Wall clock time and date at job start Tue Mar 31 2020 11:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36877 * 126.39817 * 2 1 4 4 C 1.34669 * 106.81578 * 180.02562 * 3 2 1 5 5 N 1.34127 * 108.02108 * 359.77245 * 4 3 2 6 6 C 1.30496 * 109.25516 * 0.37734 * 5 4 3 7 7 C 1.50696 * 125.64987 * 179.89226 * 6 5 4 8 8 O 1.45205 * 109.47304 * 269.68758 * 7 6 5 9 9 C 1.34783 * 117.00259 * 179.97438 * 8 7 6 10 10 O 1.21529 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.47285 * 119.99831 * 180.02562 * 9 8 7 12 12 C 1.39740 * 120.22283 * 0.02562 * 11 9 8 13 13 C 1.37782 * 119.93120 * 180.02562 * 12 11 9 14 14 C 1.38673 * 120.38982 * 0.02562 * 13 12 11 15 15 C 1.37906 * 120.45555 * 359.97438 * 14 13 12 16 16 C 1.39115 * 120.05043 * 359.71965 * 15 14 13 17 17 S 1.76205 * 120.19284 * 180.27951 * 16 15 14 18 18 C 1.76200 * 99.99699 * 6.86201 * 17 16 15 19 19 H 1.07997 * 120.00569 * 5.66212 * 18 17 16 20 20 C 1.38823 * 119.99608 * 185.65646 * 18 17 16 21 21 N 1.31537 * 120.00294 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99549 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46747 * 90.00717 * 22 20 18 24 24 H 1.48501 * 109.46945 * 210.00097 * 22 20 18 25 25 H 1.48495 * 109.47710 * 330.00575 * 22 20 18 26 26 H 1.09004 * 109.47261 * 269.98203 * 1 2 3 27 27 H 1.09000 * 109.47107 * 29.97730 * 1 2 3 28 28 H 1.08991 * 109.47509 * 149.97616 * 1 2 3 29 29 H 1.08002 * 126.59168 * 0.05028 * 3 2 1 30 30 H 1.08004 * 125.98894 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47496 * 149.68824 * 7 6 5 32 32 H 1.09004 * 109.47508 * 29.68789 * 7 6 5 33 33 H 1.07998 * 120.03545 * 359.97438 * 12 11 9 34 34 H 1.07994 * 119.80035 * 179.97438 * 13 12 11 35 35 H 1.08001 * 119.77188 * 179.97438 * 14 13 12 36 36 H 1.07998 * 119.97308 * 180.02562 * 15 14 13 37 37 H 0.96994 * 120.00465 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6504 -0.0006 5 7 3.5095 -0.6904 0.0041 6 6 2.2663 -1.0870 -0.0005 7 6 1.8017 -2.5206 0.0002 8 8 1.6513 -2.9813 -1.3686 9 6 1.2398 -4.2527 -1.5446 10 8 1.0124 -4.9567 -0.5805 11 6 1.0656 -4.7886 -2.9054 12 6 1.3263 -3.9832 -4.0173 13 6 1.1609 -4.4906 -5.2876 14 6 0.7360 -5.7978 -5.4711 15 6 0.4742 -6.6066 -4.3852 16 6 0.6411 -6.1155 -3.0944 17 16 0.3147 -7.1480 -1.7043 18 6 0.0305 -8.6822 -2.5229 19 1 0.1818 -8.7616 -3.5893 20 6 -0.3879 -9.7891 -1.7970 21 7 -0.5726 -9.6925 -0.4983 22 14 -0.6899 -11.4154 -2.6650 23 1 0.5649 -12.2095 -2.6791 24 1 -1.7462 -12.1717 -1.9456 25 1 -1.1285 -11.1581 -4.0602 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8897 -0.5141 29 1 1.9613 2.1345 0.0008 30 1 4.4369 1.2610 -0.0003 31 1 0.8436 -2.5918 0.5148 32 1 2.5368 -3.1406 0.5135 33 1 1.6563 -2.9640 -3.8810 34 1 1.3626 -3.8662 -6.1453 35 1 0.6093 -6.1851 -6.4712 36 1 0.1441 -7.6236 -4.5371 37 1 -0.8646 -10.4659 0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810188874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:20 Heat of formation + Delta-G solvation = 12.673057 kcal Electronic energy + Delta-G solvation = -22996.839143 eV Core-core repulsion = 19446.129739 eV Total energy + Delta-G solvation = -3550.709404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.25690 -39.93679 -37.90096 -35.97814 -34.21038 -32.84626 -31.42384 -30.47086 -30.35790 -27.47795 -26.46412 -25.91301 -23.60399 -22.01532 -21.57604 -20.63603 -20.08083 -18.21713 -17.43493 -17.30439 -16.53538 -16.03219 -15.81463 -15.63671 -15.16224 -14.61350 -14.35029 -14.15690 -13.86604 -13.51769 -13.17713 -13.13605 -13.00052 -12.98216 -12.88263 -12.23004 -12.00414 -11.61134 -11.27633 -11.24892 -11.00076 -10.48243 -10.39797 -10.23482 -10.13108 -9.82963 -9.79874 -9.59004 -8.81729 -8.65964 -8.43984 -8.28229 -6.66657 -6.55376 -4.27074 1.33209 1.66020 1.98297 2.50772 2.76254 3.03598 3.08403 3.15319 3.16250 3.30277 3.42180 3.97916 4.27298 4.37000 4.46539 4.58704 4.84554 4.86734 5.00050 5.04430 5.13925 5.23121 5.27632 5.43023 5.47289 5.58564 5.60879 5.90486 6.05334 6.10392 6.28826 6.54541 6.56458 6.71123 6.82485 6.91066 7.01395 7.06934 7.37580 7.52438 7.92503 8.07926 8.32785 8.91228 10.48236 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.020177 B = 0.003212 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.368049 B = 8714.222984 C = 9643.382384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.449 5.449 3 C -0.051 4.051 4 C -0.029 4.029 5 N -0.469 5.469 6 C 0.204 3.796 7 C 0.155 3.845 8 O -0.357 6.357 9 C 0.499 3.501 10 O -0.482 6.482 11 C -0.166 4.166 12 C -0.037 4.037 13 C -0.191 4.191 14 C -0.068 4.068 15 C -0.156 4.156 16 C -0.054 4.054 17 S 0.186 5.814 18 C -0.595 4.595 19 H 0.093 0.907 20 C 0.084 3.916 21 N -0.856 5.856 22 Si 0.921 3.079 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.267 1.267 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.177 0.823 30 H 0.173 0.827 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.142 0.858 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 18.229 -1.882 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.132 5.132 3 C -0.185 4.185 4 C -0.178 4.178 5 N -0.189 5.189 6 C -0.057 4.057 7 C 0.080 3.920 8 O -0.274 6.274 9 C 0.344 3.656 10 O -0.371 6.371 11 C -0.179 4.179 12 C -0.057 4.057 13 C -0.215 4.215 14 C -0.090 4.090 15 C -0.180 4.180 16 C -0.174 4.174 17 S 0.451 5.549 18 C -0.741 4.741 19 H 0.111 0.889 20 C -0.127 4.127 21 N -0.488 5.488 22 Si 0.747 3.253 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.191 1.191 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.194 0.806 30 H 0.190 0.810 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.159 0.841 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.066 17.315 0.115 17.348 hybrid contribution -0.888 -0.529 -1.781 2.059 sum 0.178 16.785 -1.666 16.869 Atomic orbital electron populations 1.22153 0.76258 1.05319 1.03894 1.45324 1.07868 1.06545 1.53511 1.22764 0.91377 0.92508 1.11859 1.22358 0.96546 0.90993 1.07882 1.70250 1.18312 1.12198 1.18095 1.22628 0.85881 0.89785 1.07423 1.20793 1.02255 0.86407 0.82578 1.86588 1.80083 1.31040 1.29704 1.21191 0.74916 0.78988 0.90457 1.90857 1.47131 1.57277 1.41865 1.18240 1.15860 0.94579 0.89246 1.21090 0.94524 0.98302 0.91769 1.20713 1.08070 0.96394 0.96329 1.21159 0.95898 0.93787 0.98157 1.21398 1.04291 1.01391 0.90967 1.23064 0.96867 0.96114 1.01314 1.84648 1.70795 0.98226 1.01199 1.24029 1.53598 0.97718 0.98760 0.88885 1.25122 0.93118 0.99654 0.94848 1.69954 1.40987 1.31776 1.06126 0.86107 0.78517 0.81047 0.79672 1.19755 1.20414 1.19142 0.90148 0.89252 0.88935 0.80604 0.81027 0.89715 0.87882 0.85979 0.86780 0.86752 0.84080 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 10.79 59.85 0.65 1.11 16 2 N -0.45 -4.84 3.15 -121.28 -0.38 -5.22 16 3 C -0.05 -0.49 11.58 -16.56 -0.19 -0.68 16 4 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 5 N -0.47 -7.07 11.25 -10.82 -0.12 -7.19 16 6 C 0.20 2.84 7.54 -155.42 -1.17 1.66 16 7 C 0.16 2.26 5.56 36.00 0.20 2.46 16 8 O -0.36 -6.04 9.45 -40.72 -0.38 -6.43 16 9 C 0.50 9.90 7.87 34.41 0.27 10.18 16 10 O -0.48 -10.78 13.57 -19.29 -0.26 -11.04 16 11 C -0.17 -3.35 5.89 -104.77 -0.62 -3.96 16 12 C -0.04 -0.63 9.61 -39.19 -0.38 -1.01 16 13 C -0.19 -3.00 10.02 -39.59 -0.40 -3.39 16 14 C -0.07 -1.13 10.02 -39.54 -0.40 -1.53 16 15 C -0.16 -3.17 9.22 -39.38 -0.36 -3.54 16 16 C -0.05 -1.21 6.15 -38.37 -0.24 -1.44 16 17 S 0.19 4.84 18.56 -107.50 -2.00 2.84 16 18 C -0.59 -15.93 9.00 30.95 0.28 -15.65 16 19 H 0.09 2.36 4.98 -52.49 -0.26 2.09 16 20 C 0.08 2.24 5.49 -17.46 -0.10 2.14 16 21 N -0.86 -24.01 13.22 55.49 0.73 -23.28 16 22 Si 0.92 20.15 29.55 -169.99 -5.02 15.13 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.72 7.66 -51.93 -0.40 0.32 16 29 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 31 H 0.08 1.08 7.70 -51.93 -0.40 0.68 16 32 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.12 1.83 7.61 -52.49 -0.40 1.43 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.14 2.96 5.04 -52.49 -0.26 2.70 16 37 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -32.83 338.64 -8.81 -41.64 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -3.82 Total: 2.64 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -2.66 Total: -14.19 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.23 Total: -35.69 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.65 Total: -17.47 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -2.00 Total: 2.84 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.83 -8.81 -41.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810188874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.312 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds