Wall clock time and date at job start Tue Mar 31 2020 12:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99826 * 2 1 4 4 H 1.48503 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47330 * 299.99992 * 3 2 1 6 6 H 1.48507 * 109.47399 * 60.00073 * 3 2 1 7 7 C 1.38811 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00055 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00389 * 0.02562 * 7 2 1 10 10 C 1.47870 * 126.94060 * 0.02562 * 9 7 2 11 11 C 1.55484 * 105.16936 * 181.92362 * 10 9 7 12 12 H 1.09004 * 116.03534 * 159.75318 * 11 10 9 13 13 C 1.57428 * 99.68696 * 32.85587 * 11 10 9 14 14 C 1.49283 * 126.94866 * 179.97438 * 9 7 2 15 15 H 1.09000 * 116.14953 * 15.84304 * 14 9 7 16 16 C 1.56018 * 104.09361 * 246.70010 * 14 9 7 17 17 N 1.47876 * 105.10419 * 288.76610 * 16 14 9 18 18 C 1.34776 * 126.94241 * 181.98389 * 17 16 14 19 19 O 1.21757 * 119.99346 * 184.61168 * 18 17 16 20 20 C 1.46259 * 120.00152 * 4.60553 * 18 17 16 21 21 C 1.33474 * 122.21121 * 353.43027 * 20 18 17 22 22 S 1.75727 * 109.85752 * 179.63557 * 21 20 18 23 23 C 1.75943 * 91.05509 * 0.34697 * 22 21 20 24 24 C 1.36289 * 142.80500 * 179.53507 * 23 22 21 25 25 N 1.33740 * 107.81694 * 179.97438 * 24 23 22 26 26 C 1.30350 * 109.46430 * 359.97438 * 25 24 23 27 27 N 1.35926 * 109.81803 * 359.72980 * 23 22 21 28 28 H 0.96994 * 120.00068 * 359.97438 * 1 2 3 29 29 H 1.09007 * 110.31589 * 300.90778 * 10 9 7 30 30 H 1.09002 * 110.31612 * 62.99041 * 10 9 7 31 31 H 1.08996 * 112.53382 * 191.70867 * 13 11 10 32 32 H 1.09002 * 112.31743 * 64.17361 * 13 11 10 33 33 H 1.09004 * 110.31675 * 169.86385 * 16 14 9 34 34 H 1.08997 * 110.31646 * 47.67359 * 16 14 9 35 35 H 1.07998 * 125.06813 * 359.97438 * 21 20 18 36 36 H 1.08001 * 126.09355 * 359.97438 * 24 23 22 37 37 H 1.08007 * 125.57358 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1421 -2.5669 -0.0005 11 6 -0.3647 -4.1049 0.0504 12 1 -1.3442 -4.4354 0.3959 13 6 0.8835 -4.5248 0.9130 14 6 1.9104 -3.7617 0.0005 15 1 2.9646 -3.8350 0.2677 16 6 1.5084 -4.3456 -1.3893 17 7 0.0516 -4.5835 -1.3006 18 6 -0.7410 -5.1190 -2.2500 19 8 -1.9443 -5.1810 -2.0746 20 6 -0.1558 -5.6254 -3.4911 21 6 1.1361 -5.4648 -3.7859 22 16 1.4898 -6.2037 -5.3406 23 6 -0.1882 -6.7002 -5.5231 24 6 -1.0446 -7.3430 -6.3662 25 7 -2.2561 -7.3396 -5.7996 26 6 -2.1960 -6.7291 -4.6495 27 7 -0.9064 -6.3044 -4.4391 28 1 -0.4850 0.8400 0.0004 29 1 -0.5820 -2.0910 0.8760 30 1 -0.5733 -2.1523 -0.9118 31 1 1.0486 -5.6021 0.9119 32 1 0.8439 -4.1182 1.9236 33 1 2.0343 -5.2827 -1.5725 34 1 1.7271 -3.6272 -2.1792 35 1 1.8575 -4.9611 -3.1597 36 1 -0.7903 -7.7777 -7.3215 37 1 -3.0255 -6.5776 -3.9745 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032660723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:41 Heat of formation + Delta-G solvation = 145.757510 kcal Electronic energy + Delta-G solvation = -24471.643472 eV Core-core repulsion = 20958.997794 eV Total energy + Delta-G solvation = -3512.645678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.76646 -40.48845 -38.25046 -36.25164 -33.96585 -32.11556 -30.51234 -29.59286 -29.02541 -28.75700 -25.85136 -24.98773 -23.46557 -22.63730 -21.41668 -20.60074 -20.01393 -19.15474 -18.24855 -17.40464 -16.55824 -16.31152 -16.02671 -15.45760 -14.97613 -14.69885 -14.48846 -14.20856 -13.96424 -13.60530 -13.55126 -13.39620 -12.29994 -12.17051 -12.07227 -11.86757 -11.64986 -11.49113 -11.21897 -11.03333 -10.90390 -10.80082 -10.50614 -10.37266 -10.32606 -10.18389 -10.00056 -9.79320 -9.49851 -8.85899 -8.38790 -7.55703 -7.09920 -5.90853 -3.26685 0.48448 0.96789 1.40025 1.71760 2.23853 2.84973 3.13141 3.18966 3.28861 3.33900 3.37518 4.27219 4.29655 4.56270 4.62170 4.78759 4.88789 4.98729 5.11460 5.14853 5.34166 5.37309 5.38423 5.55372 5.60124 5.77215 5.83971 6.00964 6.16705 6.18777 6.25342 6.36966 6.42912 6.89828 7.25541 7.29211 7.56696 7.64354 7.70985 7.94272 8.09204 8.95192 9.56534 10.22896 11.21264 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.003843 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.541761 B = 7283.291748 C = 7607.032470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.002 4.002 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.238 4.238 8 H 0.083 0.917 9 N -0.596 5.596 10 C 0.171 3.829 11 C 0.103 3.897 12 H 0.119 0.881 13 C -0.150 4.150 14 C 0.143 3.857 15 H 0.112 0.888 16 C 0.063 3.937 17 N -0.588 5.588 18 C 0.588 3.412 19 O -0.540 6.540 20 C 0.045 3.955 21 C -0.186 4.186 22 S 0.157 5.843 23 C -0.104 4.104 24 C 0.018 3.982 25 N -0.460 5.460 26 C 0.218 3.782 27 N -0.385 5.385 28 H 0.255 0.745 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.218 0.782 36 H 0.181 0.819 37 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -13.300 -5.629 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.365 4.365 8 H 0.101 0.899 9 N -0.320 5.320 10 C 0.046 3.954 11 C 0.002 3.998 12 H 0.137 0.863 13 C -0.189 4.189 14 C 0.034 3.966 15 H 0.130 0.870 16 C -0.062 4.062 17 N -0.320 5.320 18 C 0.373 3.627 19 O -0.419 6.419 20 C -0.069 4.069 21 C -0.325 4.325 22 S 0.417 5.583 23 C -0.328 4.328 24 C -0.140 4.140 25 N -0.174 5.174 26 C -0.065 4.065 27 N -0.064 5.064 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.234 0.766 36 H 0.198 0.802 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.368 -13.488 -6.647 15.659 hybrid contribution -0.124 1.519 0.945 1.793 sum 4.244 -11.969 -5.702 13.921 Atomic orbital electron populations 1.69907 1.05019 1.25488 1.55919 1.24837 0.95686 0.97857 1.01593 0.86039 0.78701 0.83549 0.77361 1.20368 1.21699 1.21603 1.19086 0.90474 0.81898 1.45085 0.89917 1.45279 1.01259 0.99293 1.86158 1.21887 0.84859 0.86892 1.01809 1.24452 0.98265 0.97883 0.79219 0.86319 1.24250 0.96151 0.99139 0.99402 1.23220 0.96943 0.86387 0.90073 0.86981 1.23842 0.79952 0.99059 1.03331 1.48925 1.09398 1.58283 1.15407 1.16423 0.85866 0.78990 0.81380 1.90838 1.13397 1.58647 1.79059 1.18800 0.90751 1.03460 0.93901 1.27079 0.98564 1.05041 1.01858 1.84433 0.99875 1.58017 1.15997 1.24528 0.98122 1.13921 0.96245 1.21765 0.86825 1.04812 1.00578 1.70224 1.22605 1.18495 1.06109 1.25569 0.84818 0.99490 0.96587 1.43829 1.09956 1.38921 1.13655 0.93444 0.92062 0.93218 0.91332 0.89221 0.91677 0.89973 0.76625 0.80166 0.76455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.56 10.56 55.49 0.59 -24.97 16 2 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 3 Si 0.91 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -5.89 10.37 -15.06 -0.16 -6.05 16 8 H 0.08 1.95 7.83 -52.48 -0.41 1.53 16 9 N -0.60 -13.06 3.02 -156.64 -0.47 -13.53 16 10 C 0.17 3.78 4.75 -1.97 -0.01 3.77 16 11 C 0.10 1.80 5.22 -62.67 -0.33 1.47 16 12 H 0.12 2.00 8.07 -51.93 -0.42 1.58 16 13 C -0.15 -2.20 6.83 -22.07 -0.15 -2.35 16 14 C 0.14 2.29 5.53 -62.52 -0.35 1.95 16 15 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 16 C 0.06 0.91 4.28 -1.67 -0.01 0.90 16 17 N -0.59 -9.78 2.95 -158.58 -0.47 -10.25 16 18 C 0.59 10.34 7.84 -13.04 -0.10 10.24 16 19 O -0.54 -10.83 16.38 5.14 0.08 -10.75 16 20 C 0.04 0.69 6.70 -83.21 -0.56 0.13 16 21 C -0.19 -2.32 9.68 29.07 0.28 -2.04 16 22 S 0.16 1.72 23.33 -107.50 -2.51 -0.79 16 23 C -0.10 -1.42 7.81 -16.44 -0.13 -1.55 16 24 C 0.02 0.24 11.93 -17.42 -0.21 0.03 16 25 N -0.46 -6.92 11.21 -13.83 -0.16 -7.08 16 26 C 0.22 3.33 12.38 -88.30 -1.09 2.24 16 27 N -0.39 -5.97 3.20 -60.40 -0.19 -6.16 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.06 1.51 7.46 -51.93 -0.39 1.12 16 30 H 0.05 1.29 7.67 -51.93 -0.40 0.90 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.07 0.71 6.77 -51.93 -0.35 0.36 16 34 H 0.08 1.28 7.08 -51.93 -0.37 0.91 16 35 H 0.22 2.35 3.57 -52.49 -0.19 2.16 16 36 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.22 3.05 7.69 -52.48 -0.40 2.64 16 LS Contribution 317.27 15.07 4.78 4.78 Total: -1.00 -31.04 317.27 -10.02 -41.06 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.75 Total: 3.39 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -2.90 Total: 8.57 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.70 Total: -62.00 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.51 Total: -0.79 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.04 -10.02 -41.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032660723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.815 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds