Wall clock time and date at job start Tue Mar 31 2020 12:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99787 * 2 1 4 4 H 1.48498 * 109.47358 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47643 * 300.00038 * 3 2 1 6 6 H 1.48507 * 109.46864 * 60.00039 * 3 2 1 7 7 C 1.37878 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99995 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47387 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47015 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99717 * 180.02562 * 12 11 10 14 14 O 1.21549 * 120.00270 * 359.97438 * 13 12 11 15 15 C 1.47886 * 120.00196 * 180.02562 * 13 12 11 16 16 C 1.40559 * 119.70764 * 359.97438 * 15 13 12 17 17 C 1.35832 * 120.72912 * 180.02562 * 16 15 13 18 18 C 1.40509 * 119.98493 * 359.97438 * 17 16 15 19 19 C 1.40962 * 121.14018 * 179.97438 * 18 17 16 20 20 Cl 1.73605 * 120.91570 * 0.05629 * 19 18 17 21 21 C 1.36717 * 118.17199 * 180.02562 * 19 18 17 22 22 C 1.39325 * 119.92377 * 0.02562 * 21 19 18 23 23 N 1.31058 * 121.73724 * 0.02562 * 22 21 19 24 24 C 1.33774 * 121.37847 * 359.97438 * 23 22 21 25 25 C 1.38412 * 119.71454 * 179.97438 * 15 13 12 26 26 H 0.97000 * 119.99895 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47199 * 59.99807 * 9 7 2 28 28 H 1.09004 * 109.47176 * 299.99729 * 9 7 2 29 29 H 1.09003 * 109.47037 * 59.99885 * 10 9 7 30 30 H 1.08996 * 109.47577 * 300.00049 * 10 9 7 31 31 H 1.08989 * 109.46908 * 60.00130 * 11 10 9 32 32 H 1.08998 * 109.46564 * 299.99947 * 11 10 9 33 33 H 0.96999 * 120.00143 * 0.02562 * 12 11 10 34 34 H 1.08000 * 119.64116 * 0.02562 * 16 15 13 35 35 H 1.08003 * 120.00864 * 179.97438 * 17 16 15 36 36 H 1.07996 * 120.04272 * 179.97438 * 21 19 18 37 37 H 1.07999 * 119.13279 * 179.71774 * 22 21 19 38 38 H 1.07997 * 120.23015 * 359.97438 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 7 2.4325 -6.1006 -0.0037 13 6 1.9833 -7.3712 -0.0047 14 8 0.7883 -7.5934 -0.0048 15 6 2.9443 -8.4953 -0.0045 16 6 4.3249 -8.2314 -0.0038 17 6 5.2259 -9.2479 -0.0041 18 6 4.7808 -10.5807 -0.0046 19 6 5.6943 -11.6542 -0.0055 20 17 7.4067 -11.3683 -0.0046 21 6 5.1947 -12.9269 -0.0065 22 6 3.8167 -13.1325 -0.0072 23 7 2.9703 -12.1319 -0.0074 24 6 3.3925 -10.8625 -0.0064 25 6 2.4764 -9.7979 -0.0050 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5563 -0.8920 28 1 0.6242 -2.5575 0.8880 29 1 2.8721 -3.6050 0.8873 30 1 2.8721 -3.6035 -0.8926 31 1 0.8536 -5.0443 -0.8930 32 1 0.8541 -5.0453 0.8869 33 1 3.3862 -5.9233 -0.0032 34 1 4.6733 -7.2091 -0.0030 35 1 6.2840 -9.0318 -0.0040 36 1 5.8674 -13.7718 -0.0077 37 1 3.4360 -14.1432 -0.0126 38 1 1.4145 -9.9942 -0.0051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153347365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:34 Heat of formation + Delta-G solvation = -2.744831 kcal Electronic energy + Delta-G solvation = -22097.031213 eV Core-core repulsion = 18543.609533 eV Total energy + Delta-G solvation = -3553.421680 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40954 -39.71507 -37.40318 -37.15668 -35.54546 -33.61688 -33.41682 -31.76753 -30.77336 -30.46756 -27.07463 -25.13670 -24.47773 -23.14033 -22.43408 -21.11931 -20.50823 -18.62649 -18.15080 -17.54136 -16.64778 -16.37956 -15.60749 -15.49818 -15.10755 -15.04682 -14.54468 -14.45587 -14.25311 -14.06942 -13.93893 -13.76724 -12.91151 -12.60590 -12.34468 -12.20886 -12.12278 -11.85868 -11.73908 -11.52553 -10.94518 -10.77852 -10.60365 -10.56574 -10.16330 -10.06861 -9.91360 -9.45513 -9.38019 -9.13774 -8.90000 -8.71223 -8.39765 -6.04156 -4.07337 -0.31549 0.09557 1.28370 1.32296 2.08149 3.05121 3.11756 3.28427 3.36122 3.39390 3.64046 3.77845 3.97796 4.08026 4.31675 4.42215 4.47609 4.63556 4.66603 4.89522 4.92084 5.19278 5.31771 5.33199 5.50727 5.65616 5.72277 5.75755 5.81637 5.89827 6.10360 6.20248 6.36882 6.54514 6.75846 6.95189 7.32026 7.55713 7.60932 7.72793 7.94385 8.20801 8.35449 8.99504 9.57057 11.07119 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.024562 B = 0.002080 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.691240 B =13455.753324 C =14569.696102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.717 5.717 13 C 0.550 3.450 14 O -0.533 6.533 15 C -0.106 4.106 16 C -0.082 4.082 17 C -0.101 4.101 18 C -0.083 4.083 19 C 0.017 3.983 20 Cl -0.042 7.042 21 C -0.159 4.159 22 C 0.140 3.860 23 N -0.458 5.458 24 C 0.129 3.871 25 C -0.024 4.024 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.398 0.602 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.172 0.828 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.646 -27.866 -0.020 31.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.368 5.368 13 C 0.336 3.664 14 O -0.411 6.411 15 C -0.111 4.111 16 C -0.100 4.100 17 C -0.119 4.119 18 C -0.086 4.086 19 C -0.018 4.018 20 Cl -0.013 7.013 21 C -0.180 4.180 22 C -0.034 4.034 23 N -0.166 5.166 24 C 0.008 3.992 25 C -0.044 4.044 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.233 0.767 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.168 0.832 37 H 0.189 0.811 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 12.832 -27.868 -0.020 30.681 hybrid contribution 2.075 1.190 0.001 2.392 sum 14.907 -26.679 -0.019 30.561 Atomic orbital electron populations 1.69976 1.06054 1.26613 1.50568 1.25039 0.94868 0.99345 0.95275 0.86524 0.80023 0.83741 0.77616 1.19768 1.20990 1.20996 1.21228 0.93019 0.90902 1.50894 0.92583 1.19036 0.93847 0.90822 0.97736 1.21904 0.99832 0.93248 1.00961 1.21732 0.91796 0.84807 1.02364 1.46145 1.11043 1.05682 1.73914 1.18139 0.87966 0.82946 0.77388 1.90801 1.15953 1.84702 1.49608 1.20111 0.93734 0.94011 1.03200 1.21071 0.91671 1.00205 0.97097 1.20923 1.00743 0.90454 0.99814 1.18725 0.93221 0.94159 1.02491 1.21140 0.85819 0.94349 1.00469 1.98407 1.10031 1.96506 1.96326 1.21955 0.97742 0.96368 1.01915 1.23028 0.88404 0.98833 0.93094 1.68048 1.38750 0.98710 1.11060 1.18702 0.89662 0.91541 0.99254 1.21257 1.00716 0.89098 0.93298 0.92954 0.96212 0.96204 0.92639 0.92630 0.91387 0.91394 0.76667 0.84403 0.84123 0.83199 0.81100 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 11 C 0.12 1.96 5.67 -4.04 -0.02 1.94 16 12 N -0.72 -9.91 5.50 -61.24 -0.34 -10.24 16 13 C 0.55 8.12 7.77 -12.31 -0.10 8.02 16 14 O -0.53 -9.87 16.30 5.32 0.09 -9.78 16 15 C -0.11 -1.25 5.87 -105.01 -0.62 -1.86 16 16 C -0.08 -0.75 9.44 -39.57 -0.37 -1.12 16 17 C -0.10 -0.87 9.43 -39.59 -0.37 -1.24 16 18 C -0.08 -0.80 5.75 -106.70 -0.61 -1.41 16 19 C 0.02 0.13 6.37 -39.10 -0.25 -0.11 16 20 Cl -0.04 -0.28 27.63 -51.86 -1.43 -1.72 16 21 C -0.16 -0.97 9.84 -39.73 -0.39 -1.36 16 22 C 0.14 0.96 11.15 -17.48 -0.19 0.76 16 23 N -0.46 -4.72 10.34 -11.00 -0.11 -4.84 16 24 C 0.13 1.43 6.60 -84.88 -0.56 0.86 16 25 C -0.02 -0.29 9.56 -38.69 -0.37 -0.66 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.23 8.14 -51.94 -0.42 0.80 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.40 4.28 6.46 -40.82 -0.26 4.01 16 34 H 0.14 0.94 6.34 -52.49 -0.33 0.61 16 35 H 0.14 0.95 7.03 -52.48 -0.37 0.58 16 36 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 38 H 0.16 1.96 7.60 -52.49 -0.40 1.56 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -33.23 344.61 -9.73 -42.95 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.29 Total: -0.61 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -4.55 Total: -11.38 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.29 Total: -40.95 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.43 Total: -1.72 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.23 -9.73 -42.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153347365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.207 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds