Wall clock time and date at job start Tue Mar 31 2020 11:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31858 * 122.84922 * 2 1 4 4 C 1.28919 * 117.19396 * 180.02562 * 3 2 1 5 5 S 1.70956 * 110.31384 * 359.72526 * 4 3 2 6 6 C 1.34368 * 122.84581 * 180.02562 * 2 1 3 7 7 N 1.39790 * 126.06929 * 359.97333 * 6 2 1 8 8 C 1.34783 * 119.99740 * 180.02562 * 7 6 2 9 9 O 1.21308 * 119.99941 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00059 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.47151 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96224 * 270.02423 * 11 10 8 13 13 C 1.38279 * 120.13490 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06774 * 359.77134 * 13 12 11 15 15 C 1.38852 * 119.93464 * 0.50144 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.74702 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47063 * 60.00398 * 21 19 17 23 23 H 1.48498 * 109.47240 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47319 * 300.00306 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99818 * 11 10 8 26 26 H 1.08994 * 109.46970 * 269.97208 * 1 2 3 27 27 H 1.08996 * 109.47505 * 29.97692 * 1 2 3 28 28 H 1.09008 * 109.47176 * 149.97676 * 1 2 3 29 29 H 1.08007 * 124.84378 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00448 * 0.02562 * 7 6 2 31 31 H 1.09004 * 109.46756 * 60.00007 * 10 8 7 32 32 H 1.08998 * 109.46908 * 300.00650 * 10 8 7 33 33 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 34 34 H 1.07999 * 119.96467 * 180.02562 * 13 12 11 35 35 H 1.08001 * 120.03298 * 180.27571 * 14 13 12 36 36 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 37 37 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2223 1.1077 0.0000 4 6 3.5052 0.9807 -0.0005 5 16 3.9378 -0.6732 0.0066 6 6 2.2358 -1.1289 -0.0005 7 7 1.7329 -2.4332 -0.0006 8 6 2.5796 -3.4819 -0.0006 9 8 3.7781 -3.2938 -0.0001 10 6 2.0376 -4.8880 -0.0001 11 6 3.1826 -5.8678 0.0005 12 6 3.7079 -6.3170 -1.1977 13 6 4.7589 -7.2156 -1.2014 14 6 5.2905 -7.6638 -0.0079 15 6 4.7616 -7.2190 1.1964 16 8 5.2785 -7.6616 2.3711 17 6 6.2222 -8.6221 2.3013 18 1 6.5926 -8.9464 1.3401 19 6 6.7171 -9.1934 3.4637 20 7 6.2656 -8.7987 4.6346 21 14 8.0240 -10.5246 3.3671 22 1 9.2308 -9.9853 2.6904 23 1 8.3815 -10.9679 4.7385 24 1 7.4983 -11.6793 2.5954 25 6 3.7065 -6.3156 1.1969 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3634 0.8901 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 4.2066 1.8020 -0.0010 30 1 0.7746 -2.5836 -0.0006 31 1 1.4271 -5.0423 -0.8899 32 1 1.4277 -5.0419 0.8901 33 1 3.2964 -5.9652 -2.1322 34 1 5.1673 -7.5643 -2.1385 35 1 6.1142 -8.3622 -0.0115 36 1 6.6116 -9.1986 5.4477 37 1 3.2956 -5.9648 2.1320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760562071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:01 Heat of formation + Delta-G solvation = -16.388813 kcal Electronic energy + Delta-G solvation = -22762.035944 eV Core-core repulsion = 19210.066323 eV Total energy + Delta-G solvation = -3551.969621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60779 -40.79482 -40.29642 -38.25184 -36.16950 -34.35321 -33.60983 -32.16768 -30.90527 -29.18033 -27.62445 -27.11080 -25.57132 -23.39738 -23.06333 -21.99216 -20.94699 -19.49636 -19.17585 -18.79297 -18.06427 -17.49417 -17.01144 -16.69953 -16.27023 -16.11878 -15.72149 -15.56428 -15.37170 -14.95771 -14.80329 -14.43506 -14.35333 -14.02459 -13.61602 -13.41752 -13.28647 -12.97077 -12.95520 -12.49062 -12.42581 -12.33425 -12.25241 -12.22348 -12.13754 -11.36923 -11.20521 -10.79701 -10.45908 -10.02571 -9.66506 -9.09814 -8.98223 -8.47009 -6.15531 -0.27881 0.18840 0.47879 0.75684 0.90058 1.33997 1.34186 1.44870 1.50412 1.87157 1.93124 2.17711 2.83751 3.16339 3.41894 3.42429 3.68913 3.96874 4.04859 4.10474 4.29135 4.31391 4.40219 4.56878 4.59539 4.65935 4.74249 4.79016 4.91096 5.05054 5.07899 5.12733 5.30104 5.37716 5.64345 5.72009 5.74831 6.02596 6.09902 6.25205 6.76626 6.88931 6.97658 7.79105 8.76246 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.021886 B = 0.002690 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.022229 B =10406.570988 C =10834.328236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.000 4.000 3 N -0.474 5.474 4 C -0.033 4.033 5 S 0.192 5.808 6 C -0.012 4.012 7 N -0.614 5.614 8 C 0.505 3.495 9 O -0.535 6.535 10 C -0.080 4.080 11 C -0.030 4.030 12 C -0.177 4.177 13 C -0.074 4.074 14 C -0.245 4.245 15 C 0.111 3.889 16 O -0.234 6.234 17 C -0.414 4.414 18 H 0.100 0.900 19 C -0.023 4.023 20 N -0.922 5.922 21 Si 1.018 2.982 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.256 1.256 25 C -0.189 4.189 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.224 0.776 30 H 0.437 0.563 31 H 0.155 0.845 32 H 0.132 0.868 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.116 0.884 36 H 0.272 0.728 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.753 13.708 -13.396 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 N -0.188 5.188 4 C -0.331 4.331 5 S 0.443 5.557 6 C -0.231 4.231 7 N -0.263 5.263 8 C 0.293 3.707 9 O -0.411 6.411 10 C -0.119 4.119 11 C -0.030 4.030 12 C -0.195 4.195 13 C -0.092 4.092 14 C -0.264 4.264 15 C 0.061 3.939 16 O -0.141 6.141 17 C -0.490 4.490 18 H 0.117 0.883 19 C -0.220 4.220 20 N -0.560 5.560 21 Si 0.837 3.163 22 H -0.184 1.184 23 H -0.195 1.195 24 H -0.180 1.180 25 C -0.209 4.209 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.240 0.760 30 H 0.280 0.720 31 H 0.173 0.827 32 H 0.150 0.850 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.134 0.866 36 H 0.081 0.919 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.202 13.811 -12.940 21.993 hybrid contribution -0.232 -0.558 0.566 0.828 sum -11.434 13.253 -12.374 21.436 Atomic orbital electron populations 1.20376 0.84761 1.04360 1.03674 1.20624 0.99661 0.84781 1.08552 1.66241 1.05984 1.31115 1.15491 1.28924 0.95612 1.02738 1.05815 1.85400 1.02442 1.00178 1.67687 1.23576 0.97635 0.89832 1.12008 1.42835 1.11756 1.00386 1.71353 1.21546 0.86405 0.87906 0.74828 1.90739 1.17124 1.85049 1.48140 1.20653 0.96660 0.85601 1.08993 1.19106 0.96371 0.95833 0.91734 1.20985 0.99548 1.01266 0.97689 1.21130 0.95477 0.95844 0.96786 1.21311 1.04972 1.07292 0.92848 1.19885 0.93195 0.94273 0.86543 1.83934 1.51566 1.51454 1.27187 1.21771 1.16507 1.15256 0.95510 0.88261 1.26584 1.01095 1.00914 0.93443 1.70176 1.43973 1.43488 0.98379 0.84661 0.76673 0.76622 0.78341 1.18350 1.19547 1.17984 1.20232 0.99030 1.02777 0.98826 0.89969 0.90256 0.88966 0.76015 0.72036 0.82695 0.84989 0.83306 0.83820 0.86601 0.91858 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.07 71.24 0.72 -0.17 16 2 C 0.00 -0.01 6.77 41.67 0.28 0.27 16 3 N -0.47 -11.03 10.53 -191.07 -2.01 -13.04 16 4 C -0.03 -0.69 12.21 130.67 1.60 0.91 16 5 S 0.19 4.78 20.47 -56.49 -1.16 3.62 16 6 C -0.01 -0.27 7.18 82.54 0.59 0.32 16 7 N -0.61 -10.70 5.40 -305.82 -1.65 -12.35 16 8 C 0.50 11.93 7.79 87.66 0.68 12.62 16 9 O -0.53 -18.13 13.67 -3.12 -0.04 -18.17 16 10 C -0.08 -1.52 5.83 29.10 0.17 -1.35 16 11 C -0.03 -0.94 4.37 -19.88 -0.09 -1.03 16 12 C -0.18 -5.31 9.70 22.30 0.22 -5.10 16 13 C -0.07 -2.57 10.04 22.25 0.22 -2.35 16 14 C -0.24 -10.94 9.17 22.39 0.21 -10.74 16 15 C 0.11 5.66 6.65 22.58 0.15 5.81 16 16 O -0.23 -14.47 9.76 -22.74 -0.22 -14.69 16 17 C -0.41 -24.68 9.49 67.92 0.64 -24.04 16 18 H 0.10 5.44 5.21 -2.91 -0.02 5.42 16 19 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 20 N -0.92 -57.48 13.67 21.61 0.30 -57.19 16 21 Si 1.02 43.52 29.55 68.60 2.03 45.55 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 25 C -0.19 -8.08 9.65 22.39 0.22 -7.86 16 26 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 0.62 7.21 -2.38 -0.02 0.60 16 29 H 0.22 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.44 3.68 7.62 -92.71 -0.71 2.97 16 31 H 0.16 1.50 8.09 -2.38 -0.02 1.48 16 32 H 0.13 1.95 8.08 -2.39 -0.02 1.93 16 33 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 35 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 36 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -84.31 337.43 3.74 -80.58 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.42 Total: 19.29 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 6.07 Total: -33.58 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -3.37 Total: -82.59 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.26 Total: -32.87 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.16 Total: 3.62 kcal Total: -84.31 3.74 -80.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760562071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.189 kcal (2) G-P(sol) polarization free energy of solvation -84.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds