Wall clock time and date at job start Tue Mar 31 2020 11:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.28919 * 124.84088 * 2 1 4 4 C 1.31867 * 117.19489 * 179.97438 * 3 2 1 5 5 C 1.34366 * 114.29987 * 359.97438 * 4 3 2 6 6 N 1.39790 * 126.06512 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99740 * 180.02562 * 6 5 4 8 8 O 1.21305 * 119.99762 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99878 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.46970 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96224 * 270.02075 * 10 9 7 12 12 C 1.38279 * 120.13490 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.07187 * 359.77180 * 12 11 10 14 14 C 1.38861 * 119.92847 * 0.50048 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.74703 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96952 * 89.99515 * 10 9 7 25 25 S 1.70951 * 124.84566 * 180.30686 * 2 1 3 26 26 H 1.09000 * 109.46835 * 89.98048 * 1 2 3 27 27 H 1.09001 * 109.46554 * 209.97469 * 1 2 3 28 28 H 1.08991 * 109.47088 * 329.97827 * 1 2 3 29 29 H 1.07994 * 122.85004 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00448 * 0.02562 * 6 5 4 31 31 H 1.08996 * 109.47386 * 59.99804 * 9 7 6 32 32 H 1.08997 * 109.47038 * 299.99640 * 9 7 6 33 33 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.96467 * 180.02562 * 12 11 10 35 35 H 1.08001 * 120.03711 * 180.27572 * 13 12 11 36 36 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 37 37 H 1.08001 * 120.03594 * 0.04940 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2436 1.0581 0.0000 4 6 3.5505 0.8826 0.0005 5 6 3.9356 -0.4047 0.0015 6 7 5.2541 -0.8692 0.0018 7 6 5.5017 -2.1941 0.0023 8 8 4.5804 -2.9833 0.0021 9 6 6.9230 -2.6950 0.0031 10 6 6.9245 -4.2020 0.0030 11 6 6.9240 -4.8930 1.2013 12 6 6.9248 -6.2757 1.2054 13 6 6.9214 -6.9713 0.0121 14 6 6.9276 -6.2806 -1.1925 15 8 6.9294 -6.9614 -2.3669 16 6 7.0470 -8.3028 -2.2967 17 1 7.0523 -8.7948 -1.3354 18 6 7.1610 -9.0505 -3.4588 19 7 7.2761 -10.3592 -3.3903 20 14 7.1524 -8.1993 -5.1216 21 1 8.5435 -7.8493 -5.5058 22 1 6.5718 -9.1100 -6.1408 23 1 6.3351 -6.9622 -5.0403 24 6 6.9258 -4.8916 -1.1932 25 16 2.4838 -1.4030 -0.0075 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3632 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5141 29 1 4.2519 1.7039 0.0010 30 1 5.9907 -0.2382 0.0015 31 1 7.4361 -2.3309 0.8932 32 1 7.4368 -2.3315 -0.8867 33 1 6.9230 -4.3513 2.1357 34 1 6.9240 -6.8124 2.1426 35 1 6.9176 -8.0513 0.0159 36 1 7.3555 -10.8823 -4.2033 37 1 6.9266 -4.3516 -2.1285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760601695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:32 Heat of formation + Delta-G solvation = -14.473428 kcal Electronic energy + Delta-G solvation = -22657.876677 eV Core-core repulsion = 19105.990113 eV Total energy + Delta-G solvation = -3551.886564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55063 -40.80907 -40.30008 -38.37612 -36.19091 -34.49385 -33.69905 -32.40730 -31.10803 -29.36531 -27.76666 -27.12916 -24.85508 -23.49970 -22.98288 -21.90912 -21.20425 -19.67024 -19.15441 -18.91328 -17.94644 -17.48946 -17.00954 -16.85795 -16.40217 -15.87787 -15.74294 -15.53712 -15.47488 -15.17162 -14.95653 -14.42373 -14.24337 -14.17598 -13.96686 -13.66135 -13.20222 -13.06624 -12.92802 -12.55818 -12.48292 -12.41128 -12.37072 -12.10195 -11.94399 -11.37704 -11.30879 -10.91760 -10.42765 -10.09196 -9.70579 -9.09507 -9.07859 -8.51081 -6.23846 -0.29100 0.15436 0.43660 0.68982 0.86703 1.29436 1.33603 1.34409 1.50290 1.87956 1.96577 2.26848 2.76577 3.03004 3.12541 3.39329 3.64350 3.97439 4.06545 4.12090 4.27812 4.28459 4.39866 4.53078 4.60456 4.65811 4.69558 4.70032 4.83510 4.94976 5.09062 5.22967 5.33951 5.38512 5.62474 5.70954 5.75739 5.90506 6.13101 6.25532 6.78625 6.83356 6.90552 7.58159 8.60828 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.002904 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.873247 B = 9638.525183 C =10339.156857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.016 4.016 3 N -0.481 5.481 4 C -0.016 4.016 5 C -0.011 4.011 6 N -0.615 5.615 7 C 0.504 3.496 8 O -0.536 6.536 9 C -0.079 4.079 10 C -0.032 4.032 11 C -0.167 4.167 12 C -0.079 4.079 13 C -0.239 4.239 14 C 0.118 3.882 15 O -0.247 6.247 16 C -0.399 4.399 17 H 0.080 0.920 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.971 3.029 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.266 1.266 24 C -0.178 4.178 25 S 0.192 5.808 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.202 0.798 30 H 0.441 0.559 31 H 0.154 0.846 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.105 0.895 36 H 0.285 0.715 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 25.242 9.102 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.294 4.294 3 N -0.196 5.196 4 C -0.170 4.170 5 C -0.229 4.229 6 N -0.264 5.264 7 C 0.292 3.708 8 O -0.412 6.412 9 C -0.118 4.118 10 C -0.033 4.033 11 C -0.185 4.185 12 C -0.097 4.097 13 C -0.258 4.258 14 C 0.069 3.931 15 O -0.155 6.155 16 C -0.476 4.476 17 H 0.097 0.903 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.793 3.207 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.191 1.191 24 C -0.197 4.197 25 S 0.443 5.557 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.219 0.781 30 H 0.283 0.717 31 H 0.172 0.828 32 H 0.156 0.844 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.766 23.980 8.759 26.173 hybrid contribution 0.960 0.197 -0.663 1.183 sum -4.806 24.178 8.097 25.946 Atomic orbital electron populations 1.20495 0.83503 1.04845 1.04582 1.27753 1.03479 0.92696 1.05433 1.66304 1.04668 1.32419 1.16166 1.21943 0.91891 0.94429 1.08722 1.23836 0.91351 0.96430 1.11320 1.42826 1.04210 1.08008 1.71336 1.21576 0.93223 0.81152 0.74816 1.90745 1.47074 1.55169 1.48232 1.20649 0.91197 0.90646 1.09263 1.19142 0.97643 0.94813 0.91705 1.21025 1.05968 0.93489 0.98065 1.21110 0.96802 0.95097 0.96664 1.21339 1.10839 1.00247 0.93363 1.19606 0.95360 0.92593 0.85529 1.83505 1.83296 1.20394 1.28279 1.20704 1.51906 0.78643 0.96301 0.90275 1.25278 0.95488 0.95439 1.02652 1.69729 1.49782 1.05703 1.31312 0.85218 0.79508 0.78563 0.77419 1.18657 1.19183 1.19077 1.20289 1.10065 0.90004 0.99359 1.85381 0.94352 1.07641 1.68326 0.88882 0.89061 0.88863 0.78106 0.71706 0.82810 0.84434 0.83229 0.84315 0.87662 0.90562 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.46 71.24 0.75 -0.29 16 2 C -0.02 -0.34 7.38 88.54 0.65 0.31 16 3 N -0.48 -10.76 10.54 -190.94 -2.01 -12.77 16 4 C -0.02 -0.29 11.39 83.80 0.95 0.67 16 5 C -0.01 -0.23 7.26 82.54 0.60 0.37 16 6 N -0.62 -9.14 5.44 -305.83 -1.66 -10.81 16 7 C 0.50 10.61 7.79 87.66 0.68 11.29 16 8 O -0.54 -16.93 13.67 -3.11 -0.04 -16.98 16 9 C -0.08 -1.26 5.83 29.10 0.17 -1.09 16 10 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 11 C -0.17 -4.80 9.70 22.30 0.22 -4.59 16 12 C -0.08 -2.74 10.04 22.25 0.22 -2.51 16 13 C -0.24 -10.76 9.17 22.39 0.21 -10.56 16 14 C 0.12 5.64 6.65 22.58 0.15 5.79 16 15 O -0.25 -13.75 8.59 -22.74 -0.20 -13.95 16 16 C -0.40 -24.06 9.95 67.92 0.68 -23.38 16 17 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16 18 C 0.01 0.56 5.49 84.83 0.47 1.03 16 19 N -0.92 -56.06 13.96 21.61 0.30 -55.76 16 20 Si 0.97 46.16 28.62 68.60 1.96 48.13 16 21 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 24 C -0.18 -6.78 9.64 22.39 0.22 -6.57 16 25 S 0.19 4.61 20.42 -56.49 -1.15 3.46 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 30 H 0.44 2.37 8.82 -92.71 -0.82 1.55 16 31 H 0.15 1.13 8.09 -2.39 -0.02 1.11 16 32 H 0.14 1.49 8.08 -2.39 -0.02 1.47 16 33 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 34 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 35 H 0.11 5.24 5.64 -2.91 -0.02 5.22 16 36 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 37 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -80.75 338.70 3.38 -77.37 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.31 Total: 11.86 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 5.87 Total: -30.55 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -3.37 Total: -79.34 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.24 Total: -30.92 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.96 Total: 48.13 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.15 Total: 3.46 kcal Total: -80.75 3.38 -77.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760601695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.897 kcal (2) G-P(sol) polarization free energy of solvation -80.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds