Wall clock time and date at job start Tue Mar 31 2020 11:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47023 * 2 1 4 4 H 1.08999 * 109.47617 * 55.00327 * 3 2 1 5 5 C 1.50701 * 109.47247 * 175.00230 * 3 2 1 6 6 H 1.08000 * 120.00699 * 119.99850 * 5 3 2 7 7 C 1.37878 * 119.99791 * 300.00097 * 5 3 2 8 8 N 1.31516 * 119.99893 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00207 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47000 * 89.99903 * 9 7 5 11 11 H 1.48506 * 109.47088 * 209.99790 * 9 7 5 12 12 H 1.48499 * 109.47026 * 329.99944 * 9 7 5 13 13 O 1.45200 * 109.47095 * 294.99498 * 3 2 1 14 14 C 1.34755 * 116.99555 * 90.00595 * 13 3 2 15 15 O 1.21502 * 120.00284 * 359.97438 * 14 13 3 16 16 C 1.47499 * 120.00046 * 180.02562 * 14 13 3 17 17 C 1.39817 * 120.03336 * 179.97438 * 16 14 13 18 18 C 1.37113 * 119.97176 * 179.97438 * 17 16 14 19 19 C 1.39566 * 120.02981 * 0.02562 * 18 17 16 20 20 C 1.48210 * 119.96897 * 179.97438 * 19 18 17 21 21 C 1.36614 * 123.97464 * 180.02562 * 20 19 18 22 22 S 1.72096 * 104.12348 * 180.29827 * 21 20 19 23 23 N 1.56453 * 96.05784 * 359.63222 * 22 21 20 24 24 N 1.27489 * 109.56963 * 0.38110 * 23 22 21 25 25 C 1.39555 * 120.06034 * 0.27345 * 19 18 17 26 26 C 1.37118 * 120.03140 * 359.45148 * 25 19 18 27 27 H 1.09004 * 109.47378 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47393 * 299.99809 * 1 2 3 29 29 H 1.09000 * 109.47492 * 59.99932 * 1 2 3 30 30 H 1.08999 * 109.47049 * 239.99874 * 2 1 3 31 31 H 1.08996 * 109.47056 * 119.99815 * 2 1 3 32 32 H 0.97002 * 120.00219 * 179.97438 * 8 7 5 33 33 H 1.07997 * 120.01190 * 0.02562 * 17 16 14 34 34 H 1.08001 * 119.98597 * 180.02562 * 18 17 16 35 35 H 1.08002 * 127.93550 * 0.03359 * 21 20 19 36 36 H 1.07999 * 119.98572 * 179.69792 * 25 19 18 37 37 H 1.08002 * 120.01648 * 180.25139 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 3.4061 0.3374 2.1732 9 14 6.0050 0.8800 1.3811 10 1 6.4427 2.1129 2.0836 11 1 6.4390 -0.3111 2.1546 12 1 6.6131 0.8394 0.0269 13 8 1.6559 2.0916 -1.2408 14 6 0.4681 2.7279 -1.2561 15 8 -0.2278 2.7395 -0.2601 16 6 0.0122 3.4092 -2.4822 17 6 -1.2203 4.0692 -2.4990 18 6 -1.6426 4.7026 -3.6394 19 6 -0.8431 4.6884 -4.7832 20 6 -1.3012 5.3730 -6.0153 21 6 -0.5862 5.4101 -7.1788 22 16 -1.5731 6.3280 -8.2490 23 7 -2.7364 6.5728 -7.2318 24 7 -2.4523 6.0221 -6.1176 25 6 0.3845 4.0248 -4.7698 26 6 0.8119 3.3953 -3.6291 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0611 2.9499 33 1 -1.8390 4.0807 -1.6139 34 1 -2.5944 5.2128 -3.6525 35 1 0.3789 4.9689 -7.3795 36 1 1.0000 4.0104 -5.6571 37 1 1.7638 2.8852 -3.6177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860694315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:50 Heat of formation + Delta-G solvation = 3.725703 kcal Electronic energy + Delta-G solvation = -22984.412210 eV Core-core repulsion = 19433.314819 eV Total energy + Delta-G solvation = -3551.097391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30479 -39.94735 -38.55112 -35.79751 -33.67379 -33.37494 -31.47906 -31.22895 -30.13304 -27.52111 -27.21201 -24.74132 -23.18096 -22.65347 -21.73194 -20.65700 -19.60581 -19.03046 -17.72315 -16.69990 -16.52039 -16.07301 -15.82544 -15.50860 -15.31609 -14.85542 -14.46253 -14.15615 -13.62980 -13.29091 -13.09507 -12.87910 -12.78424 -12.38119 -12.14221 -11.93446 -11.52179 -11.37912 -11.21960 -11.13575 -10.97078 -10.68809 -10.68079 -10.51885 -10.30751 -10.24298 -9.84442 -9.70142 -9.40952 -9.15588 -8.83536 -8.66909 -8.47627 -6.20919 -4.28204 -0.26313 0.50267 0.69383 1.27621 1.30975 1.99305 3.09394 3.22666 3.28120 3.31351 3.52246 3.58037 3.91938 4.27875 4.31179 4.52044 4.74417 4.83399 5.00252 5.11099 5.26586 5.28992 5.55016 5.71079 5.93769 6.18429 6.22082 6.22629 6.28414 6.39255 6.47104 6.69579 6.85171 6.94564 7.14764 7.20872 7.35012 7.58592 7.70922 7.90223 8.12369 8.57470 8.84372 9.36963 10.85870 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.025686 B = 0.002541 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.820627 B =11017.355079 C =11739.152063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.492 3.508 15 O -0.509 6.509 16 C -0.096 4.096 17 C -0.062 4.062 18 C -0.097 4.097 19 C -0.004 4.004 20 C 0.072 3.928 21 C -0.288 4.288 22 S 0.433 5.567 23 N -0.286 5.286 24 N -0.227 5.227 25 C -0.109 4.109 26 C -0.063 4.063 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.267 0.733 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.202 0.798 36 H 0.132 0.868 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 8.760 -20.009 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.266 6.266 14 C 0.336 3.664 15 O -0.400 6.400 16 C -0.098 4.098 17 C -0.080 4.080 18 C -0.116 4.116 19 C -0.008 4.008 20 C -0.070 4.070 21 C -0.444 4.444 22 S 0.569 5.431 23 N -0.265 5.265 24 N -0.095 5.095 25 C -0.128 4.128 26 C -0.081 4.081 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.219 0.781 36 H 0.150 0.850 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.556 9.702 -20.360 24.122 hybrid contribution 1.901 -0.978 1.177 2.440 sum -6.656 8.724 -19.183 22.100 Atomic orbital electron populations 1.21866 0.98354 0.99076 1.00783 1.22019 0.92656 0.99271 1.03408 1.20722 0.95065 0.88784 0.78478 0.93407 1.21022 0.89567 1.39057 1.06302 0.91304 1.24886 0.99239 0.94744 0.95069 1.69889 1.35408 1.37745 1.09446 0.86285 0.83865 0.77711 0.78345 1.20411 1.20945 1.19594 1.86530 1.33454 1.62321 1.44255 1.20891 0.81203 0.77034 0.87226 1.90791 1.55491 1.58510 1.35169 1.19671 0.96025 1.00736 0.93336 1.21165 0.94439 0.93815 0.98584 1.21047 1.00068 0.99073 0.91366 1.17913 0.95049 0.97917 0.89939 1.20871 0.90667 0.99921 0.95577 1.28383 1.08975 1.09152 0.97920 1.81457 1.04779 1.34503 1.22378 1.78790 1.23350 1.22601 1.01803 1.71403 1.16005 1.08713 1.13393 1.20928 0.94964 0.98055 0.98888 1.21373 0.99766 0.96019 0.90950 0.94768 0.92770 0.94950 0.93927 0.87286 0.92349 0.83920 0.84235 0.78084 0.85017 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.56 37.16 0.32 -2.81 16 2 C -0.14 -3.31 5.49 -26.74 -0.15 -3.46 16 3 C 0.22 5.77 2.25 -27.89 -0.06 5.71 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.24 8.90 -34.44 -0.31 -14.55 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.70 11.29 55.43 0.63 -24.07 16 9 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 O -0.35 -8.02 9.04 -40.64 -0.37 -8.39 16 14 C 0.49 10.19 6.34 34.50 0.22 10.41 16 15 O -0.51 -11.64 13.52 -19.27 -0.26 -11.90 16 16 C -0.10 -1.54 5.88 -104.94 -0.62 -2.16 16 17 C -0.06 -0.87 9.56 -39.40 -0.38 -1.25 16 18 C -0.10 -1.18 9.61 -39.49 -0.38 -1.56 16 19 C 0.00 -0.05 5.88 -104.81 -0.62 -0.67 16 20 C 0.07 0.75 6.76 -84.05 -0.57 0.19 16 21 C -0.29 -2.02 10.76 30.15 0.32 -1.70 16 22 S 0.43 2.78 23.39 -107.50 -2.51 0.26 16 23 N -0.29 -3.05 12.51 60.35 0.76 -2.30 16 24 N -0.23 -2.72 11.15 32.46 0.36 -2.35 16 25 C -0.11 -1.15 9.47 -39.50 -0.37 -1.52 16 26 C -0.06 -0.84 9.58 -39.40 -0.38 -1.22 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 29 H 0.03 0.68 6.06 -51.93 -0.31 0.36 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.14 1.97 7.64 -52.49 -0.40 1.57 16 34 H 0.14 1.56 7.74 -52.49 -0.41 1.15 16 35 H 0.20 0.76 7.15 -52.49 -0.38 0.39 16 36 H 0.13 0.93 6.82 -52.49 -0.36 0.58 16 37 H 0.15 1.94 7.60 -52.49 -0.40 1.54 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -31.41 332.40 -8.20 -39.60 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.73 Total: 1.49 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -3.06 Total: -12.98 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 1.74 Total: -28.72 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.63 Total: -20.29 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.51 Total: 0.26 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.41 -8.20 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860694315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.329 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds