Wall clock time and date at job start Tue Mar 31 2020 11:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.28919 * 124.84088 * 2 1 4 4 C 1.31867 * 117.19489 * 179.97438 * 3 2 1 5 5 C 1.34366 * 114.29987 * 359.97438 * 4 3 2 6 6 N 1.39790 * 126.06512 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99740 * 180.02562 * 6 5 4 8 8 O 1.21305 * 119.99762 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99878 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.46970 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96224 * 270.02075 * 10 9 7 12 12 C 1.38279 * 120.13490 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.07187 * 359.77180 * 12 11 10 14 14 C 1.38861 * 119.92847 * 0.50048 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.74703 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96952 * 89.99515 * 10 9 7 25 25 S 1.70951 * 124.84566 * 180.30686 * 2 1 3 26 26 H 1.09000 * 109.46835 * 89.98048 * 1 2 3 27 27 H 1.09001 * 109.46554 * 209.97469 * 1 2 3 28 28 H 1.08991 * 109.47088 * 329.97827 * 1 2 3 29 29 H 1.07994 * 122.85004 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00448 * 0.02562 * 6 5 4 31 31 H 1.08996 * 109.47386 * 59.99804 * 9 7 6 32 32 H 1.08997 * 109.47038 * 299.99640 * 9 7 6 33 33 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.96467 * 180.02562 * 12 11 10 35 35 H 1.08001 * 120.03711 * 180.27572 * 13 12 11 36 36 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 37 37 H 1.08001 * 120.03594 * 0.04940 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2436 1.0581 0.0000 4 6 3.5505 0.8826 0.0005 5 6 3.9356 -0.4047 0.0015 6 7 5.2541 -0.8692 0.0018 7 6 5.5017 -2.1941 0.0023 8 8 4.5804 -2.9833 0.0021 9 6 6.9230 -2.6950 0.0031 10 6 6.9245 -4.2020 0.0030 11 6 6.9240 -4.8930 1.2013 12 6 6.9248 -6.2757 1.2054 13 6 6.9214 -6.9713 0.0121 14 6 6.9276 -6.2806 -1.1925 15 8 6.9294 -6.9614 -2.3669 16 6 7.0470 -8.3028 -2.2967 17 1 7.0523 -8.7948 -1.3354 18 6 7.1610 -9.0505 -3.4588 19 7 7.2761 -10.3592 -3.3903 20 14 7.1524 -8.1993 -5.1216 21 1 8.5435 -7.8493 -5.5058 22 1 6.5718 -9.1100 -6.1408 23 1 6.3351 -6.9622 -5.0403 24 6 6.9258 -4.8916 -1.1932 25 16 2.4838 -1.4030 -0.0075 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3632 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5141 29 1 4.2519 1.7039 0.0010 30 1 5.9907 -0.2382 0.0015 31 1 7.4361 -2.3309 0.8932 32 1 7.4368 -2.3315 -0.8867 33 1 6.9230 -4.3513 2.1357 34 1 6.9240 -6.8124 2.1426 35 1 6.9176 -8.0513 0.0159 36 1 7.3555 -10.8823 -4.2033 37 1 6.9266 -4.3516 -2.1285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760601695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:32 Heat of formation + Delta-G solvation = 9.109205 kcal Electronic energy + Delta-G solvation = -22656.854057 eV Core-core repulsion = 19105.990113 eV Total energy + Delta-G solvation = -3550.863944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.57235 -39.60138 -39.01219 -36.78054 -35.27614 -32.60512 -32.33562 -31.59076 -29.54445 -28.29051 -26.69905 -25.19503 -24.03134 -22.15004 -21.63641 -20.74905 -20.17572 -18.24862 -17.78235 -17.41895 -16.95258 -16.55325 -15.97490 -15.26358 -15.03029 -14.70944 -14.60130 -14.25844 -14.00295 -13.75861 -13.56603 -13.49084 -13.02666 -12.69089 -12.59380 -12.54546 -12.22279 -11.89751 -11.56590 -11.38048 -11.23903 -10.93011 -10.85969 -10.76547 -10.36183 -10.18025 -9.53993 -9.42149 -9.16991 -8.89038 -8.28258 -8.23233 -7.40884 -6.42607 -4.09550 0.56458 0.98404 1.68835 1.91416 2.21690 2.23774 2.75550 2.79841 3.21094 3.24239 3.39583 4.11768 4.22701 4.33682 4.58440 4.73101 4.86918 4.94388 5.04486 5.07017 5.20187 5.23719 5.27465 5.40459 5.55588 5.61218 5.73395 5.77149 6.06444 6.10756 6.19383 6.45749 6.71697 6.83976 7.02465 7.14338 7.27039 7.55706 7.62604 7.73002 7.78163 8.02146 8.92666 9.54705 10.65126 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.002904 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.873247 B = 9638.525183 C =10339.156857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.025 4.025 3 N -0.457 5.457 4 C -0.022 4.022 5 C -0.001 4.001 6 N -0.636 5.636 7 C 0.504 3.496 8 O -0.484 6.484 9 C -0.084 4.084 10 C -0.042 4.042 11 C -0.187 4.187 12 C -0.075 4.075 13 C -0.214 4.214 14 C 0.160 3.840 15 O -0.218 6.218 16 C -0.389 4.389 17 H 0.107 0.893 18 C 0.064 3.936 19 N -0.880 5.880 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.173 4.173 25 S 0.245 5.755 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.172 0.828 30 H 0.419 0.581 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.279 0.721 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 21.019 8.096 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.303 4.303 3 N -0.172 5.172 4 C -0.177 4.177 5 C -0.220 4.220 6 N -0.283 5.283 7 C 0.291 3.709 8 O -0.356 6.356 9 C -0.124 4.124 10 C -0.043 4.043 11 C -0.206 4.206 12 C -0.093 4.093 13 C -0.234 4.234 14 C 0.108 3.892 15 O -0.123 6.123 16 C -0.465 4.465 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.518 5.518 20 Si 0.730 3.270 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.184 1.184 24 C -0.192 4.192 25 S 0.496 5.504 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.189 0.811 30 H 0.257 0.743 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.090 0.910 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.308 19.683 7.715 22.062 hybrid contribution 1.177 1.230 -0.661 1.826 sum -5.132 20.913 7.054 22.659 Atomic orbital electron populations 1.20322 0.85524 1.03767 1.03533 1.27271 1.02299 0.93718 1.06995 1.66226 1.03761 1.32104 1.15076 1.21476 0.91909 0.93860 1.10419 1.23859 0.91159 0.96763 1.10198 1.43081 1.04217 1.08438 1.72556 1.21354 0.93235 0.80710 0.75621 1.90730 1.45595 1.53680 1.45614 1.20524 0.91572 0.94973 1.05353 1.18575 1.00955 0.91485 0.93256 1.20416 1.09908 0.94198 0.96051 1.20744 0.97752 0.93753 0.97086 1.21325 1.08972 1.01185 0.91881 1.18996 0.93273 0.90984 0.85913 1.83568 1.80471 1.21704 1.26537 1.20764 1.51532 0.77285 0.96918 0.87616 1.24456 0.95616 0.94796 0.99086 1.69644 1.47562 1.04432 1.30131 0.86192 0.79129 0.79925 0.81730 1.19887 1.20746 1.18378 1.19932 1.10599 0.91493 0.97216 1.85164 0.92228 1.05695 1.67316 0.90013 0.90352 0.89776 0.81116 0.74330 0.87523 0.87500 0.87659 0.87065 0.84899 0.91043 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.46 36.01 0.38 -0.18 16 2 C -0.03 -0.29 7.38 -13.50 -0.10 -0.39 16 3 N -0.46 -5.61 10.54 -11.70 -0.12 -5.73 16 4 C -0.02 -0.23 11.39 -18.90 -0.22 -0.45 16 5 C 0.00 -0.02 7.26 -15.28 -0.11 -0.13 16 6 N -0.64 -5.98 5.44 -10.60 -0.06 -6.04 16 7 C 0.50 6.23 7.79 -10.98 -0.09 6.14 16 8 O -0.48 -8.09 13.67 5.54 0.08 -8.01 16 9 C -0.08 -0.91 5.83 -29.04 -0.17 -1.07 16 10 C -0.04 -0.68 4.37 -104.65 -0.46 -1.13 16 11 C -0.19 -3.04 9.70 -39.53 -0.38 -3.43 16 12 C -0.08 -1.35 10.04 -39.61 -0.40 -1.75 16 13 C -0.21 -4.63 9.17 -39.39 -0.36 -4.99 16 14 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 15 O -0.22 -5.76 8.59 0.05 0.00 -5.76 16 16 C -0.39 -10.99 9.95 30.89 0.31 -10.68 16 17 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 18 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 19 N -0.88 -25.43 13.96 55.48 0.77 -24.65 16 20 Si 0.90 21.70 28.62 -169.99 -4.86 16.83 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.26 -6.29 7.11 56.52 0.40 -5.88 16 24 C -0.17 -3.37 9.64 -39.40 -0.38 -3.75 16 25 S 0.25 3.04 20.42 -107.50 -2.20 0.85 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.42 2.20 8.82 -40.82 -0.36 1.84 16 31 H 0.11 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.11 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.13 3.01 5.64 -52.49 -0.30 2.71 16 36 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -34.08 338.70 -7.49 -41.58 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.88 Total: 2.50 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.33 Total: -16.67 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.59 Total: -36.43 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.08 Total: -13.77 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.86 Total: 16.83 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.20 Total: 0.85 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.08 -7.49 -41.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760601695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.685 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds