Wall clock time and date at job start Tue Mar 31 2020 11:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29414 * 125.69902 * 2 1 4 4 N 1.26393 * 116.47502 * 180.02562 * 3 2 1 5 5 C 1.29417 * 116.47764 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.69506 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.47130 * 165.02408 * 6 5 4 8 8 C 1.53003 * 109.47366 * 285.02429 * 6 5 4 9 9 O 1.45203 * 109.47402 * 45.02858 * 6 5 4 10 10 C 1.34771 * 117.00457 * 149.99768 * 9 6 5 11 11 O 1.21515 * 120.00026 * 359.97438 * 10 9 6 12 12 C 1.47501 * 120.00094 * 179.97438 * 10 9 6 13 13 C 1.40073 * 119.90212 * 180.02562 * 12 10 9 14 14 C 1.36300 * 120.10206 * 180.25905 * 13 12 10 15 15 C 1.40893 * 119.89711 * 359.51403 * 14 13 12 16 16 C 1.41091 * 120.10255 * 180.23496 * 15 14 13 17 17 H 1.08001 * 120.00415 * 204.81651 * 16 15 14 18 18 C 1.40248 * 119.99756 * 24.80634 * 16 15 14 19 19 N 1.30632 * 119.99956 * 17.73115 * 18 16 15 20 20 Si 1.86797 * 120.00167 * 197.73172 * 18 16 15 21 21 H 1.48501 * 109.47351 * 90.00385 * 20 18 16 22 22 H 1.48499 * 109.47050 * 210.00026 * 20 18 16 23 23 H 1.48500 * 109.47161 * 329.99778 * 20 18 16 24 24 C 1.40906 * 119.80286 * 0.50317 * 15 14 13 25 25 C 1.36297 * 119.89800 * 359.73440 * 24 15 14 26 26 S 1.71218 * 125.69209 * 180.30937 * 2 1 3 27 27 H 1.08993 * 109.47486 * 89.97387 * 1 2 3 28 28 H 1.09001 * 109.47009 * 209.97664 * 1 2 3 29 29 H 1.08998 * 109.46884 * 329.97358 * 1 2 3 30 30 H 1.09005 * 109.46995 * 179.97438 * 8 6 5 31 31 H 1.09000 * 109.46895 * 300.00238 * 8 6 5 32 32 H 1.09003 * 109.46864 * 60.00419 * 8 6 5 33 33 H 1.08002 * 119.94534 * 359.97438 * 13 12 10 34 34 H 1.08004 * 120.05042 * 179.74750 * 14 13 12 35 35 H 0.97000 * 120.00424 * 179.97438 * 19 18 16 36 36 H 1.07999 * 120.05172 * 179.70589 * 24 15 14 37 37 H 1.07997 * 119.94971 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5098 0.8484 -0.0005 5 6 3.8936 -0.3876 -0.0015 6 6 5.3232 -0.8643 -0.0028 7 1 5.3540 -1.9212 0.2622 8 6 5.9243 -0.6701 -1.3963 9 8 6.0891 -0.1001 0.9656 10 6 7.1302 -0.7237 1.5517 11 8 7.3905 -1.8747 1.2619 12 6 7.9537 -0.0090 2.5451 13 6 9.0356 -0.6590 3.1527 14 6 9.7961 -0.0042 4.0750 15 6 9.4988 1.3318 4.4095 16 6 10.2861 2.0153 5.3601 17 1 9.8681 2.8443 5.9118 18 6 11.6116 1.6180 5.5886 19 7 12.2298 0.8711 4.7131 20 14 12.4931 2.1568 7.1449 21 1 12.2692 1.1509 8.2141 22 1 13.9483 2.2754 6.8737 23 1 11.9626 3.4725 7.5839 24 6 8.4092 1.9815 3.7961 25 6 7.6513 1.3174 2.8784 26 16 2.5059 -1.3906 -0.0075 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 6.9585 -1.0145 -1.3971 31 1 5.3493 -1.2438 -2.1232 32 1 5.8936 0.3868 -1.6612 33 1 9.2648 -1.6820 2.8932 34 1 10.6276 -0.5075 4.5459 35 1 13.1467 0.5966 4.8709 36 1 8.1748 3.0039 4.0530 37 1 6.8162 1.8146 2.4075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784405551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:45 Heat of formation + Delta-G solvation = -29.235077 kcal Electronic energy + Delta-G solvation = -22762.823996 eV Core-core repulsion = 19210.297319 eV Total energy + Delta-G solvation = -3552.526677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.50809 -41.39599 -39.36655 -37.63944 -35.79804 -34.81598 -32.93517 -32.03345 -31.43265 -29.48481 -28.06294 -26.66093 -24.97128 -23.75564 -22.95471 -21.83151 -20.67976 -20.36091 -19.43039 -18.72614 -17.99937 -17.21045 -17.18573 -16.77541 -16.35180 -15.77695 -15.33301 -15.25303 -14.79089 -14.57007 -14.34616 -14.23254 -14.07811 -13.85042 -13.74497 -13.54846 -13.30300 -13.15097 -12.87513 -12.73541 -12.54810 -12.41639 -12.01821 -11.83935 -11.59258 -11.42249 -11.37045 -11.20400 -11.16720 -10.83799 -10.70303 -9.66692 -9.55962 -8.87142 -6.57908 -0.75857 -0.28716 0.17906 0.19898 1.11189 1.33574 1.35740 1.40329 1.53900 1.84353 1.87544 2.13762 2.64403 2.73786 3.41984 3.58089 3.59832 3.77472 3.96208 4.10027 4.20007 4.32666 4.39099 4.59245 4.61841 4.62239 4.71351 4.90362 4.95489 4.99122 5.06755 5.12649 5.17980 5.33582 5.52474 5.74229 5.89351 5.95096 6.12535 6.46453 6.67553 6.78997 6.93797 7.43287 8.07734 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.027781 B = 0.002562 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.639827 B =10927.365463 C =11497.741919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.015 4.015 3 N -0.303 5.303 4 N -0.265 5.265 5 C -0.051 4.051 6 C 0.164 3.836 7 H 0.111 0.889 8 C -0.155 4.155 9 O -0.348 6.348 10 C 0.522 3.478 11 O -0.560 6.560 12 C -0.291 4.291 13 C -0.036 4.036 14 C -0.202 4.202 15 C 0.106 3.894 16 C -0.456 4.456 17 H 0.095 0.905 18 C 0.034 3.966 19 N -0.791 5.791 20 Si 0.993 3.007 21 H -0.259 1.259 22 H -0.264 1.264 23 H -0.253 1.253 24 C -0.251 4.251 25 C -0.023 4.023 26 S 0.258 5.742 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.300 0.700 36 H 0.113 0.887 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.881 -5.330 -7.351 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.293 4.293 3 N -0.142 5.142 4 N -0.103 5.103 5 C -0.330 4.330 6 C 0.105 3.895 7 H 0.128 0.872 8 C -0.214 4.214 9 O -0.265 6.265 10 C 0.374 3.626 11 O -0.455 6.455 12 C -0.294 4.294 13 C -0.055 4.055 14 C -0.221 4.221 15 C 0.102 3.898 16 C -0.483 4.483 17 H 0.113 0.887 18 C -0.187 4.187 19 N -0.414 5.414 20 Si 0.812 3.188 21 H -0.183 1.183 22 H -0.189 1.189 23 H -0.176 1.176 24 C -0.270 4.270 25 C -0.041 4.041 26 S 0.503 5.497 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.570 -5.406 -7.541 18.991 hybrid contribution 0.813 0.307 0.408 0.960 sum -15.757 -5.099 -7.133 18.032 Atomic orbital electron populations 1.20714 0.80408 1.06312 1.06219 1.30163 1.06336 0.91581 1.01171 1.71499 0.96800 1.28544 1.17336 1.71415 1.07265 1.18350 1.13302 1.28843 1.02906 0.93966 1.07314 1.20972 0.82243 0.95913 0.90347 0.87154 1.22164 1.02169 1.03998 0.93059 1.86744 1.41195 1.45211 1.53330 1.21330 0.78044 0.84386 0.78795 1.90669 1.70900 1.19250 1.64701 1.18398 1.04302 0.97237 1.09468 1.20529 0.92534 0.98151 0.94276 1.20960 1.02603 0.95282 1.03239 1.18191 0.90750 0.91548 0.89265 1.20278 0.96529 1.14037 1.17406 0.88709 1.27092 0.98220 0.92901 1.00444 1.69768 1.13192 1.24965 1.33469 0.85021 0.77226 0.80142 0.76392 1.18329 1.18873 1.17586 1.20921 1.02080 1.00066 1.03943 1.20715 0.96467 0.92542 0.94389 1.83273 0.93807 1.09052 1.63591 0.86750 0.86884 0.88394 0.91140 0.87579 0.91485 0.87607 0.86772 0.88855 0.86872 0.86482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.48 71.24 0.75 0.09 16 2 C -0.01 -0.28 7.53 88.46 0.67 0.38 16 3 N -0.30 -8.81 11.66 -50.85 -0.59 -9.40 16 4 N -0.27 -8.81 11.65 -50.85 -0.59 -9.40 16 5 C -0.05 -1.44 6.43 88.46 0.57 -0.88 16 6 C 0.16 5.04 3.10 29.85 0.09 5.13 16 7 H 0.11 3.19 7.16 -2.38 -0.02 3.18 16 8 C -0.16 -4.04 9.53 71.98 0.69 -3.35 16 9 O -0.35 -13.82 9.09 -56.82 -0.52 -14.34 16 10 C 0.52 23.20 7.86 70.26 0.55 23.75 16 11 O -0.56 -25.51 15.58 19.79 0.31 -25.20 16 12 C -0.29 -14.09 5.89 -19.95 -0.12 -14.21 16 13 C -0.04 -1.80 9.52 22.26 0.21 -1.59 16 14 C -0.20 -10.53 8.63 22.47 0.19 -10.34 16 15 C 0.11 5.53 5.57 -21.28 -0.12 5.41 16 16 C -0.46 -22.68 9.04 23.46 0.21 -22.47 16 17 H 0.09 4.42 7.91 -2.91 -0.02 4.40 16 18 C 0.03 1.55 5.14 85.36 0.44 1.99 16 19 N -0.79 -38.18 10.95 21.88 0.24 -37.94 16 20 Si 0.99 34.23 29.60 68.60 2.03 36.26 16 21 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 22 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 23 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 24 C -0.25 -12.23 9.73 22.47 0.22 -12.01 16 25 C -0.02 -1.06 9.55 22.26 0.21 -0.85 16 26 S 0.26 4.63 23.04 -56.49 -1.30 3.33 16 27 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.11 5.07 7.63 -2.91 -0.02 5.05 16 34 H 0.11 6.04 6.16 -2.91 -0.02 6.03 16 35 H 0.30 12.83 8.29 -92.71 -0.77 12.06 16 36 H 0.11 5.07 8.06 -2.91 -0.02 5.04 16 37 H 0.12 5.10 7.59 -2.91 -0.02 5.08 16 Total: -1.00 -66.21 342.56 5.25 -60.97 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 1.11 Total: 24.67 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 4.56 Total: -28.95 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.95 Total: -56.75 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -0.21 Total: -39.54 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.26 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -1.30 Total: 3.33 kcal Total: -66.21 5.25 -60.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784405551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.730 kcal (2) G-P(sol) polarization free energy of solvation -66.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds