Wall clock time and date at job start Tue Mar 31 2020 11:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47420 * 2 1 4 4 H 1.09000 * 109.47018 * 305.00449 * 3 2 1 5 5 C 1.50697 * 109.47502 * 185.00287 * 3 2 1 6 6 H 1.08003 * 120.00233 * 240.00112 * 5 3 2 7 7 C 1.37875 * 120.00301 * 59.99688 * 5 3 2 8 8 N 1.31520 * 119.99922 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00482 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46608 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47008 * 119.99706 * 9 7 5 12 12 H 1.48495 * 109.47256 * 240.00098 * 9 7 5 13 13 O 1.45200 * 109.47185 * 64.99739 * 3 2 1 14 14 C 1.34896 * 117.00549 * 270.00280 * 13 3 2 15 15 O 1.21637 * 119.99564 * 0.02562 * 14 13 3 16 16 C 1.46397 * 120.00381 * 179.97438 * 14 13 3 17 17 C 1.36989 * 126.12388 * 179.97438 * 16 14 13 18 18 N 1.30590 * 114.01949 * 179.74385 * 17 16 14 19 19 C 1.30368 * 117.31105 * 0.45290 * 18 17 16 20 20 C 1.47796 * 124.74665 * 179.83210 * 19 18 17 21 21 C 1.40023 * 120.55911 * 359.69519 * 20 19 18 22 22 C 1.38348 * 118.28868 * 180.02562 * 21 20 19 23 23 C 1.38351 * 119.30708 * 359.97438 * 22 21 20 24 24 N 1.31906 * 121.08692 * 0.02562 * 23 22 21 25 25 C 1.31709 * 121.87813 * 359.65524 * 24 23 22 26 26 S 1.70923 * 110.51197 * 359.56670 * 19 18 17 27 27 H 1.09004 * 109.46926 * 299.99611 * 1 2 3 28 28 H 1.08998 * 109.47281 * 59.99920 * 1 2 3 29 29 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47102 * 239.99648 * 2 1 3 31 31 H 1.08998 * 109.47281 * 120.00080 * 2 1 3 32 32 H 0.96999 * 120.00408 * 179.97438 * 8 7 5 33 33 H 1.07994 * 122.98907 * 0.02562 * 17 16 14 34 34 H 1.08007 * 120.85408 * 0.02562 * 21 20 19 35 35 H 1.08006 * 120.34451 * 180.02562 * 22 21 20 36 36 H 1.08000 * 119.45293 * 180.02562 * 23 22 21 37 37 H 1.08001 * 119.72003 * 180.31912 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1734 9 14 6.0050 0.8799 -1.3813 10 1 6.5988 1.5441 -0.1932 11 1 6.4962 -0.5191 -1.4627 12 1 6.4000 1.6155 -2.6093 13 8 1.6559 2.0916 1.2407 14 6 0.4669 2.7286 1.2561 15 8 -0.2297 2.7402 0.2590 16 6 0.0144 3.4049 2.4731 17 6 -1.1637 4.0866 2.6277 18 7 -1.3309 4.5956 3.8186 19 6 -0.3789 4.4067 4.6890 20 6 -0.3951 4.9112 6.0781 21 6 -1.4809 5.6579 6.5516 22 6 -1.4469 6.1074 7.8596 23 6 -0.3521 5.8074 8.6505 24 7 0.6570 5.1017 8.1775 25 6 0.6685 4.6464 6.9417 26 16 0.8875 3.4875 4.0013 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8292 -0.0605 -2.9503 33 1 -1.8916 4.1897 1.8366 34 1 -2.3233 5.8772 5.9122 35 1 -2.2668 6.6858 8.2593 36 1 -0.3233 6.1568 9.6720 37 1 1.5107 4.0676 6.5921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:57 Heat of formation + Delta-G solvation = -10.622678 kcal Electronic energy + Delta-G solvation = -22878.322144 eV Core-core repulsion = 19326.602561 eV Total energy + Delta-G solvation = -3551.719583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63277 -39.93587 -39.10614 -35.88210 -33.62189 -33.43555 -32.32112 -31.45224 -29.90738 -27.43585 -26.41019 -24.25804 -23.56708 -23.16498 -22.09665 -19.99490 -19.46196 -18.73934 -17.40977 -17.05092 -16.69530 -16.18088 -16.03818 -15.58094 -15.40104 -14.83245 -14.68017 -14.13053 -14.03179 -13.94200 -13.44675 -13.11357 -12.91066 -12.46286 -12.24908 -11.68312 -11.54117 -11.42993 -11.25163 -11.02317 -10.72748 -10.57424 -10.33740 -10.17699 -9.96314 -9.95000 -9.87866 -9.76023 -9.55812 -9.47721 -8.89181 -8.61478 -8.51526 -6.24426 -4.31892 -0.33242 0.80131 0.97882 0.99993 1.51117 2.43889 3.20237 3.25554 3.28744 3.30385 3.41603 3.46282 3.63984 4.07254 4.28627 4.42373 4.50006 4.58462 4.76405 5.05119 5.07871 5.12717 5.25137 5.61015 5.68746 5.74905 5.95631 6.17140 6.18786 6.23719 6.38188 6.77526 6.87396 7.08823 7.11272 7.40242 7.49671 7.53662 7.65272 7.82384 8.06888 8.44729 8.78225 9.33451 10.82422 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.021175 B = 0.002997 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.013684 B = 9341.601734 C =10261.133436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.050 0.950 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.350 6.350 14 C 0.531 3.469 15 O -0.497 6.497 16 C -0.268 4.268 17 C 0.120 3.880 18 N -0.471 5.471 19 C 0.057 3.943 20 C -0.077 4.077 21 C -0.029 4.029 22 C -0.173 4.173 23 C 0.109 3.891 24 N -0.478 5.478 25 C 0.124 3.876 26 S 0.261 5.739 27 H 0.030 0.970 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.111 0.889 31 H 0.043 0.957 32 H 0.267 0.733 33 H 0.194 0.806 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.649 8.902 17.977 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.266 6.266 14 C 0.373 3.627 15 O -0.388 6.388 16 C -0.391 4.391 17 C -0.040 4.040 18 N -0.186 5.186 19 C -0.213 4.213 20 C -0.082 4.082 21 C -0.058 4.058 22 C -0.193 4.193 23 C -0.049 4.049 24 N -0.186 5.186 25 C -0.037 4.037 26 S 0.522 5.478 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.129 0.871 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.210 0.790 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.514 8.481 18.560 21.745 hybrid contribution -0.606 0.175 -1.659 1.775 sum -8.120 8.656 16.900 20.651 Atomic orbital electron populations 1.21872 0.98332 0.99198 1.00728 1.22038 0.92676 0.99166 1.03556 1.20794 0.95241 0.88799 0.78080 0.93228 1.21051 0.89404 1.39166 1.06396 0.91185 1.24885 0.99345 0.94660 0.94999 1.69893 1.35385 1.37721 1.09442 0.86218 0.83720 0.77945 0.78284 1.19417 1.20654 1.20711 1.86591 1.32853 1.62387 1.44756 1.19203 0.81526 0.76756 0.85231 1.90861 1.55562 1.58545 1.33816 1.25592 1.01750 1.12760 0.99026 1.22424 0.95122 0.92768 0.93700 1.66350 1.28252 1.22475 1.01483 1.25194 0.95803 1.02434 0.97836 1.18924 0.97638 1.01617 0.90027 1.21783 0.96915 0.91834 0.95251 1.22184 1.00531 1.02060 0.94537 1.22981 0.88781 0.92905 1.00208 1.67726 1.26989 1.09925 1.13954 1.22917 0.96207 0.95736 0.88808 1.84076 1.18389 1.43500 1.01835 0.95073 0.92693 0.94630 0.87118 0.93842 0.92339 0.78954 0.83404 0.83985 0.82167 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.56 37.16 0.32 -2.79 16 2 C -0.14 -3.31 5.49 -26.74 -0.15 -3.46 16 3 C 0.22 5.78 2.25 -27.89 -0.06 5.72 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -14.26 8.90 -34.44 -0.31 -14.57 16 6 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.53 11.29 55.43 0.63 -23.91 16 9 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 O -0.35 -8.11 9.70 -41.03 -0.40 -8.50 16 14 C 0.53 11.04 6.38 34.01 0.22 11.26 16 15 O -0.50 -11.23 14.06 -19.37 -0.27 -11.51 16 16 C -0.27 -4.44 6.52 -36.75 -0.24 -4.68 16 17 C 0.12 1.74 11.15 -18.53 -0.21 1.53 16 18 N -0.47 -6.40 10.11 -11.99 -0.12 -6.52 16 19 C 0.06 0.71 7.14 -14.27 -0.10 0.61 16 20 C -0.08 -0.81 5.89 -104.83 -0.62 -1.43 16 21 C -0.03 -0.25 9.80 -38.87 -0.38 -0.64 16 22 C -0.17 -1.16 10.10 -39.50 -0.40 -1.56 16 23 C 0.11 0.81 11.17 -17.48 -0.20 0.61 16 24 N -0.48 -4.80 10.35 -12.90 -0.13 -4.93 16 25 C 0.12 1.25 10.74 -17.12 -0.18 1.06 16 26 S 0.26 3.48 21.89 -107.50 -2.35 1.13 16 27 H 0.03 0.65 6.06 -51.93 -0.31 0.33 16 28 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.11 2.92 5.95 -51.92 -0.31 2.61 16 31 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 34 H 0.15 1.22 7.87 -52.48 -0.41 0.81 16 35 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 36 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.16 1.39 7.24 -52.49 -0.38 1.01 16 LS Contribution 336.29 15.07 5.07 5.07 Total: -1.00 -30.77 336.29 -8.86 -39.62 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -3.85 Total: 0.62 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.40 Total: -6.71 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.37 Total: -35.36 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.67 Total: -20.01 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -2.35 Total: 1.13 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.77 -8.86 -39.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.001 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds