Wall clock time and date at job start Tue Mar 31 2020 12:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99826 * 2 1 4 4 H 1.48503 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47330 * 299.99992 * 3 2 1 6 6 H 1.48507 * 109.47399 * 60.00073 * 3 2 1 7 7 C 1.38811 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00055 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00389 * 0.02562 * 7 2 1 10 10 C 1.47870 * 126.94060 * 0.02562 * 9 7 2 11 11 C 1.55484 * 105.16936 * 181.92362 * 10 9 7 12 12 H 1.09004 * 116.03534 * 159.75318 * 11 10 9 13 13 C 1.57428 * 99.68696 * 32.85587 * 11 10 9 14 14 C 1.49283 * 126.94866 * 179.97438 * 9 7 2 15 15 H 1.09000 * 116.14953 * 15.84304 * 14 9 7 16 16 C 1.56018 * 104.09361 * 246.70010 * 14 9 7 17 17 N 1.47876 * 105.10419 * 288.76610 * 16 14 9 18 18 C 1.34776 * 126.94241 * 181.98389 * 17 16 14 19 19 O 1.21757 * 119.99346 * 184.61168 * 18 17 16 20 20 C 1.46259 * 120.00152 * 4.60553 * 18 17 16 21 21 C 1.33474 * 122.21121 * 353.43027 * 20 18 17 22 22 S 1.75727 * 109.85752 * 179.63557 * 21 20 18 23 23 C 1.75943 * 91.05509 * 0.34697 * 22 21 20 24 24 C 1.36289 * 142.80500 * 179.53507 * 23 22 21 25 25 N 1.33740 * 107.81694 * 179.97438 * 24 23 22 26 26 C 1.30350 * 109.46430 * 359.97438 * 25 24 23 27 27 N 1.35926 * 109.81803 * 359.72980 * 23 22 21 28 28 H 0.96994 * 120.00068 * 359.97438 * 1 2 3 29 29 H 1.09007 * 110.31589 * 300.90778 * 10 9 7 30 30 H 1.09002 * 110.31612 * 62.99041 * 10 9 7 31 31 H 1.08996 * 112.53382 * 191.70867 * 13 11 10 32 32 H 1.09002 * 112.31743 * 64.17361 * 13 11 10 33 33 H 1.09004 * 110.31675 * 169.86385 * 16 14 9 34 34 H 1.08997 * 110.31646 * 47.67359 * 16 14 9 35 35 H 1.07998 * 125.06813 * 359.97438 * 21 20 18 36 36 H 1.08001 * 126.09355 * 359.97438 * 24 23 22 37 37 H 1.08007 * 125.57358 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1421 -2.5669 -0.0005 11 6 -0.3647 -4.1049 0.0504 12 1 -1.3442 -4.4354 0.3959 13 6 0.8835 -4.5248 0.9130 14 6 1.9104 -3.7617 0.0005 15 1 2.9646 -3.8350 0.2677 16 6 1.5084 -4.3456 -1.3893 17 7 0.0516 -4.5835 -1.3006 18 6 -0.7410 -5.1190 -2.2500 19 8 -1.9443 -5.1810 -2.0746 20 6 -0.1558 -5.6254 -3.4911 21 6 1.1361 -5.4648 -3.7859 22 16 1.4898 -6.2037 -5.3406 23 6 -0.1882 -6.7002 -5.5231 24 6 -1.0446 -7.3430 -6.3662 25 7 -2.2561 -7.3396 -5.7996 26 6 -2.1960 -6.7291 -4.6495 27 7 -0.9064 -6.3044 -4.4391 28 1 -0.4850 0.8400 0.0004 29 1 -0.5820 -2.0910 0.8760 30 1 -0.5733 -2.1523 -0.9118 31 1 1.0486 -5.6021 0.9119 32 1 0.8439 -4.1182 1.9236 33 1 2.0343 -5.2827 -1.5725 34 1 1.7271 -3.6272 -2.1792 35 1 1.8575 -4.9611 -3.1597 36 1 -0.7903 -7.7777 -7.3215 37 1 -3.0255 -6.5776 -3.9745 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032660723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:40 Heat of formation + Delta-G solvation = 127.274068 kcal Electronic energy + Delta-G solvation = -24472.444974 eV Core-core repulsion = 20958.997794 eV Total energy + Delta-G solvation = -3513.447180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.82947 -41.83572 -39.61852 -37.41253 -35.60182 -33.67637 -31.84295 -30.65417 -30.42073 -30.25212 -27.22941 -26.51144 -24.84482 -23.82929 -22.59329 -21.83278 -21.38616 -20.54429 -19.45916 -18.82340 -18.02191 -17.52915 -17.33911 -16.83515 -16.23716 -16.06094 -15.81558 -15.54924 -15.25392 -14.97004 -14.83524 -14.56545 -13.78870 -13.61279 -13.42635 -13.18717 -13.07936 -12.86287 -12.77651 -12.64735 -12.30040 -12.20338 -12.00110 -11.88711 -11.56454 -11.51418 -11.35875 -11.31990 -10.76071 -10.57659 -9.77058 -8.93290 -8.50749 -7.85794 -5.21390 -0.59612 0.00424 0.37692 0.60863 1.13758 1.47686 1.48632 1.58159 1.71613 1.91683 1.97404 2.48043 3.12625 3.32732 3.38389 3.52606 3.60468 3.69879 3.74580 3.91983 4.00065 4.10226 4.20503 4.35390 4.41794 4.53632 4.64353 4.77924 4.82879 5.01099 5.11723 5.19570 5.27932 5.44787 5.46235 5.65583 5.80657 6.08412 6.34051 6.64971 6.77682 7.01726 7.70505 8.39088 9.25658 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.003843 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.541761 B = 7283.291748 C = 7607.032470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.070 4.070 3 Si 0.972 3.028 4 H -0.255 1.255 5 H -0.303 1.303 6 H -0.300 1.300 7 C -0.226 4.226 8 H 0.101 0.899 9 N -0.616 5.616 10 C 0.184 3.816 11 C 0.106 3.894 12 H 0.117 0.883 13 C -0.127 4.127 14 C 0.140 3.860 15 H 0.147 0.853 16 C 0.066 3.934 17 N -0.590 5.590 18 C 0.583 3.417 19 O -0.580 6.580 20 C 0.007 3.993 21 C -0.165 4.165 22 S 0.241 5.759 23 C -0.125 4.125 24 C 0.013 3.987 25 N -0.474 5.474 26 C 0.192 3.808 27 N -0.392 5.392 28 H 0.242 0.758 29 H 0.021 0.979 30 H -0.004 1.004 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.237 0.763 36 H 0.213 0.787 37 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.531 -15.479 -6.532 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.263 4.263 3 Si 0.802 3.198 4 H -0.179 1.179 5 H -0.231 1.231 6 H -0.227 1.227 7 C -0.355 4.355 8 H 0.119 0.881 9 N -0.340 5.340 10 C 0.058 3.942 11 C 0.004 3.996 12 H 0.135 0.865 13 C -0.166 4.166 14 C 0.033 3.967 15 H 0.165 0.835 16 C -0.057 4.057 17 N -0.321 5.321 18 C 0.371 3.629 19 O -0.462 6.462 20 C -0.107 4.107 21 C -0.305 4.305 22 S 0.502 5.498 23 C -0.349 4.349 24 C -0.145 4.145 25 N -0.189 5.189 26 C -0.090 4.090 27 N -0.070 5.070 28 H 0.052 0.948 29 H 0.040 0.960 30 H 0.015 0.985 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.091 0.909 35 H 0.252 0.748 36 H 0.230 0.770 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 8.347 -15.721 -7.558 19.337 hybrid contribution -1.231 2.132 1.146 2.715 sum 7.116 -13.589 -6.412 16.626 Atomic orbital electron populations 1.70150 1.06668 1.25022 1.58893 1.25622 0.96270 1.01139 1.03228 0.85086 0.78816 0.79891 0.76004 1.17856 1.23130 1.22724 1.19596 0.91419 0.82869 1.41568 0.88085 1.45524 1.01272 1.01231 1.85969 1.21448 0.85311 0.90003 0.97465 1.24265 0.99994 0.94320 0.81069 0.86486 1.24167 0.93076 1.01191 0.98213 1.23683 0.98784 0.82933 0.91259 0.83539 1.23861 0.78827 1.01267 1.01778 1.48933 1.10420 1.57916 1.14850 1.16784 0.85496 0.78579 0.82080 1.90808 1.15137 1.60319 1.79943 1.18547 0.91776 1.06549 0.93864 1.27411 0.97585 1.02629 1.02871 1.84217 0.96701 1.55571 1.13347 1.25110 1.00010 1.13991 0.95798 1.22365 0.86065 1.04485 1.01544 1.70205 1.23861 1.18684 1.06160 1.25582 0.85350 1.00897 0.97178 1.43898 1.10117 1.38852 1.14136 0.94839 0.96041 0.98533 0.87431 0.89609 0.86392 0.90943 0.74768 0.77021 0.76830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.41 10.56 21.65 0.23 -56.18 16 2 C -0.07 -3.73 5.49 84.86 0.47 -3.27 16 3 Si 0.97 43.31 29.55 68.60 2.03 45.34 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.50 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.23 -11.03 10.37 84.03 0.87 -10.15 16 8 H 0.10 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.62 -26.64 3.02 -649.50 -1.96 -28.60 16 10 C 0.18 8.53 4.75 86.97 0.41 8.94 16 11 C 0.11 3.69 5.22 46.88 0.24 3.94 16 12 H 0.12 4.08 8.07 -2.39 -0.02 4.06 16 13 C -0.13 -3.36 6.83 33.61 0.23 -3.13 16 14 C 0.14 3.98 5.53 46.95 0.26 4.24 16 15 H 0.15 3.23 8.14 -2.39 -0.02 3.21 16 16 C 0.07 1.66 4.28 87.16 0.37 2.03 16 17 N -0.59 -18.95 2.95 -773.81 -2.28 -21.24 16 18 C 0.58 20.47 7.84 86.33 0.68 21.14 16 19 O -0.58 -24.27 16.38 -4.53 -0.07 -24.34 16 20 C 0.01 0.20 6.70 39.07 0.26 0.46 16 21 C -0.17 -3.52 9.68 66.74 0.65 -2.87 16 22 S 0.24 4.24 23.33 -56.49 -1.32 2.92 16 23 C -0.13 -3.14 7.81 83.60 0.65 -2.49 16 24 C 0.01 0.33 11.93 83.95 1.00 1.33 16 25 N -0.47 -14.15 11.21 -197.67 -2.22 -16.37 16 26 C 0.19 6.00 12.38 179.54 2.22 8.22 16 27 N -0.39 -11.83 3.20 -344.99 -1.10 -12.94 16 28 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.02 1.14 7.46 -2.38 -0.02 1.12 16 30 H 0.00 -0.20 7.67 -2.39 -0.02 -0.22 16 31 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.12 1.81 6.77 -2.39 -0.02 1.80 16 34 H 0.07 2.02 7.08 -2.39 -0.02 2.00 16 35 H 0.24 3.93 3.57 -2.91 -0.01 3.92 16 36 H 0.21 3.51 8.06 -2.91 -0.02 3.48 16 37 H 0.22 6.49 7.69 -2.91 -0.02 6.47 16 Total: -1.00 -73.33 317.27 2.74 -70.59 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.12 Total: 12.43 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 8.32 Total: 28.39 kcal Atomic # 7 Polarization: -127.98 SS G_CDS: -7.34 Total: -135.32 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.07 Total: -24.34 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.32 Total: 2.92 kcal Total: -73.33 2.74 -70.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032660723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.865 kcal (2) G-P(sol) polarization free energy of solvation -73.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds