Wall clock time and date at job start Tue Mar 31 2020 12:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99787 * 2 1 4 4 H 1.48498 * 109.47358 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47643 * 300.00038 * 3 2 1 6 6 H 1.48507 * 109.46864 * 60.00039 * 3 2 1 7 7 C 1.37878 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99995 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47387 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47015 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99717 * 180.02562 * 12 11 10 14 14 O 1.21549 * 120.00270 * 359.97438 * 13 12 11 15 15 C 1.47886 * 120.00196 * 180.02562 * 13 12 11 16 16 C 1.40559 * 119.70764 * 359.97438 * 15 13 12 17 17 C 1.35832 * 120.72912 * 180.02562 * 16 15 13 18 18 C 1.40509 * 119.98493 * 359.97438 * 17 16 15 19 19 C 1.40962 * 121.14018 * 179.97438 * 18 17 16 20 20 Cl 1.73605 * 120.91570 * 0.05629 * 19 18 17 21 21 C 1.36717 * 118.17199 * 180.02562 * 19 18 17 22 22 C 1.39325 * 119.92377 * 0.02562 * 21 19 18 23 23 N 1.31058 * 121.73724 * 0.02562 * 22 21 19 24 24 C 1.33774 * 121.37847 * 359.97438 * 23 22 21 25 25 C 1.38412 * 119.71454 * 179.97438 * 15 13 12 26 26 H 0.97000 * 119.99895 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47199 * 59.99807 * 9 7 2 28 28 H 1.09004 * 109.47176 * 299.99729 * 9 7 2 29 29 H 1.09003 * 109.47037 * 59.99885 * 10 9 7 30 30 H 1.08996 * 109.47577 * 300.00049 * 10 9 7 31 31 H 1.08989 * 109.46908 * 60.00130 * 11 10 9 32 32 H 1.08998 * 109.46564 * 299.99947 * 11 10 9 33 33 H 0.96999 * 120.00143 * 0.02562 * 12 11 10 34 34 H 1.08000 * 119.64116 * 0.02562 * 16 15 13 35 35 H 1.08003 * 120.00864 * 179.97438 * 17 16 15 36 36 H 1.07996 * 120.04272 * 179.97438 * 21 19 18 37 37 H 1.07999 * 119.13279 * 179.71774 * 22 21 19 38 38 H 1.07997 * 120.23015 * 359.97438 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 7 2.4325 -6.1006 -0.0037 13 6 1.9833 -7.3712 -0.0047 14 8 0.7883 -7.5934 -0.0048 15 6 2.9443 -8.4953 -0.0045 16 6 4.3249 -8.2314 -0.0038 17 6 5.2259 -9.2479 -0.0041 18 6 4.7808 -10.5807 -0.0046 19 6 5.6943 -11.6542 -0.0055 20 17 7.4067 -11.3683 -0.0046 21 6 5.1947 -12.9269 -0.0065 22 6 3.8167 -13.1325 -0.0072 23 7 2.9703 -12.1319 -0.0074 24 6 3.3925 -10.8625 -0.0064 25 6 2.4764 -9.7979 -0.0050 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5563 -0.8920 28 1 0.6242 -2.5575 0.8880 29 1 2.8721 -3.6050 0.8873 30 1 2.8721 -3.6035 -0.8926 31 1 0.8536 -5.0443 -0.8930 32 1 0.8541 -5.0453 0.8869 33 1 3.3862 -5.9233 -0.0032 34 1 4.6733 -7.2091 -0.0030 35 1 6.2840 -9.0318 -0.0040 36 1 5.8674 -13.7718 -0.0077 37 1 3.4360 -14.1432 -0.0126 38 1 1.4145 -9.9942 -0.0051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153347365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:33 Heat of formation + Delta-G solvation = -23.565441 kcal Electronic energy + Delta-G solvation = -22097.934063 eV Core-core repulsion = 18543.609533 eV Total energy + Delta-G solvation = -3554.324530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.12719 -40.82653 -38.05803 -37.84396 -37.03950 -35.25976 -34.27600 -33.25740 -31.85301 -31.18070 -28.74793 -26.27467 -25.13133 -24.65020 -23.25776 -22.39963 -21.96517 -19.61054 -18.88122 -18.51379 -18.15797 -17.44608 -16.88286 -16.78889 -16.42190 -15.85937 -15.80919 -15.34325 -15.28546 -15.04507 -14.83684 -14.61816 -14.26169 -13.76051 -13.62345 -13.46580 -13.30518 -12.88465 -12.86756 -12.76339 -12.54281 -12.34872 -12.06626 -11.68177 -11.64907 -11.26205 -11.20463 -11.05512 -10.75037 -10.55647 -10.28174 -9.98811 -9.44066 -8.19147 -6.30372 -1.01868 -0.57556 0.55671 0.76321 1.30970 1.42325 1.42480 1.55572 1.98007 2.11839 2.42622 2.87211 3.11523 3.14885 3.36760 3.41995 3.56838 3.74529 3.91101 4.02055 4.15847 4.21024 4.27120 4.33715 4.54346 4.63327 4.71028 4.75266 4.93930 4.93996 5.04122 5.09561 5.17315 5.23693 5.35188 5.51771 5.53432 5.71338 5.84996 6.22450 6.43516 6.71109 6.87606 7.07237 7.39267 8.93145 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.024562 B = 0.002080 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.691240 B =13455.753324 C =14569.696102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.102 4.102 11 C 0.128 3.872 12 N -0.703 5.703 13 C 0.551 3.449 14 O -0.579 6.579 15 C -0.113 4.113 16 C -0.084 4.084 17 C -0.092 4.092 18 C -0.092 4.092 19 C 0.006 3.994 20 Cl -0.030 7.030 21 C -0.144 4.144 22 C 0.147 3.853 23 N -0.494 5.494 24 C 0.112 3.888 25 C -0.039 4.039 26 H 0.263 0.737 27 H -0.008 1.008 28 H -0.008 1.008 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.416 0.584 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.186 0.814 37 H 0.208 0.792 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.389 -29.135 -0.022 34.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.140 4.140 11 C 0.004 3.996 12 N -0.355 5.355 13 C 0.338 3.662 14 O -0.460 6.460 15 C -0.118 4.118 16 C -0.102 4.102 17 C -0.110 4.110 18 C -0.095 4.095 19 C -0.029 4.029 20 Cl -0.001 7.001 21 C -0.164 4.164 22 C -0.026 4.026 23 N -0.202 5.202 24 C -0.008 4.008 25 C -0.059 4.059 26 H 0.071 0.929 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.255 0.745 34 H 0.181 0.819 35 H 0.181 0.819 36 H 0.203 0.797 37 H 0.225 0.775 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 16.630 -29.141 -0.022 33.552 hybrid contribution 0.951 1.381 0.002 1.677 sum 17.581 -27.759 -0.020 32.858 Atomic orbital electron populations 1.70123 1.07949 1.27696 1.51833 1.26039 0.95755 1.03608 0.94890 0.85363 0.79253 0.78649 0.77544 1.18081 1.20675 1.20689 1.21710 0.93801 0.91924 1.50172 0.91384 1.18956 0.94490 0.92990 0.95131 1.21611 0.98476 0.91492 1.02418 1.21330 0.91906 0.85230 1.01103 1.45858 1.11497 1.04652 1.73510 1.18591 0.87869 0.83614 0.76081 1.90773 1.18147 1.85368 1.51752 1.19844 0.94324 0.92518 1.05134 1.21228 0.90179 1.01739 0.97028 1.21183 1.01633 0.89896 0.98323 1.18903 0.92938 0.95293 1.02398 1.21261 0.86268 0.94547 1.00784 1.98414 1.08864 1.96522 1.96277 1.22382 0.97907 0.96847 0.99263 1.23742 0.88689 0.99542 0.90646 1.68055 1.40259 0.99078 1.12850 1.18683 0.90186 0.91672 1.00244 1.21184 1.00228 0.90002 0.94473 0.92861 0.98928 0.98923 0.91067 0.91058 0.92824 0.92832 0.74507 0.81927 0.81888 0.79689 0.77517 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 13.29 21.45 0.28 -56.74 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 3 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.54 -29.65 9.11 25.60 0.23 -29.41 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.13 4.97 29.84 0.15 1.28 16 10 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 11 C 0.13 4.45 5.67 86.38 0.49 4.94 16 12 N -0.70 -19.21 5.50 -465.94 -2.56 -21.77 16 13 C 0.55 16.75 7.77 86.80 0.67 17.43 16 14 O -0.58 -22.79 16.30 -3.87 -0.06 -22.86 16 15 C -0.11 -2.72 5.87 -20.11 -0.12 -2.83 16 16 C -0.08 -1.40 9.44 22.28 0.21 -1.19 16 17 C -0.09 -1.39 9.43 22.27 0.21 -1.18 16 18 C -0.09 -1.63 5.75 -21.21 -0.12 -1.75 16 19 C 0.01 0.08 6.37 22.58 0.14 0.23 16 20 Cl -0.03 -0.32 27.63 -2.72 -0.08 -0.39 16 21 C -0.14 -1.27 9.84 22.18 0.22 -1.05 16 22 C 0.15 1.64 11.15 85.07 0.95 2.59 16 23 N -0.49 -9.90 10.34 -188.73 -1.95 -11.85 16 24 C 0.11 2.46 6.60 40.23 0.27 2.73 16 25 C -0.04 -0.99 9.56 22.85 0.22 -0.77 16 26 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16 27 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.42 8.18 6.46 -92.71 -0.60 7.58 16 34 H 0.16 1.77 6.34 -2.91 -0.02 1.75 16 35 H 0.16 1.68 7.03 -2.91 -0.02 1.66 16 36 H 0.19 0.29 8.06 -2.91 -0.02 0.27 16 37 H 0.21 0.61 8.06 -2.91 -0.02 0.59 16 38 H 0.14 3.84 7.60 -2.91 -0.02 3.82 16 Total: -1.00 -75.03 344.61 2.31 -72.72 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.50 Total: 7.84 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.14 Total: -12.49 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -4.23 Total: -90.37 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.06 Total: -22.86 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.39 kcal Total: -75.03 2.31 -72.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153347365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.156 kcal (2) G-P(sol) polarization free energy of solvation -75.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds