Wall clock time and date at job start Tue Mar 31 2020 11:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47023 * 2 1 4 4 H 1.08999 * 109.47617 * 55.00327 * 3 2 1 5 5 C 1.50701 * 109.47247 * 175.00230 * 3 2 1 6 6 H 1.08000 * 120.00699 * 119.99850 * 5 3 2 7 7 C 1.37878 * 119.99791 * 300.00097 * 5 3 2 8 8 N 1.31516 * 119.99893 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00207 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47000 * 89.99903 * 9 7 5 11 11 H 1.48506 * 109.47088 * 209.99790 * 9 7 5 12 12 H 1.48499 * 109.47026 * 329.99944 * 9 7 5 13 13 O 1.45200 * 109.47095 * 294.99498 * 3 2 1 14 14 C 1.34755 * 116.99555 * 90.00595 * 13 3 2 15 15 O 1.21502 * 120.00284 * 359.97438 * 14 13 3 16 16 C 1.47499 * 120.00046 * 180.02562 * 14 13 3 17 17 C 1.39817 * 120.03336 * 179.97438 * 16 14 13 18 18 C 1.37113 * 119.97176 * 179.97438 * 17 16 14 19 19 C 1.39566 * 120.02981 * 0.02562 * 18 17 16 20 20 C 1.48210 * 119.96897 * 179.97438 * 19 18 17 21 21 C 1.36614 * 123.97464 * 180.02562 * 20 19 18 22 22 S 1.72096 * 104.12348 * 180.29827 * 21 20 19 23 23 N 1.56453 * 96.05784 * 359.63222 * 22 21 20 24 24 N 1.27489 * 109.56963 * 0.38110 * 23 22 21 25 25 C 1.39555 * 120.06034 * 0.27345 * 19 18 17 26 26 C 1.37118 * 120.03140 * 359.45148 * 25 19 18 27 27 H 1.09004 * 109.47378 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47393 * 299.99809 * 1 2 3 29 29 H 1.09000 * 109.47492 * 59.99932 * 1 2 3 30 30 H 1.08999 * 109.47049 * 239.99874 * 2 1 3 31 31 H 1.08996 * 109.47056 * 119.99815 * 2 1 3 32 32 H 0.97002 * 120.00219 * 179.97438 * 8 7 5 33 33 H 1.07997 * 120.01190 * 0.02562 * 17 16 14 34 34 H 1.08001 * 119.98597 * 180.02562 * 18 17 16 35 35 H 1.08002 * 127.93550 * 0.03359 * 21 20 19 36 36 H 1.07999 * 119.98572 * 179.69792 * 25 19 18 37 37 H 1.08002 * 120.01648 * 180.25139 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 3.4061 0.3374 2.1732 9 14 6.0050 0.8800 1.3811 10 1 6.4427 2.1129 2.0836 11 1 6.4390 -0.3111 2.1546 12 1 6.6131 0.8394 0.0269 13 8 1.6559 2.0916 -1.2408 14 6 0.4681 2.7279 -1.2561 15 8 -0.2278 2.7395 -0.2601 16 6 0.0122 3.4092 -2.4822 17 6 -1.2203 4.0692 -2.4990 18 6 -1.6426 4.7026 -3.6394 19 6 -0.8431 4.6884 -4.7832 20 6 -1.3012 5.3730 -6.0153 21 6 -0.5862 5.4101 -7.1788 22 16 -1.5731 6.3280 -8.2490 23 7 -2.7364 6.5728 -7.2318 24 7 -2.4523 6.0221 -6.1176 25 6 0.3845 4.0248 -4.7698 26 6 0.8119 3.3953 -3.6291 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0611 2.9499 33 1 -1.8390 4.0807 -1.6139 34 1 -2.5944 5.2128 -3.6525 35 1 0.3789 4.9689 -7.3795 36 1 1.0000 4.0104 -5.6571 37 1 1.7638 2.8852 -3.6177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860694315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:49 Heat of formation + Delta-G solvation = -14.209334 kcal Electronic energy + Delta-G solvation = -22985.189931 eV Core-core repulsion = 19433.314819 eV Total energy + Delta-G solvation = -3551.875112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04555 -41.45351 -39.75228 -37.58378 -35.51600 -34.37525 -33.34516 -32.29868 -31.09996 -29.30733 -28.09995 -26.05046 -24.97337 -23.62778 -22.91113 -21.91912 -21.29918 -19.78952 -19.26206 -18.51699 -17.77374 -17.15700 -17.07634 -16.75273 -16.52599 -16.28059 -15.74954 -15.25189 -14.85460 -14.73473 -14.55909 -14.28942 -13.85742 -13.66465 -13.37459 -13.30145 -13.11309 -13.03524 -12.81191 -12.75721 -12.56184 -12.14703 -12.10742 -11.76144 -11.52944 -11.48805 -11.33720 -11.14144 -10.82583 -10.81562 -10.52756 -10.13194 -9.62105 -8.26217 -6.43046 -0.93136 -0.47546 0.14771 0.33304 0.67981 1.06192 1.43206 1.44984 1.56425 1.79313 1.97082 2.42625 2.78895 2.80651 3.03750 3.51334 3.78880 3.89234 3.90847 4.00452 4.22099 4.35806 4.37787 4.39237 4.49845 4.54948 4.71228 4.83197 4.98347 5.07104 5.15912 5.21062 5.25293 5.32852 5.40736 5.52273 5.67095 5.70619 5.96280 6.10730 6.61451 6.68836 6.95509 7.28034 8.80736 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.025686 B = 0.002541 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.820627 B =11017.355079 C =11739.152063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.005 0.995 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.981 3.019 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.260 1.260 13 O -0.353 6.353 14 C 0.489 3.511 15 O -0.543 6.543 16 C -0.128 4.128 17 C -0.063 4.063 18 C -0.101 4.101 19 C 0.011 3.989 20 C 0.042 3.958 21 C -0.271 4.271 22 S 0.520 5.480 23 N -0.337 5.337 24 N -0.263 5.263 25 C -0.094 4.094 26 C -0.060 4.060 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.270 0.730 33 H 0.134 0.866 34 H 0.146 0.854 35 H 0.241 0.759 36 H 0.179 0.821 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.538 9.239 -23.678 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.023 0.977 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.805 3.195 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.184 1.184 13 O -0.269 6.269 14 C 0.335 3.665 15 O -0.435 6.435 16 C -0.130 4.130 17 C -0.081 4.081 18 C -0.120 4.120 19 C 0.008 3.992 20 C -0.101 4.101 21 C -0.426 4.426 22 S 0.656 5.344 23 N -0.316 5.316 24 N -0.129 5.129 25 C -0.112 4.112 26 C -0.078 4.078 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.257 0.743 36 H 0.196 0.804 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.145 10.194 -24.041 27.073 hybrid contribution 1.387 -0.996 2.068 2.682 sum -5.758 9.198 -21.973 24.506 Atomic orbital electron populations 1.21718 0.96501 1.00579 0.99984 1.21863 0.94263 0.98068 1.02489 1.20417 0.94697 0.89262 0.78441 0.97701 1.21319 0.90281 1.39889 1.06970 0.91266 1.25820 1.04258 0.93904 0.94379 1.70021 1.37478 1.37977 1.09870 0.85203 0.77668 0.77874 0.78798 1.19981 1.20189 1.18404 1.86506 1.35005 1.62897 1.42527 1.21743 0.79931 0.76218 0.88565 1.90762 1.56060 1.59818 1.36885 1.19470 0.97822 1.03290 0.92420 1.21094 0.93796 0.94093 0.99150 1.21109 1.00689 0.98984 0.91222 1.18130 0.94731 0.96412 0.89966 1.20804 0.91542 1.01578 0.96224 1.28935 1.09802 1.07209 0.96647 1.81168 1.02043 1.31726 1.19504 1.78465 1.26227 1.24291 1.02605 1.71416 1.17205 1.09691 1.14591 1.21267 0.94741 0.96031 0.99193 1.21454 0.99381 0.96126 0.90870 0.91947 0.94651 0.94653 0.93278 0.89489 0.92068 0.84860 0.83609 0.74259 0.80395 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.56 71.98 0.62 -5.23 16 2 C -0.13 -6.51 5.49 30.59 0.17 -6.34 16 3 C 0.22 12.27 2.25 29.85 0.07 12.33 16 4 H 0.01 0.32 7.16 -2.39 -0.02 0.30 16 5 C -0.55 -30.67 8.90 25.60 0.23 -30.44 16 6 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.92 -52.31 11.29 21.45 0.24 -52.07 16 9 Si 0.98 42.34 29.54 68.60 2.03 44.37 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 11 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 13 O -0.35 -16.87 9.04 -56.66 -0.51 -17.39 16 14 C 0.49 21.25 6.34 70.26 0.45 21.70 16 15 O -0.54 -26.54 13.52 19.83 0.27 -26.27 16 16 C -0.13 -4.22 5.88 -20.07 -0.12 -4.34 16 17 C -0.06 -1.83 9.56 22.39 0.21 -1.61 16 18 C -0.10 -2.43 9.61 22.33 0.21 -2.22 16 19 C 0.01 0.23 5.88 -19.99 -0.12 0.11 16 20 C 0.04 0.75 6.76 41.31 0.28 1.03 16 21 C -0.27 -2.48 10.76 67.44 0.73 -1.76 16 22 S 0.52 4.66 23.39 -56.49 -1.32 3.34 16 23 N -0.34 -6.53 12.51 37.02 0.46 -6.07 16 24 N -0.26 -5.87 11.15 -51.22 -0.57 -6.44 16 25 C -0.09 -1.66 9.47 22.32 0.21 -1.44 16 26 C -0.06 -1.52 9.58 22.39 0.21 -1.31 16 27 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 28 H 0.03 1.68 7.79 -2.39 -0.02 1.66 16 29 H 0.03 1.53 6.06 -2.39 -0.01 1.51 16 30 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.09 4.79 5.95 -2.39 -0.01 4.78 16 32 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.13 3.99 7.64 -2.91 -0.02 3.97 16 34 H 0.15 3.28 7.74 -2.91 -0.02 3.26 16 35 H 0.24 0.13 7.15 -2.91 -0.02 0.11 16 36 H 0.18 1.46 6.82 -2.91 -0.02 1.44 16 37 H 0.15 3.73 7.60 -2.91 -0.02 3.70 16 Total: -1.00 -72.87 332.40 5.31 -67.56 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.12 Total: 11.15 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 3.60 Total: -18.17 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: 0.13 Total: -64.59 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -0.24 Total: -43.66 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.32 Total: 3.34 kcal Total: -72.87 5.31 -67.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860694315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.350 kcal (2) G-P(sol) polarization free energy of solvation -72.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds