Wall clock time and date at job start Tue Mar 31 2020 12:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09007 * 112.85520 * 23.80746 * 10 9 7 12 12 C 1.53785 * 113.61216 * 154.99972 * 10 9 7 13 13 C 1.53784 * 87.08114 * 139.98211 * 12 10 9 14 14 H 1.08999 * 113.61315 * 89.20208 * 13 12 10 15 15 N 1.46495 * 113.61463 * 220.02150 * 13 12 10 16 16 C 1.34779 * 120.00274 * 205.00198 * 15 13 12 17 17 O 1.21625 * 119.99291 * 359.97438 * 16 15 13 18 18 C 1.47304 * 120.00375 * 179.97438 * 16 15 13 19 19 C 1.38370 * 120.57121 * 359.72083 * 18 16 15 20 20 C 1.38867 * 121.15493 * 179.82280 * 19 18 16 21 21 C 1.35576 * 122.42852 * 0.42141 * 20 19 18 22 22 C 1.41628 * 120.90806 * 359.82783 * 21 20 19 23 23 N 1.32402 * 131.03829 * 179.97438 * 22 21 20 24 24 S 1.55554 * 109.37689 * 179.97438 * 23 22 21 25 25 N 1.55560 * 100.17413 * 359.97438 * 24 23 22 26 26 C 1.31860 * 109.44881 * 359.97438 * 25 24 23 27 27 C 1.53779 * 87.08043 * 334.56708 * 13 12 10 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 30 30 H 1.08999 * 113.61550 * 254.53185 * 12 10 9 31 31 H 1.09001 * 113.61491 * 25.35037 * 12 10 9 32 32 H 0.96995 * 120.00312 * 24.99741 * 15 13 12 33 33 H 1.07998 * 119.42258 * 0.02562 * 19 18 16 34 34 H 1.07997 * 118.78477 * 180.22300 * 20 19 18 35 35 H 1.08005 * 119.54729 * 179.80321 * 21 20 19 36 36 H 1.08995 * 113.61453 * 270.88459 * 27 13 12 37 37 H 1.09003 * 113.61291 * 139.98180 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0658 -3.5638 0.4060 12 6 1.2603 -4.8287 0.5961 13 6 1.8482 -5.6976 -0.5284 14 1 2.7980 -6.1645 -0.2681 15 7 0.8878 -6.6432 -1.1025 16 6 1.3254 -7.7707 -1.6972 17 8 2.5178 -8.0027 -1.7578 18 6 0.3597 -8.7218 -2.2739 19 6 -0.9997 -8.4724 -2.2066 20 6 -1.9205 -9.3588 -2.7494 21 6 -1.5481 -10.5097 -3.3617 22 6 -0.1813 -10.8618 -3.4794 23 7 0.4003 -11.9175 -4.0272 24 16 1.9434 -11.7939 -3.8744 25 7 2.0372 -10.4347 -3.1236 26 6 0.8240 -9.9563 -2.9285 27 6 1.9992 -4.4021 -1.3432 28 1 -0.4850 0.8401 0.0004 29 1 0.3557 -2.3880 0.0005 30 1 1.5918 -5.1211 1.5924 31 1 0.1800 -4.6996 0.5304 32 1 -0.0631 -6.4579 -1.0545 33 1 -1.3505 -7.5709 -1.7264 34 1 -2.9723 -9.1243 -2.6784 35 1 -2.3041 -11.1672 -3.7649 36 1 1.1210 -4.1570 -1.9403 37 1 2.9273 -4.3501 -1.9125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022919400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:34 Heat of formation + Delta-G solvation = 57.585050 kcal Electronic energy + Delta-G solvation = -22770.386726 eV Core-core repulsion = 19253.917603 eV Total energy + Delta-G solvation = -3516.469123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.98259 -40.87139 -39.22374 -37.35580 -35.75880 -34.83668 -34.25876 -32.03968 -31.06520 -28.60564 -26.58353 -26.44483 -24.99762 -23.60749 -23.00062 -21.49330 -20.89409 -20.35905 -19.16662 -18.80725 -17.95977 -17.55538 -16.93372 -16.92174 -16.25261 -16.15636 -15.80403 -15.71287 -15.34157 -14.92851 -14.42786 -13.75532 -13.64457 -13.28013 -13.19516 -13.09372 -12.87921 -12.82763 -12.81211 -12.59082 -12.23401 -12.17667 -12.05324 -12.03345 -11.85216 -11.72003 -11.49842 -10.89783 -10.81306 -10.04553 -9.82049 -9.46998 -8.96458 -7.94082 -5.21501 -1.32402 0.26820 0.38111 0.38591 0.71171 1.49335 1.49769 1.58248 1.81840 2.06626 2.58025 2.60417 3.04177 3.37679 3.61657 3.67712 3.79558 3.87155 3.92133 3.96691 3.98644 4.20976 4.29132 4.33557 4.62298 4.78942 4.79697 4.91123 4.93366 5.13841 5.15839 5.17421 5.23033 5.29863 5.37481 5.52470 5.68528 5.78131 6.28952 6.57479 7.23615 7.35834 8.11225 8.35369 9.28910 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.029621 B = 0.002332 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.041949 B =12006.074084 C =12544.588019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.273 1.273 6 H -0.295 1.295 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.722 5.722 10 C 0.150 3.850 11 H 0.076 0.924 12 C -0.136 4.136 13 C 0.137 3.863 14 H 0.101 0.899 15 N -0.696 5.696 16 C 0.552 3.448 17 O -0.568 6.568 18 C -0.121 4.121 19 C -0.018 4.018 20 C -0.093 4.093 21 C -0.037 4.037 22 C 0.058 3.942 23 N -0.606 5.606 24 S 0.835 5.165 25 N -0.613 5.613 26 C 0.087 3.913 27 C -0.170 4.170 28 H 0.251 0.749 29 H 0.377 0.623 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.414 0.586 33 H 0.176 0.824 34 H 0.193 0.807 35 H 0.170 0.830 36 H 0.076 0.924 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 -26.076 -6.320 27.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.198 1.198 6 H -0.222 1.222 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.360 5.360 10 C 0.039 3.961 11 H 0.094 0.906 12 C -0.176 4.176 13 C 0.031 3.969 14 H 0.119 0.881 15 N -0.348 5.348 16 C 0.340 3.660 17 O -0.448 6.448 18 C -0.132 4.132 19 C -0.042 4.042 20 C -0.117 4.117 21 C -0.062 4.062 22 C -0.102 4.102 23 N -0.458 5.458 24 S 0.883 5.117 25 N -0.462 5.462 26 C -0.075 4.075 27 C -0.212 4.212 28 H 0.060 0.940 29 H 0.210 0.790 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.253 0.747 33 H 0.193 0.807 34 H 0.210 0.790 35 H 0.188 0.812 36 H 0.094 0.906 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.795 -27.536 -7.045 28.675 hybrid contribution -1.101 2.260 0.401 2.545 sum -4.896 -25.276 -6.644 26.590 Atomic orbital electron populations 1.69787 1.06374 1.26053 1.59480 1.25494 0.96394 1.00853 1.03770 0.85210 0.77688 0.79866 0.77423 1.21363 1.19847 1.22195 1.19672 0.91491 0.85468 1.41035 0.90858 1.42469 1.05427 1.00627 1.87428 1.21644 0.95741 0.84264 0.94413 0.90610 1.23668 1.01360 0.94457 0.98075 1.22136 0.93509 0.86720 0.94519 0.88093 1.45733 1.11053 1.20266 1.57776 1.18315 0.88033 0.81587 0.78059 1.90813 1.18320 1.76637 1.59032 1.20250 0.94445 0.92895 1.05569 1.21904 0.89371 0.99865 0.93087 1.21102 1.02568 0.92065 0.95980 1.20841 0.89825 0.97989 0.97528 1.21652 0.98376 0.89705 1.00480 1.72197 1.16569 1.28878 1.28129 1.78358 0.97909 1.06511 1.28917 1.72036 1.29921 1.19217 1.25067 1.22362 0.86057 0.97920 1.01117 1.24188 1.01220 0.96296 0.99535 0.93969 0.78990 0.89912 0.88651 0.74688 0.80685 0.78990 0.81219 0.90573 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.53 13.06 21.65 0.28 -57.25 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 7 C -0.24 -13.37 9.97 84.03 0.84 -12.53 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.72 -34.95 5.40 -320.44 -1.73 -36.68 16 10 C 0.15 5.68 4.48 45.52 0.20 5.88 16 11 H 0.08 2.91 8.10 -2.38 -0.02 2.89 16 12 C -0.14 -3.91 7.58 31.12 0.24 -3.67 16 13 C 0.14 3.96 4.24 45.52 0.19 4.15 16 14 H 0.10 3.20 7.46 -2.39 -0.02 3.19 16 15 N -0.70 -16.83 5.31 -443.41 -2.35 -19.18 16 16 C 0.55 16.16 7.77 86.63 0.67 16.84 16 17 O -0.57 -22.22 15.69 -4.11 -0.06 -22.28 16 18 C -0.12 -2.79 6.07 -18.49 -0.11 -2.91 16 19 C -0.02 -0.21 9.49 22.45 0.21 0.00 16 20 C -0.09 -0.68 9.82 21.80 0.21 -0.47 16 21 C -0.04 -0.43 10.02 22.49 0.23 -0.21 16 22 C 0.06 1.17 7.17 41.93 0.30 1.47 16 23 N -0.61 -12.43 11.45 -72.87 -0.83 -13.26 16 24 S 0.84 15.72 23.60 -56.49 -1.33 14.39 16 25 N -0.61 -17.42 10.68 -69.86 -0.75 -18.17 16 26 C 0.09 2.26 7.06 43.54 0.31 2.57 16 27 C -0.17 -5.88 7.68 31.12 0.24 -5.64 16 28 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.38 19.17 7.92 -92.71 -0.73 18.44 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.10 2.55 8.10 -2.39 -0.02 2.53 16 32 H 0.41 6.91 6.76 -92.71 -0.63 6.28 16 33 H 0.18 0.94 6.37 -2.91 -0.02 0.92 16 34 H 0.19 -0.29 8.06 -2.91 -0.02 -0.31 16 35 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -80.28 334.28 -0.97 -81.25 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -0.21 Total: 21.65 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 4.00 Total: 1.84 kcal Atomic # 7 Polarization: -139.16 SS G_CDS: -5.38 Total: -144.54 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.06 Total: -22.28 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: 15.72 SS G_CDS: -1.33 Total: 14.39 kcal Total: -80.28 -0.97 -81.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022919400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.837 kcal (2) G-P(sol) polarization free energy of solvation -80.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds