Wall clock time and date at job start Tue Mar 31 2020 12:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09007 * 112.85520 * 23.80746 * 10 9 7 12 12 C 1.53785 * 113.61216 * 154.99972 * 10 9 7 13 13 C 1.53784 * 87.08114 * 139.98211 * 12 10 9 14 14 H 1.08999 * 113.61315 * 89.20208 * 13 12 10 15 15 N 1.46495 * 113.61463 * 220.02150 * 13 12 10 16 16 C 1.34779 * 120.00274 * 205.00198 * 15 13 12 17 17 O 1.21625 * 119.99291 * 359.97438 * 16 15 13 18 18 C 1.47304 * 120.00375 * 179.97438 * 16 15 13 19 19 C 1.38370 * 120.57121 * 359.72083 * 18 16 15 20 20 C 1.38867 * 121.15493 * 179.82280 * 19 18 16 21 21 C 1.35576 * 122.42852 * 0.42141 * 20 19 18 22 22 C 1.41628 * 120.90806 * 359.82783 * 21 20 19 23 23 N 1.32402 * 131.03829 * 179.97438 * 22 21 20 24 24 S 1.55554 * 109.37689 * 179.97438 * 23 22 21 25 25 N 1.55560 * 100.17413 * 359.97438 * 24 23 22 26 26 C 1.31860 * 109.44881 * 359.97438 * 25 24 23 27 27 C 1.53779 * 87.08043 * 334.56708 * 13 12 10 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 30 30 H 1.08999 * 113.61550 * 254.53185 * 12 10 9 31 31 H 1.09001 * 113.61491 * 25.35037 * 12 10 9 32 32 H 0.96995 * 120.00312 * 24.99741 * 15 13 12 33 33 H 1.07998 * 119.42258 * 0.02562 * 19 18 16 34 34 H 1.07997 * 118.78477 * 180.22300 * 20 19 18 35 35 H 1.08005 * 119.54729 * 179.80321 * 21 20 19 36 36 H 1.08995 * 113.61453 * 270.88459 * 27 13 12 37 37 H 1.09003 * 113.61291 * 139.98180 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0658 -3.5638 0.4060 12 6 1.2603 -4.8287 0.5961 13 6 1.8482 -5.6976 -0.5284 14 1 2.7980 -6.1645 -0.2681 15 7 0.8878 -6.6432 -1.1025 16 6 1.3254 -7.7707 -1.6972 17 8 2.5178 -8.0027 -1.7578 18 6 0.3597 -8.7218 -2.2739 19 6 -0.9997 -8.4724 -2.2066 20 6 -1.9205 -9.3588 -2.7494 21 6 -1.5481 -10.5097 -3.3617 22 6 -0.1813 -10.8618 -3.4794 23 7 0.4003 -11.9175 -4.0272 24 16 1.9434 -11.7939 -3.8744 25 7 2.0372 -10.4347 -3.1236 26 6 0.8240 -9.9563 -2.9285 27 6 1.9992 -4.4021 -1.3432 28 1 -0.4850 0.8401 0.0004 29 1 0.3557 -2.3880 0.0005 30 1 1.5918 -5.1211 1.5924 31 1 0.1800 -4.6996 0.5304 32 1 -0.0631 -6.4579 -1.0545 33 1 -1.3505 -7.5709 -1.7264 34 1 -2.9723 -9.1243 -2.6784 35 1 -2.3041 -11.1672 -3.7649 36 1 1.1210 -4.1570 -1.9403 37 1 2.9273 -4.3501 -1.9125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022919400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:35 Heat of formation + Delta-G solvation = 83.975715 kcal Electronic energy + Delta-G solvation = -22769.242341 eV Core-core repulsion = 19253.917603 eV Total energy + Delta-G solvation = -3515.324738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19756 -39.70675 -37.90018 -36.65058 -34.09392 -34.02621 -32.78547 -30.73031 -29.68984 -27.90420 -25.13212 -24.90762 -23.64501 -22.83453 -21.75602 -20.44894 -19.88104 -19.19466 -18.04128 -17.30553 -16.89769 -16.54626 -16.11728 -15.78595 -15.25324 -14.79640 -14.56250 -14.43943 -13.98468 -13.16125 -13.05961 -12.89344 -12.53984 -12.33113 -12.10780 -12.09434 -11.92704 -11.72972 -11.31092 -11.23098 -11.03817 -10.93389 -10.63653 -10.50478 -10.33517 -10.06132 -9.77690 -9.59735 -9.13037 -8.93431 -8.87930 -8.66275 -6.99878 -5.81703 -3.10402 -0.61128 0.98993 1.11282 1.16263 1.43520 2.66584 3.07703 3.41746 3.44027 3.47563 3.48932 3.82753 4.33661 4.40572 4.50478 4.57485 4.66004 4.83700 5.03219 5.22213 5.32188 5.38144 5.42713 5.46532 5.70768 5.82782 5.84771 5.86381 5.94042 6.11483 6.24210 6.30034 6.43174 6.50207 6.61541 6.73074 7.05555 7.58860 7.67977 8.27208 8.37025 9.48464 10.04843 10.39430 11.40722 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.029621 B = 0.002332 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.041949 B =12006.074084 C =12544.588019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.080 0.920 12 C -0.158 4.158 13 C 0.119 3.881 14 H 0.110 0.890 15 N -0.709 5.709 16 C 0.552 3.448 17 O -0.515 6.515 18 C -0.072 4.072 19 C -0.054 4.054 20 C -0.102 4.102 21 C -0.043 4.043 22 C 0.073 3.927 23 N -0.595 5.595 24 S 0.786 5.214 25 N -0.555 5.555 26 C 0.109 3.891 27 C -0.176 4.176 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.398 0.602 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.410 -25.092 -6.251 26.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.098 0.902 12 C -0.198 4.198 13 C 0.015 3.985 14 H 0.128 0.872 15 N -0.360 5.360 16 C 0.337 3.663 17 O -0.391 6.391 18 C -0.082 4.082 19 C -0.079 4.079 20 C -0.126 4.126 21 C -0.068 4.068 22 C -0.088 4.088 23 N -0.445 5.445 24 S 0.834 5.166 25 N -0.403 5.403 26 C -0.053 4.053 27 C -0.218 4.218 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.233 0.767 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.099 0.901 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.686 -26.515 -6.979 27.469 hybrid contribution -1.725 2.093 0.434 2.747 sum -3.412 -24.422 -6.544 25.512 Atomic orbital electron populations 1.69656 1.05139 1.25776 1.57573 1.24760 0.95542 0.97804 1.02771 0.86180 0.78717 0.83706 0.77547 1.21657 1.20688 1.21762 1.19318 0.91165 0.84145 1.42837 0.90984 1.42351 1.05675 0.99762 1.86996 1.21350 0.95511 0.84916 0.92625 0.90189 1.23874 1.01225 0.97264 0.97469 1.22528 0.93199 0.87271 0.95506 0.87162 1.45958 1.10538 1.21126 1.58373 1.17857 0.88141 0.81316 0.78947 1.90849 1.15958 1.75421 1.56842 1.20394 0.93402 0.92571 1.01872 1.21418 0.91017 0.99318 0.96114 1.20604 1.00792 0.93474 0.97756 1.20330 0.90897 0.97171 0.98353 1.21261 0.97313 0.90013 1.00190 1.72232 1.15776 1.28643 1.27882 1.78757 0.98827 1.08518 1.30532 1.72202 1.28409 1.16867 1.22790 1.21975 0.85735 0.97036 1.00597 1.24345 1.01935 0.95020 1.00538 0.93455 0.78091 0.91420 0.89906 0.76704 0.83674 0.83650 0.83963 0.90141 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.21 5.40 -52.64 -0.28 -17.50 16 10 C 0.17 3.23 4.48 -67.12 -0.30 2.93 16 11 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 12 C -0.16 -2.41 7.58 -25.92 -0.20 -2.61 16 13 C 0.12 1.78 4.24 -67.12 -0.28 1.49 16 14 H 0.11 1.75 7.46 -51.93 -0.39 1.36 16 15 N -0.71 -9.05 5.31 -54.13 -0.29 -9.33 16 16 C 0.55 8.10 7.77 -12.57 -0.10 8.00 16 17 O -0.51 -9.68 15.69 5.26 0.08 -9.60 16 18 C -0.07 -0.86 6.07 -102.50 -0.62 -1.48 16 19 C -0.05 -0.42 9.49 -39.30 -0.37 -0.79 16 20 C -0.10 -0.62 9.82 -40.30 -0.40 -1.01 16 21 C -0.04 -0.32 10.02 -39.24 -0.39 -0.72 16 22 C 0.07 0.79 7.17 -83.18 -0.60 0.19 16 23 N -0.59 -6.36 11.45 25.61 0.29 -6.07 16 24 S 0.79 7.32 23.60 -107.50 -2.54 4.79 16 25 N -0.55 -7.59 10.68 26.57 0.28 -7.31 16 26 C 0.11 1.42 7.06 -81.05 -0.57 0.85 16 27 C -0.18 -3.05 7.68 -25.92 -0.20 -3.25 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.39 9.78 7.92 -40.82 -0.32 9.46 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.40 3.87 6.76 -40.82 -0.28 3.59 16 33 H 0.15 0.74 6.37 -52.49 -0.33 0.41 16 34 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 35 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -35.56 334.28 -9.81 -45.37 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -3.82 Total: 8.03 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -4.28 Total: -3.65 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: 0.73 Total: -67.08 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 7.32 SS G_CDS: -2.54 Total: 4.79 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.56 -9.81 -45.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022919400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.344 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds