3815 -10.9679 4.7385 24 1 7.4983 -11.6793 2.5954 25 6 3.7065 -6.3156 1.1969 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3634 0.8901 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 4.2066 1.8020 -0.0010 30 1 0.7746 -2.5836 -0.0006 31 1 1.4271 -5.0423 -0.8899 32 1 1.4277 -5.0419 0.8901 33 1 3.2964 -5.9652 -2.1322 34 1 5.1673 -7.5643 -2.1385 35 1 6.1142 -8.3622 -0.0115 36 1 6.6116 -9.1986 5.4477 37 1 3.2956 -5.9648 2.1320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760562071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:02 Heat of formation + Delta-G solvation = 8.328802 kcal Electronic energy + Delta-G solvation = -22760.964108 eV Core-core repulsion = 19210.066323 eV Total energy + Delta-G solvation = -3550.897785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60676 -39.62035 -38.84579 -36.59019 -35.18589 -32.53498 -32.15535 -31.32653 -29.29838 -28.02865 -26.49546 -25.26156 -24.68262 -22.02403 -21.58987 -20.71918 -19.95630 -18.22678 -17.74059 -17.29218 -16.91355 -16.49862 -15.94586 -15.14553 -14.87458 -14.66294 -14.39594 -14.30996 -13.93239 -13.64136 -13.53610 -13.51395 -12.82448 -12.70547 -12.68805 -12.49421 -12.03525 -11.62849 -11.39737 -11.33952 -11.30080 -10.89409 -10.82990 -10.67096 -10.47737 -10.29227 -9.52334 -9.36467 -9.07455 -8.84142 -8.23449 -8.13448 -7.25168 -6.44641 -4.03940 0.62137 1.05996 1.75819 2.01126 2.28898 2.35324 2.79191 2.83870 3.13371 3.14429 3.17040 3.96434 4.17651 4.41978 4.69418 4.80055 4.95268 5.01662 5.04520 5.12513 5.27106 5.35091 5.37782 5.55733 5.63746 5.69530 5.79265 5.88406 6.13299 6.14470 6.29661 6.60060 6.86098 6.90675 7.04526 7.19845 7.33762 7.41504 7.64688 7.78086 7.79933 7.99921 9.00874 9.70677 10.73388 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.021886 B = 0.002690 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.022229 B =10406.570988 C =10834.328236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.003 4.003 3 N -0.450 5.450 4 C -0.051 4.051 5 S 0.243 5.757 6 C 0.004 3.996 7 N -0.634 5.634 8 C 0.504 3.496 9 O -0.483 6.483 10 C -0.085 4.085 11 C -0.040 4.040 12 C -0.195 4.195 13 C -0.074 4.074 14 C -0.228 4.228 15 C 0.155 3.845 16 O -0.178 6.178 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.040 3.960 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.173 4.173 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.196 0.804 30 H 0.417 0.583 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.270 0.730 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.734 13.018 -10.513 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.139 4.139 3 N -0.164 5.164 4 C -0.349 4.349 5 S 0.493 5.507 6 C -0.215 4.215 7 N -0.282 5.282 8 C 0.291 3.709 9 O -0.355 6.355 10 C -0.124 4.124 11 C -0.040 4.040 12 C -0.215 4.215 13 C -0.092 4.092 14 C -0.247 4.247 15 C 0.101 3.899 16 O -0.082 6.082 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.192 4.192 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.212 0.788 30 H 0.256 0.744 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.145 0.855 36 H 0.080 0.920 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.103 13.088 -10.000 18.819 hybrid contribution -0.640 -0.629 -0.076 0.900 sum -9.742 12.459 -10.076 18.753 Atomic orbital electron populations 1.20203 0.87332 1.02887 1.02612 1.20056 0.98068 0.85390 1.10373 1.66148 1.05440 1.30468 1.14353 1.28463 0.95512 1.03014 1.07860 1.85190 1.00374 0.98359 1.66740 1.23574 0.98465 0.89023 1.10430 1.43112 1.11024 1.01567 1.72465 1.21366 0.86914 0.87006 0.75595 1.90729 1.14963 1.84292 1.45519 1.20529 0.98376 0.88268 1.05262 1.18574 0.95865 0.96291 0.93309 1.20341 1.01413 1.03761 0.95937 1.20682 0.95448 0.96213 0.96864 1.21197 1.04666 1.06756 0.92105 1.19261 0.91443 0.92587 0.86613 1.83976 1.49801 1.49667 1.24708 1.21272 1.16070 1.14826 0.94679 0.89138 1.25277 0.98614 0.98387 0.94181 1.70025 1.41335 1.41005 0.97468 0.85789 0.79901 0.79898 0.77893 1.19491 1.20278 1.19507 1.19939 0.99266 1.02903 0.97103 0.90948 0.90462 0.91628 0.78765 0.74437 0.87644 0.87495 0.87886 0.87387 0.85546 0.91980 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.07 36.01 0.36 -0.19 16 2 C 0.00 -0.03 6.77 -83.95 -0.57 -0.60 16 3 N -0.45 -5.63 10.53 -11.74 -0.12 -5.76 16 4 C -0.05 -0.56 12.21 51.54 0.63 0.07 16 5 S 0.24 3.06 20.47 -107.50 -2.20 0.86 16 6 C 0.00 0.04 7.18 -15.28 -0.11 -0.07 16 7 N -0.63 -6.51 5.40 -10.60 -0.06 -6.57 16 8 C 0.50 6.65 7.79 -10.98 -0.09 6.56 16 9 O -0.48 -8.42 13.67 5.53 0.08 -8.35 16 10 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 11 C -0.04 -0.68 4.37 -104.65 -0.46 -1.14 16 12 C -0.20 -3.33 9.70 -39.53 -0.38 -3.71 16 13 C -0.07 -1.36 10.04 -39.61 -0.40 -1.76 16 14 C -0.23 -4.99 9.17 -39.40 -0.36 -5.35 16 15 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 16 O -0.18 -5.11 9.76 0.05 0.00 -5.11 16 17 C -0.39 -11.01 9.49 30.89 0.29 -10.71 16 18 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 21 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 C -0.17 -3.62 9.65 -39.39 -0.38 -4.00 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.36 7.21 -51.92 -0.37 -0.01 16 29 H 0.20 1.50 8.06 -52.48 -0.42 1.07 16 30 H 0.42 2.67 7.62 -40.82 -0.31 2.36 16 31 H 0.11 0.88 8.09 -51.93 -0.42 0.46 16 32 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 337.43 15.07 5.09 5.09 Total: -1.00 -35.01 337.43 -7.23 -42.24 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.77 Total: 4.26 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -1.98 Total: -17.55 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.58 Total: -36.96 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.46 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.20 Total: 0.86 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.01 -7.23 -42.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760562071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.572 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds