Wall clock time and date at job start Tue Mar 31 2020 11:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47420 * 2 1 4 4 H 1.09000 * 109.47018 * 305.00449 * 3 2 1 5 5 C 1.50697 * 109.47502 * 185.00287 * 3 2 1 6 6 H 1.08003 * 120.00233 * 240.00112 * 5 3 2 7 7 C 1.37875 * 120.00301 * 59.99688 * 5 3 2 8 8 N 1.31520 * 119.99922 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00482 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46608 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47008 * 119.99706 * 9 7 5 12 12 H 1.48495 * 109.47256 * 240.00098 * 9 7 5 13 13 O 1.45200 * 109.47185 * 64.99739 * 3 2 1 14 14 C 1.34896 * 117.00549 * 270.00280 * 13 3 2 15 15 O 1.21637 * 119.99564 * 0.02562 * 14 13 3 16 16 C 1.46397 * 120.00381 * 179.97438 * 14 13 3 17 17 C 1.36989 * 126.12388 * 179.97438 * 16 14 13 18 18 N 1.30590 * 114.01949 * 179.74385 * 17 16 14 19 19 C 1.30368 * 117.31105 * 0.45290 * 18 17 16 20 20 C 1.47796 * 124.74665 * 179.83210 * 19 18 17 21 21 C 1.40023 * 120.55911 * 359.69519 * 20 19 18 22 22 C 1.38348 * 118.28868 * 180.02562 * 21 20 19 23 23 C 1.38351 * 119.30708 * 359.97438 * 22 21 20 24 24 N 1.31906 * 121.08692 * 0.02562 * 23 22 21 25 25 C 1.31709 * 121.87813 * 359.65524 * 24 23 22 26 26 S 1.70923 * 110.51197 * 359.56670 * 19 18 17 27 27 H 1.09004 * 109.46926 * 299.99611 * 1 2 3 28 28 H 1.08998 * 109.47281 * 59.99920 * 1 2 3 29 29 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47102 * 239.99648 * 2 1 3 31 31 H 1.08998 * 109.47281 * 120.00080 * 2 1 3 32 32 H 0.96999 * 120.00408 * 179.97438 * 8 7 5 33 33 H 1.07994 * 122.98907 * 0.02562 * 17 16 14 34 34 H 1.08007 * 120.85408 * 0.02562 * 21 20 19 35 35 H 1.08006 * 120.34451 * 180.02562 * 22 21 20 36 36 H 1.08000 * 119.45293 * 180.02562 * 23 22 21 37 37 H 1.08001 * 119.72003 * 180.31912 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1734 9 14 6.0050 0.8799 -1.3813 10 1 6.5988 1.5441 -0.1932 11 1 6.4962 -0.5191 -1.4627 12 1 6.4000 1.6155 -2.6093 13 8 1.6559 2.0916 1.2407 14 6 0.4669 2.7286 1.2561 15 8 -0.2297 2.7402 0.2590 16 6 0.0144 3.4049 2.4731 17 6 -1.1637 4.0866 2.6277 18 7 -1.3309 4.5956 3.8186 19 6 -0.3789 4.4067 4.6890 20 6 -0.3951 4.9112 6.0781 21 6 -1.4809 5.6579 6.5516 22 6 -1.4469 6.1074 7.8596 23 6 -0.3521 5.8074 8.6505 24 7 0.6570 5.1017 8.1775 25 6 0.6685 4.6464 6.9417 26 16 0.8875 3.4875 4.0013 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8292 -0.0605 -2.9503 33 1 -1.8916 4.1897 1.8366 34 1 -2.3233 5.8772 5.9122 35 1 -2.2668 6.6858 8.2593 36 1 -0.3233 6.1568 9.6720 37 1 1.5107 4.0676 6.5921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:56 Heat of formation + Delta-G solvation = -28.284793 kcal Electronic energy + Delta-G solvation = -22879.088030 eV Core-core repulsion = 19326.602561 eV Total energy + Delta-G solvation = -3552.485470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61803 -41.23864 -40.34387 -37.66892 -35.55108 -34.31039 -33.40703 -32.98449 -31.07562 -29.33499 -27.50778 -25.51031 -24.85629 -24.16920 -23.50801 -21.82478 -20.63407 -20.07626 -18.80744 -18.29878 -17.98491 -17.56109 -17.26673 -16.97296 -16.69200 -16.22932 -15.92761 -15.40615 -14.90848 -14.80299 -14.77031 -14.68623 -14.11317 -14.03556 -13.47954 -13.36013 -13.17583 -13.09787 -12.86837 -12.68390 -12.59582 -12.15167 -11.82848 -11.70287 -11.47459 -11.43067 -11.04618 -10.87208 -10.71450 -10.61645 -10.58664 -10.55409 -9.57938 -8.29389 -6.46161 -1.37310 -0.10680 0.04731 0.22116 0.39808 1.25029 1.41509 1.42019 1.55264 1.83147 1.84903 2.38988 2.65014 2.77086 3.00644 3.41767 3.60226 3.78163 3.83678 3.94270 4.05856 4.09489 4.34646 4.36632 4.45890 4.52698 4.66947 4.78788 4.82170 5.04995 5.07367 5.12253 5.17407 5.29709 5.48362 5.58564 5.63003 5.88432 6.04527 6.29276 6.55415 6.81790 6.83865 7.24384 8.77716 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.021175 B = 0.002997 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.013684 B = 9341.601734 C =10261.133436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C 0.227 3.773 4 H 0.011 0.989 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.980 3.020 10 H -0.264 1.264 11 H -0.271 1.271 12 H -0.276 1.276 13 O -0.358 6.358 14 C 0.532 3.468 15 O -0.526 6.526 16 C -0.318 4.318 17 C 0.145 3.855 18 N -0.483 5.483 19 C 0.086 3.914 20 C -0.104 4.104 21 C -0.030 4.030 22 C -0.161 4.161 23 C 0.114 3.886 24 N -0.502 5.502 25 C 0.121 3.879 26 S 0.279 5.721 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.271 0.729 33 H 0.204 0.796 34 H 0.153 0.847 35 H 0.180 0.820 36 H 0.195 0.805 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.955 9.983 20.818 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C 0.174 3.826 4 H 0.029 0.971 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.188 1.188 11 H -0.196 1.196 12 H -0.202 1.202 13 O -0.274 6.274 14 C 0.376 3.624 15 O -0.419 6.419 16 C -0.440 4.440 17 C -0.017 4.017 18 N -0.197 5.197 19 C -0.183 4.183 20 C -0.110 4.110 21 C -0.060 4.060 22 C -0.180 4.180 23 C -0.043 4.043 24 N -0.211 5.211 25 C -0.039 4.039 26 S 0.542 5.458 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.220 0.780 34 H 0.171 0.829 35 H 0.197 0.803 36 H 0.212 0.788 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.820 9.560 21.416 24.722 hybrid contribution -0.626 0.001 -2.277 2.362 sum -8.446 9.561 19.139 23.001 Atomic orbital electron populations 1.21726 0.96302 1.00738 1.00077 1.21884 0.94453 0.97911 1.02552 1.20490 0.94754 0.89332 0.78040 0.97076 1.21321 0.90235 1.40093 1.07004 0.91556 1.25780 1.04187 0.93823 0.94318 1.70009 1.37380 1.37848 1.09837 0.85172 0.77726 0.78360 0.78397 1.18770 1.19626 1.20182 1.86561 1.34540 1.63072 1.43236 1.19706 0.80286 0.76019 0.86402 1.90828 1.55946 1.59712 1.35365 1.25212 1.03853 1.15902 0.99069 1.22648 0.94211 0.90662 0.94166 1.66472 1.28607 1.23424 1.01244 1.25645 0.94553 0.99789 0.98357 1.18983 0.99202 1.03790 0.89029 1.22011 0.96336 0.91196 0.96409 1.22561 1.01156 1.01078 0.93251 1.23653 0.87921 0.91053 1.01646 1.67788 1.28417 1.11066 1.13800 1.23007 0.96186 0.95693 0.89024 1.83945 1.18169 1.43687 0.99997 0.94776 0.94254 0.91849 0.89235 0.93466 0.91949 0.77954 0.82892 0.80308 0.78824 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.56 71.98 0.62 -5.15 16 2 C -0.13 -6.53 5.49 30.59 0.17 -6.36 16 3 C 0.23 12.32 2.25 29.84 0.07 12.39 16 4 H 0.01 0.70 7.16 -2.39 -0.02 0.68 16 5 C -0.55 -30.94 8.90 25.60 0.23 -30.71 16 6 H 0.07 3.68 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -51.75 11.29 21.45 0.24 -51.50 16 9 Si 0.98 42.57 29.54 68.60 2.03 44.60 16 10 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 12 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 13 O -0.36 -17.32 9.70 -58.10 -0.56 -17.88 16 14 C 0.53 23.07 6.38 69.95 0.45 23.52 16 15 O -0.53 -25.00 14.06 19.39 0.27 -24.72 16 16 C -0.32 -10.74 6.52 24.10 0.16 -10.58 16 17 C 0.14 4.19 11.15 84.58 0.94 5.13 16 18 N -0.48 -12.62 10.11 -191.84 -1.94 -14.56 16 19 C 0.09 2.05 7.14 87.44 0.62 2.68 16 20 C -0.10 -2.02 5.89 -20.00 -0.12 -2.14 16 21 C -0.03 -0.45 9.80 22.73 0.22 -0.23 16 22 C -0.16 -1.50 10.10 22.32 0.23 -1.28 16 23 C 0.11 1.27 11.17 84.71 0.95 2.21 16 24 N -0.50 -8.85 10.35 -194.74 -2.01 -10.87 16 25 C 0.12 2.24 10.74 85.03 0.91 3.16 16 26 S 0.28 7.44 21.89 -56.49 -1.24 6.20 16 27 H 0.03 1.45 6.06 -2.39 -0.01 1.43 16 28 H 0.04 1.82 7.79 -2.39 -0.02 1.80 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.09 4.89 5.95 -2.38 -0.01 4.87 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.20 5.26 8.06 -2.91 -0.02 5.24 16 34 H 0.15 2.11 7.87 -2.91 -0.02 2.09 16 35 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 36 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.16 2.70 7.24 -2.91 -0.02 2.67 16 Total: -1.00 -68.72 336.29 3.78 -64.93 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.11 Total: 9.69 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 5.89 Total: -5.89 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -3.71 Total: -76.93 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -0.29 Total: -42.61 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 7.44 SS G_CDS: -1.24 Total: 6.20 kcal Total: -68.72 3.78 -64.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.646 kcal (2) G-P(sol) polarization free energy of solvation -68.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds