Wall clock time and date at job start Tue Mar 31 2020 12:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48501 * 109.47251 * 270.00175 * 3 2 1 5 5 H 1.48503 * 109.47003 * 30.00178 * 3 2 1 6 6 H 1.48503 * 109.47279 * 149.99983 * 3 2 1 7 7 C 1.38822 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99877 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00033 * 179.97438 * 9 7 2 11 11 H 1.09008 * 112.84845 * 336.19764 * 10 9 7 12 12 C 1.53775 * 113.69101 * 107.46962 * 10 9 7 13 13 C 1.53779 * 87.08438 * 139.99340 * 12 10 9 14 14 H 1.09002 * 113.61731 * 89.11293 * 13 12 10 15 15 N 1.46500 * 113.68825 * 220.00754 * 13 12 10 16 16 C 1.34778 * 119.99919 * 254.05902 * 15 13 12 17 17 O 1.21528 * 119.99897 * 0.02562 * 16 15 13 18 18 C 1.48088 * 119.99844 * 180.02562 * 16 15 13 19 19 N 1.32700 * 120.59398 * 359.72401 * 18 16 15 20 20 C 1.31720 * 121.24696 * 179.71769 * 19 18 16 21 21 N 1.31535 * 122.33066 * 0.59703 * 20 19 18 22 22 C 1.33232 * 121.07785 * 359.69187 * 21 20 19 23 23 S 1.75737 * 131.39935 * 180.02562 * 22 21 20 24 24 C 1.75352 * 92.19796 * 179.97438 * 23 22 21 25 25 C 1.32143 * 111.48285 * 359.97438 * 24 23 22 26 26 C 1.40609 * 119.07261 * 0.02562 * 22 21 20 27 27 C 1.53777 * 113.61596 * 205.00444 * 10 9 7 28 28 H 0.96992 * 119.99568 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99801 * 0.02562 * 9 7 2 30 30 H 1.08993 * 113.61636 * 25.43703 * 12 10 9 31 31 H 1.09008 * 113.61006 * 254.53946 * 12 10 9 32 32 H 0.96998 * 119.99853 * 74.06469 * 15 13 12 33 33 H 1.07993 * 118.83793 * 180.26739 * 20 19 18 34 34 H 1.08002 * 124.25821 * 180.02562 * 24 23 22 35 35 H 1.07993 * 122.56882 * 180.02562 * 25 24 23 36 36 H 1.08997 * 113.61941 * 105.38208 * 27 10 9 37 37 H 1.09009 * 113.68972 * 334.49288 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0653 -3.5637 -0.4078 12 6 2.0019 -4.4039 1.3412 13 6 1.8500 -5.6984 0.5252 14 1 2.8004 -6.1634 0.2631 15 7 0.8916 -6.6466 1.0985 16 6 1.3329 -7.7592 1.7180 17 8 2.5259 -7.9757 1.8014 18 6 0.3642 -8.7180 2.2971 19 7 -0.9408 -8.4906 2.2175 20 6 -1.8140 -9.3373 2.7232 21 7 -1.4486 -10.4400 3.3401 22 6 -0.1619 -10.7570 3.4777 23 16 0.6207 -12.1352 4.2371 24 6 2.2187 -11.5328 3.8391 25 6 2.1547 -10.3856 3.1864 26 6 0.8148 -9.8927 2.9522 27 6 1.2597 -4.8285 -0.5971 28 1 -0.4849 0.8400 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 1.1246 -4.1599 1.9403 31 1 2.9311 -4.3521 1.9089 32 1 -0.0605 -6.4736 1.0322 33 1 -2.8670 -9.1157 2.6327 34 1 3.1393 -12.0364 4.0946 35 1 3.0352 -9.8560 2.8539 36 1 1.5894 -5.1195 -1.5944 37 1 0.1791 -4.7018 -0.5289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022106732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:37 Heat of formation + Delta-G solvation = 50.960938 kcal Electronic energy + Delta-G solvation = -22775.370656 eV Core-core repulsion = 19258.614291 eV Total energy + Delta-G solvation = -3516.756366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45564 -40.91776 -39.32275 -37.33397 -35.81027 -35.13583 -34.08400 -31.85956 -31.31590 -27.37251 -26.55166 -26.32231 -25.80081 -23.94940 -22.48445 -21.98303 -21.05321 -19.84555 -19.52081 -19.05762 -17.64843 -17.13206 -17.04262 -16.81995 -16.41894 -16.09712 -15.94273 -15.63301 -15.37627 -15.10307 -14.94684 -14.46012 -13.92275 -13.69143 -13.45862 -13.31862 -13.15880 -12.82824 -12.42787 -12.31474 -12.28181 -12.22534 -12.13181 -12.03617 -11.78398 -11.54642 -11.40954 -10.86481 -10.51737 -10.28851 -10.08451 -9.29847 -8.98456 -7.94542 -5.22634 -1.10242 -0.62344 -0.05055 0.69125 1.03741 1.47556 1.48839 1.49924 1.58186 1.79414 2.53592 2.57035 2.71532 3.02310 3.23447 3.34175 3.37025 3.66041 3.81445 3.84621 3.96789 4.03872 4.26031 4.30783 4.56092 4.68496 4.86390 4.88966 4.89738 4.93601 5.02584 5.11084 5.15169 5.30787 5.40276 5.51257 5.63778 6.27732 6.31746 6.66675 6.92837 7.34381 8.10247 8.33073 9.28680 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.031011 B = 0.002310 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.676951 B =12120.737432 C =12594.519725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.724 5.724 10 C 0.152 3.848 11 H 0.084 0.916 12 C -0.170 4.170 13 C 0.134 3.866 14 H 0.119 0.881 15 N -0.680 5.680 16 C 0.567 3.433 17 O -0.544 6.544 18 C 0.173 3.827 19 N -0.499 5.499 20 C 0.304 3.696 21 N -0.484 5.484 22 C 0.059 3.941 23 S 0.208 5.792 24 C -0.169 4.169 25 C -0.120 4.120 26 C -0.147 4.147 27 C -0.141 4.141 28 H 0.251 0.749 29 H 0.375 0.625 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.418 0.582 33 H 0.247 0.753 34 H 0.218 0.782 35 H 0.164 0.836 36 H 0.087 0.913 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.653 -27.823 6.994 28.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.361 5.361 10 C 0.041 3.959 11 H 0.102 0.898 12 C -0.212 4.212 13 C 0.029 3.971 14 H 0.137 0.863 15 N -0.329 5.329 16 C 0.351 3.649 17 O -0.421 6.421 18 C 0.016 3.984 19 N -0.216 5.216 20 C 0.013 3.987 21 N -0.200 5.200 22 C -0.195 4.195 23 S 0.467 5.533 24 C -0.303 4.303 25 C -0.149 4.149 26 C -0.163 4.163 27 C -0.180 4.180 28 H 0.060 0.940 29 H 0.207 0.793 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.255 0.745 33 H 0.262 0.738 34 H 0.235 0.765 35 H 0.181 0.819 36 H 0.106 0.894 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.208 -28.928 7.722 29.941 hybrid contribution 0.578 2.444 -0.615 2.586 sum 0.786 -26.483 7.107 27.432 Atomic orbital electron populations 1.69804 1.06561 1.26049 1.59556 1.25555 0.96377 1.01078 1.03813 0.85171 0.77710 0.79646 0.77431 1.21340 1.22414 1.19520 1.19711 0.91610 0.85320 1.40905 0.90417 1.42517 1.05403 1.00834 1.87369 1.21663 0.95905 0.84021 0.94279 0.89776 1.24177 1.01379 0.96029 0.99634 1.22373 0.93575 0.86612 0.94525 0.86308 1.45844 1.11726 1.20600 1.54778 1.17841 0.86957 0.81395 0.78685 1.90729 1.16076 1.76133 1.59195 1.21595 0.91233 0.92098 0.93454 1.68227 1.01357 1.32625 1.19422 1.25711 1.01531 0.83643 0.87820 1.68001 1.15848 1.19939 1.16225 1.24606 0.93065 1.00958 1.00865 1.84242 0.95150 1.17297 1.56655 1.25976 1.02761 0.99220 1.02373 1.21044 0.95637 0.97087 1.01141 1.20871 0.96268 0.96830 1.02305 1.23688 1.01019 0.94894 0.98405 0.94040 0.79261 0.91399 0.92199 0.74460 0.73765 0.76487 0.81894 0.89433 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.70 13.06 21.65 0.28 -58.41 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.24 -13.29 9.97 84.04 0.84 -12.45 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.72 -35.42 5.40 -320.46 -1.73 -37.16 16 10 C 0.15 5.67 4.48 45.52 0.20 5.87 16 11 H 0.08 3.08 8.10 -2.38 -0.02 3.06 16 12 C -0.17 -5.75 7.68 31.12 0.24 -5.52 16 13 C 0.13 3.73 4.22 45.52 0.19 3.92 16 14 H 0.12 3.25 7.50 -2.39 -0.02 3.23 16 15 N -0.68 -17.63 5.36 -442.67 -2.37 -20.00 16 16 C 0.57 15.65 7.82 86.86 0.68 16.33 16 17 O -0.54 -16.88 14.20 -3.80 -0.05 -16.93 16 18 C 0.17 4.34 6.85 42.52 0.29 4.63 16 19 N -0.50 -11.15 9.65 -188.06 -1.82 -12.97 16 20 C 0.30 5.63 12.25 180.98 2.22 7.84 16 21 N -0.48 -10.18 10.45 -195.91 -2.05 -12.23 16 22 C 0.06 1.25 7.70 85.06 0.66 1.90 16 23 S 0.21 2.85 23.23 -56.49 -1.31 1.54 16 24 C -0.17 -2.07 11.03 66.83 0.74 -1.34 16 25 C -0.12 -2.29 9.63 22.93 0.22 -2.07 16 26 C -0.15 -3.42 6.02 -20.16 -0.12 -3.54 16 27 C -0.14 -4.12 7.58 31.12 0.24 -3.88 16 28 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.38 19.65 7.93 -92.70 -0.73 18.91 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.42 9.92 8.09 -92.71 -0.75 9.17 16 33 H 0.25 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.22 0.94 8.06 -2.91 -0.02 0.91 16 35 H 0.16 3.39 6.48 -2.91 -0.02 3.37 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.09 2.53 8.09 -2.38 -0.02 2.51 16 Total: -1.00 -69.07 335.81 -0.51 -69.57 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: -0.34 Total: 30.92 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 6.85 Total: 7.86 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -7.68 Total: -140.76 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.05 Total: -16.93 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.31 Total: 1.54 kcal Total: -69.07 -0.51 -69.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022106732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.531 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds