Wall clock time and date at job start Tue Mar 31 2020 11:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36877 * 126.39817 * 2 1 4 4 C 1.34669 * 106.81578 * 180.02562 * 3 2 1 5 5 N 1.34127 * 108.02108 * 359.77245 * 4 3 2 6 6 C 1.30496 * 109.25516 * 0.37734 * 5 4 3 7 7 C 1.50696 * 125.64987 * 179.89226 * 6 5 4 8 8 O 1.45205 * 109.47304 * 269.68758 * 7 6 5 9 9 C 1.34783 * 117.00259 * 179.97438 * 8 7 6 10 10 O 1.21529 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.47285 * 119.99831 * 180.02562 * 9 8 7 12 12 C 1.39740 * 120.22283 * 0.02562 * 11 9 8 13 13 C 1.37782 * 119.93120 * 180.02562 * 12 11 9 14 14 C 1.38673 * 120.38982 * 0.02562 * 13 12 11 15 15 C 1.37906 * 120.45555 * 359.97438 * 14 13 12 16 16 C 1.39115 * 120.05043 * 359.71965 * 15 14 13 17 17 S 1.76205 * 120.19284 * 180.27951 * 16 15 14 18 18 C 1.76200 * 99.99699 * 6.86201 * 17 16 15 19 19 H 1.07997 * 120.00569 * 5.66212 * 18 17 16 20 20 C 1.38823 * 119.99608 * 185.65646 * 18 17 16 21 21 N 1.31537 * 120.00294 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99549 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46747 * 90.00717 * 22 20 18 24 24 H 1.48501 * 109.46945 * 210.00097 * 22 20 18 25 25 H 1.48495 * 109.47710 * 330.00575 * 22 20 18 26 26 H 1.09004 * 109.47261 * 269.98203 * 1 2 3 27 27 H 1.09000 * 109.47107 * 29.97730 * 1 2 3 28 28 H 1.08991 * 109.47509 * 149.97616 * 1 2 3 29 29 H 1.08002 * 126.59168 * 0.05028 * 3 2 1 30 30 H 1.08004 * 125.98894 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47496 * 149.68824 * 7 6 5 32 32 H 1.09004 * 109.47508 * 29.68789 * 7 6 5 33 33 H 1.07998 * 120.03545 * 359.97438 * 12 11 9 34 34 H 1.07994 * 119.80035 * 179.97438 * 13 12 11 35 35 H 1.08001 * 119.77188 * 179.97438 * 14 13 12 36 36 H 1.07998 * 119.97308 * 180.02562 * 15 14 13 37 37 H 0.96994 * 120.00465 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6504 -0.0006 5 7 3.5095 -0.6904 0.0041 6 6 2.2663 -1.0870 -0.0005 7 6 1.8017 -2.5206 0.0002 8 8 1.6513 -2.9813 -1.3686 9 6 1.2398 -4.2527 -1.5446 10 8 1.0124 -4.9567 -0.5805 11 6 1.0656 -4.7886 -2.9054 12 6 1.3263 -3.9832 -4.0173 13 6 1.1609 -4.4906 -5.2876 14 6 0.7360 -5.7978 -5.4711 15 6 0.4742 -6.6066 -4.3852 16 6 0.6411 -6.1155 -3.0944 17 16 0.3147 -7.1480 -1.7043 18 6 0.0305 -8.6822 -2.5229 19 1 0.1818 -8.7616 -3.5893 20 6 -0.3879 -9.7891 -1.7970 21 7 -0.5726 -9.6925 -0.4983 22 14 -0.6899 -11.4154 -2.6650 23 1 0.5649 -12.2095 -2.6791 24 1 -1.7462 -12.1717 -1.9456 25 1 -1.1285 -11.1581 -4.0602 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8897 -0.5141 29 1 1.9613 2.1345 0.0008 30 1 4.4369 1.2610 -0.0003 31 1 0.8436 -2.5918 0.5148 32 1 2.5368 -3.1406 0.5135 33 1 1.6563 -2.9640 -3.8810 34 1 1.3626 -3.8662 -6.1453 35 1 0.6093 -6.1851 -6.4712 36 1 0.1441 -7.6236 -4.5371 37 1 -0.8646 -10.4659 0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810188874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:19 Heat of formation + Delta-G solvation = -6.316116 kcal Electronic energy + Delta-G solvation = -22997.662576 eV Core-core repulsion = 19446.129739 eV Total energy + Delta-G solvation = -3551.532836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.13867 -41.46366 -39.40155 -37.50318 -35.01716 -34.79632 -32.73043 -31.90393 -31.68644 -28.29621 -27.87293 -27.41210 -25.07887 -23.51637 -22.40513 -22.16109 -21.06072 -19.96218 -18.93127 -18.42474 -17.87571 -17.42085 -17.26549 -16.94035 -16.57967 -15.81724 -15.69647 -15.47218 -15.20478 -14.79031 -14.63821 -14.31178 -14.26720 -13.92896 -13.62929 -13.53361 -13.41866 -13.21433 -12.99272 -12.95010 -12.56981 -12.06619 -11.88687 -11.87591 -11.49340 -11.39549 -11.06538 -10.65949 -10.48294 -10.15436 -9.93096 -9.49366 -8.55279 -8.48682 -6.28935 -0.19133 0.48592 0.68830 1.25737 1.37636 1.45028 1.54176 1.60476 1.63315 1.86092 2.17726 2.29144 2.82482 2.95027 3.17982 3.22371 3.67399 3.82995 3.92009 4.01719 4.15723 4.22415 4.24804 4.35830 4.54200 4.57675 4.59908 4.65775 4.72181 4.75598 5.05502 5.21090 5.26618 5.33824 5.43985 5.52501 5.62702 5.76538 6.05022 6.08029 6.12866 6.78071 6.93448 7.03042 8.57430 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.020177 B = 0.003212 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.368049 B = 8714.222984 C = 9643.382384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.445 5.445 3 C -0.025 4.025 4 C -0.057 4.057 5 N -0.509 5.509 6 C 0.172 3.828 7 C 0.157 3.843 8 O -0.349 6.349 9 C 0.502 3.498 10 O -0.513 6.513 11 C -0.174 4.174 12 C -0.036 4.036 13 C -0.161 4.161 14 C -0.054 4.054 15 C -0.174 4.174 16 C -0.064 4.064 17 S 0.074 5.926 18 C -0.602 4.602 19 H 0.099 0.901 20 C 0.027 3.973 21 N -0.903 5.903 22 Si 0.994 3.006 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.255 1.255 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.223 0.777 30 H 0.194 0.806 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.128 0.872 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 21.376 -5.180 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.128 5.128 3 C -0.159 4.159 4 C -0.205 4.205 5 N -0.230 5.230 6 C -0.089 4.089 7 C 0.082 3.918 8 O -0.265 6.265 9 C 0.348 3.652 10 O -0.404 6.404 11 C -0.185 4.185 12 C -0.055 4.055 13 C -0.184 4.184 14 C -0.075 4.075 15 C -0.199 4.199 16 C -0.182 4.182 17 S 0.334 5.666 18 C -0.748 4.748 19 H 0.117 0.883 20 C -0.179 4.179 21 N -0.537 5.537 22 Si 0.815 3.185 23 H -0.192 1.192 24 H -0.198 1.198 25 H -0.179 1.179 26 H 0.115 0.885 27 H 0.139 0.861 28 H 0.099 0.901 29 H 0.239 0.761 30 H 0.211 0.789 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.167 0.833 34 H 0.183 0.817 35 H 0.175 0.825 36 H 0.146 0.854 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.024 20.541 -3.249 20.821 hybrid contribution -0.750 -1.037 -0.933 1.584 sum 0.274 19.503 -4.181 19.949 Atomic orbital electron populations 1.22443 0.74113 1.06318 1.05335 1.45555 1.09202 1.05963 1.52072 1.23488 0.90388 0.93813 1.08259 1.22889 0.98646 0.89990 1.08986 1.70150 1.19439 1.14496 1.18920 1.22239 0.86418 0.89822 1.10403 1.20844 1.02571 0.87304 0.81121 1.86558 1.79225 1.29255 1.31489 1.21322 0.74058 0.79546 0.90267 1.90861 1.48253 1.58329 1.42916 1.18582 1.15143 0.94188 0.90608 1.21463 0.93656 0.99092 0.91297 1.21347 1.03800 0.96054 0.97198 1.21637 0.93390 0.93691 0.98796 1.21469 1.05392 1.01685 0.91326 1.22966 0.98306 0.96422 1.00488 1.84806 1.76042 1.00615 1.05175 1.24225 1.53712 0.97955 0.98912 0.88324 1.26150 0.92876 1.03401 0.95506 1.70101 1.43030 1.32775 1.07818 0.85019 0.78493 0.76168 0.78818 1.19245 1.19839 1.17875 0.88545 0.86119 0.90082 0.76051 0.78937 0.88454 0.89434 0.83291 0.81655 0.82501 0.85432 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 10.79 127.77 1.38 2.05 16 2 N -0.45 -8.60 3.15 -537.62 -1.69 -10.29 16 3 C -0.02 -0.39 11.58 83.09 0.96 0.57 16 4 C -0.06 -1.20 11.87 83.52 0.99 -0.21 16 5 N -0.51 -15.23 11.25 -188.14 -2.12 -17.34 16 6 C 0.17 4.71 7.54 138.13 1.04 5.75 16 7 C 0.16 4.72 5.56 71.23 0.40 5.12 16 8 O -0.35 -11.90 9.45 -56.94 -0.54 -12.44 16 9 C 0.50 20.57 7.87 70.20 0.55 21.13 16 10 O -0.51 -24.57 13.57 19.74 0.27 -24.30 16 11 C -0.17 -6.98 5.89 -19.96 -0.12 -7.09 16 12 C -0.04 -1.09 9.61 22.53 0.22 -0.87 16 13 C -0.16 -4.16 10.02 22.27 0.22 -3.94 16 14 C -0.05 -1.58 10.02 22.30 0.22 -1.36 16 15 C -0.17 -6.98 9.22 22.40 0.21 -6.77 16 16 C -0.06 -2.95 6.15 23.06 0.14 -2.80 16 17 S 0.07 4.12 18.56 -56.49 -1.05 3.07 16 18 C -0.60 -34.01 9.00 67.96 0.61 -33.40 16 19 H 0.10 5.21 4.98 -2.91 -0.01 5.20 16 20 C 0.03 1.49 5.49 84.88 0.47 1.96 16 21 N -0.90 -53.80 13.22 21.65 0.29 -53.52 16 22 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 1.14 7.66 -2.39 -0.02 1.12 16 29 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 30 H 0.19 2.94 8.06 -2.91 -0.02 2.91 16 31 H 0.10 2.61 7.70 -2.39 -0.02 2.59 16 32 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 33 H 0.15 3.82 7.61 -2.91 -0.02 3.80 16 34 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 35 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.13 5.44 5.04 -2.91 -0.01 5.43 16 37 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -79.10 338.64 5.59 -73.51 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.11 Total: 16.51 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 7.29 Total: -19.87 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -3.53 Total: -81.15 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.27 Total: -36.74 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.05 Total: 3.07 kcal Total: -79.10 5.59 -73.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810188874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.196 kcal (2) G-P(sol) polarization free energy of solvation -79.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds