Wall clock time and date at job start Tue Mar 31 2020 12:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48501 * 109.47251 * 270.00175 * 3 2 1 5 5 H 1.48503 * 109.47003 * 30.00178 * 3 2 1 6 6 H 1.48503 * 109.47279 * 149.99983 * 3 2 1 7 7 C 1.38822 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99877 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00033 * 179.97438 * 9 7 2 11 11 H 1.09008 * 112.84845 * 336.19764 * 10 9 7 12 12 C 1.53775 * 113.69101 * 107.46962 * 10 9 7 13 13 C 1.53779 * 87.08438 * 139.99340 * 12 10 9 14 14 H 1.09002 * 113.61731 * 89.11293 * 13 12 10 15 15 N 1.46500 * 113.68825 * 220.00754 * 13 12 10 16 16 C 1.34778 * 119.99919 * 254.05902 * 15 13 12 17 17 O 1.21528 * 119.99897 * 0.02562 * 16 15 13 18 18 C 1.48088 * 119.99844 * 180.02562 * 16 15 13 19 19 N 1.32700 * 120.59398 * 359.72401 * 18 16 15 20 20 C 1.31720 * 121.24696 * 179.71769 * 19 18 16 21 21 N 1.31535 * 122.33066 * 0.59703 * 20 19 18 22 22 C 1.33232 * 121.07785 * 359.69187 * 21 20 19 23 23 S 1.75737 * 131.39935 * 180.02562 * 22 21 20 24 24 C 1.75352 * 92.19796 * 179.97438 * 23 22 21 25 25 C 1.32143 * 111.48285 * 359.97438 * 24 23 22 26 26 C 1.40609 * 119.07261 * 0.02562 * 22 21 20 27 27 C 1.53777 * 113.61596 * 205.00444 * 10 9 7 28 28 H 0.96992 * 119.99568 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99801 * 0.02562 * 9 7 2 30 30 H 1.08993 * 113.61636 * 25.43703 * 12 10 9 31 31 H 1.09008 * 113.61006 * 254.53946 * 12 10 9 32 32 H 0.96998 * 119.99853 * 74.06469 * 15 13 12 33 33 H 1.07993 * 118.83793 * 180.26739 * 20 19 18 34 34 H 1.08002 * 124.25821 * 180.02562 * 24 23 22 35 35 H 1.07993 * 122.56882 * 180.02562 * 25 24 23 36 36 H 1.08997 * 113.61941 * 105.38208 * 27 10 9 37 37 H 1.09009 * 113.68972 * 334.49288 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0653 -3.5637 -0.4078 12 6 2.0019 -4.4039 1.3412 13 6 1.8500 -5.6984 0.5252 14 1 2.8004 -6.1634 0.2631 15 7 0.8916 -6.6466 1.0985 16 6 1.3329 -7.7592 1.7180 17 8 2.5259 -7.9757 1.8014 18 6 0.3642 -8.7180 2.2971 19 7 -0.9408 -8.4906 2.2175 20 6 -1.8140 -9.3373 2.7232 21 7 -1.4486 -10.4400 3.3401 22 6 -0.1619 -10.7570 3.4777 23 16 0.6207 -12.1352 4.2371 24 6 2.2187 -11.5328 3.8391 25 6 2.1547 -10.3856 3.1864 26 6 0.8148 -9.8927 2.9522 27 6 1.2597 -4.8285 -0.5971 28 1 -0.4849 0.8400 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 1.1246 -4.1599 1.9403 31 1 2.9311 -4.3521 1.9089 32 1 -0.0605 -6.4736 1.0322 33 1 -2.8670 -9.1157 2.6327 34 1 3.1393 -12.0364 4.0946 35 1 3.0352 -9.8560 2.8539 36 1 1.5894 -5.1195 -1.5944 37 1 0.1791 -4.7018 -0.5289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022106732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:38 Heat of formation + Delta-G solvation = 72.256385 kcal Electronic energy + Delta-G solvation = -22774.447217 eV Core-core repulsion = 19258.614291 eV Total energy + Delta-G solvation = -3515.832926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62255 -39.76326 -38.01910 -36.58473 -34.40283 -33.97085 -32.64174 -30.65423 -29.87011 -26.35816 -25.28371 -25.17636 -24.32466 -22.59098 -21.67919 -20.89422 -19.76131 -18.88252 -18.50739 -17.16531 -16.55393 -16.18329 -16.11869 -15.89964 -15.24265 -14.79352 -14.60916 -14.48926 -14.42844 -14.01237 -13.23728 -13.06872 -12.94703 -12.73131 -12.25674 -11.95642 -11.63689 -11.49738 -11.42269 -11.29962 -10.95741 -10.77574 -10.55115 -10.44620 -10.29176 -10.05289 -9.71890 -9.57649 -9.52486 -8.96463 -8.87227 -8.61705 -7.01268 -5.82115 -3.11187 -0.27742 0.19156 0.64440 1.36809 1.75329 2.47368 2.81631 3.40557 3.41420 3.46834 3.48328 3.55134 3.80007 4.01074 4.11792 4.56415 4.64347 4.75616 4.97699 5.16393 5.17406 5.31201 5.43923 5.54223 5.65916 5.73639 5.82575 5.89634 6.05524 6.20181 6.22063 6.26779 6.40682 6.56300 6.65445 7.00069 7.34573 7.53299 7.66877 7.99758 8.36253 9.47695 10.03969 10.38399 11.40213 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.031011 B = 0.002310 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.676951 B =12120.737432 C =12594.519725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.709 5.709 10 C 0.170 3.830 11 H 0.081 0.919 12 C -0.175 4.175 13 C 0.113 3.887 14 H 0.112 0.888 15 N -0.683 5.683 16 C 0.566 3.434 17 O -0.525 6.525 18 C 0.194 3.806 19 N -0.493 5.493 20 C 0.310 3.690 21 N -0.476 5.476 22 C 0.085 3.915 23 S 0.165 5.835 24 C -0.196 4.196 25 C -0.089 4.089 26 C -0.135 4.135 27 C -0.158 4.158 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.412 0.588 33 H 0.212 0.788 34 H 0.182 0.818 35 H 0.173 0.827 36 H 0.069 0.931 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -25.786 6.508 26.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.347 5.347 10 C 0.057 3.943 11 H 0.099 0.901 12 C -0.218 4.218 13 C 0.009 3.991 14 H 0.130 0.870 15 N -0.333 5.333 16 C 0.349 3.651 17 O -0.400 6.400 18 C 0.037 3.963 19 N -0.211 5.211 20 C 0.018 3.982 21 N -0.192 5.192 22 C -0.169 4.169 23 S 0.423 5.577 24 C -0.330 4.330 25 C -0.119 4.119 26 C -0.150 4.150 27 C -0.197 4.197 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.229 0.771 34 H 0.199 0.801 35 H 0.190 0.810 36 H 0.087 0.913 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.511 -26.839 7.235 27.802 hybrid contribution 0.753 2.008 -0.542 2.212 sum 0.242 -24.831 6.692 25.718 Atomic orbital electron populations 1.69656 1.05155 1.25822 1.57367 1.24776 0.95541 0.97840 1.02697 0.86176 0.78697 0.83686 0.77546 1.21644 1.21757 1.20683 1.19312 0.91147 0.84118 1.43055 0.90959 1.42357 1.05725 0.99736 1.86909 1.21332 0.95516 0.84956 0.92501 0.90098 1.24363 1.02054 0.94689 1.00678 1.22677 0.93115 0.87303 0.95972 0.86965 1.45964 1.11644 1.20867 1.54802 1.17642 0.86909 0.81361 0.79195 1.90747 1.15160 1.75635 1.58495 1.21782 0.90889 0.91643 0.92027 1.68232 1.01614 1.32069 1.19139 1.25001 1.00391 0.84210 0.88563 1.67918 1.15777 1.19506 1.16039 1.24120 0.93015 0.99654 1.00160 1.84343 0.95817 1.19326 1.58197 1.25512 1.01458 1.00665 1.05378 1.21089 0.96556 0.95594 0.98652 1.20642 0.95153 0.96899 1.02330 1.23881 1.01452 0.97080 0.97336 0.93415 0.78027 0.90033 0.92026 0.75152 0.77137 0.80090 0.81028 0.91267 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.67 9.97 -15.05 -0.15 -6.82 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.21 5.40 -52.64 -0.28 -17.50 16 10 C 0.17 3.21 4.48 -67.13 -0.30 2.91 16 11 H 0.08 1.51 8.10 -51.92 -0.42 1.09 16 12 C -0.18 -2.99 7.68 -25.92 -0.20 -3.19 16 13 C 0.11 1.64 4.22 -67.12 -0.28 1.35 16 14 H 0.11 1.62 7.50 -51.93 -0.39 1.23 16 15 N -0.68 -9.06 5.36 -53.88 -0.29 -9.35 16 16 C 0.57 7.87 7.82 -12.22 -0.10 7.78 16 17 O -0.52 -8.18 14.20 5.34 0.08 -8.10 16 18 C 0.19 2.45 6.85 -82.07 -0.56 1.89 16 19 N -0.49 -5.65 9.65 -10.79 -0.10 -5.76 16 20 C 0.31 3.04 12.25 -92.44 -1.13 1.91 16 21 N -0.48 -5.30 10.45 -13.28 -0.14 -5.43 16 22 C 0.08 0.95 7.70 -16.05 -0.12 0.82 16 23 S 0.16 1.33 23.23 -107.50 -2.50 -1.17 16 24 C -0.20 -1.46 11.03 28.81 0.32 -1.14 16 25 C -0.09 -0.90 9.63 -38.96 -0.38 -1.28 16 26 C -0.13 -1.61 6.02 -105.08 -0.63 -2.24 16 27 C -0.16 -2.40 7.58 -25.92 -0.20 -2.59 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.39 9.89 7.93 -40.82 -0.32 9.57 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.41 5.00 8.09 -40.82 -0.33 4.67 16 33 H 0.21 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.17 1.80 6.48 -52.49 -0.34 1.46 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.29 8.09 -51.92 -0.42 0.87 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -31.82 335.81 -10.19 -42.01 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -3.88 Total: 11.17 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -3.83 Total: -1.04 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.09 Total: -65.01 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.50 Total: -1.17 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.82 -10.19 -42.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022106732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.270 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds