Wall clock time and date at job start Tue Mar 31 2020 12:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46489 * 120.00170 * 2 1 4 4 C 1.50695 * 109.47623 * 270.00250 * 3 2 1 5 5 H 1.07998 * 119.99746 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00236 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00128 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99819 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47436 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47269 * 120.00071 * 8 6 4 11 11 H 1.48499 * 109.47074 * 240.00100 * 8 6 4 12 12 C 1.34784 * 119.99697 * 180.02562 * 2 1 3 13 13 S 1.71192 * 119.99729 * 179.97438 * 12 2 1 14 14 N 1.34779 * 119.99736 * 359.97438 * 12 2 1 15 15 C 1.39891 * 119.99400 * 184.12566 * 14 12 2 16 16 C 1.38882 * 120.07600 * 314.79058 * 15 14 12 17 17 C 1.38107 * 119.92706 * 179.74782 * 16 15 14 18 18 C 1.38284 * 120.07425 * 0.22873 * 17 16 15 19 19 C 1.50704 * 119.92774 * 180.02562 * 18 17 16 20 20 F 1.39898 * 109.47397 * 89.99950 * 19 18 17 21 21 F 1.39901 * 109.46773 * 209.99662 * 19 18 17 22 22 F 1.39901 * 109.47083 * 329.99058 * 19 18 17 23 23 C 1.38281 * 120.14234 * 0.03936 * 18 17 16 24 24 C 1.38109 * 120.07092 * 359.97438 * 23 18 17 25 25 H 1.09003 * 109.46973 * 269.99468 * 1 2 3 26 26 H 1.09002 * 109.47546 * 29.99658 * 1 2 3 27 27 H 1.09003 * 109.47462 * 149.99464 * 1 2 3 28 28 H 1.09005 * 109.47187 * 30.00632 * 3 2 1 29 29 H 1.09003 * 109.47203 * 149.99781 * 3 2 1 30 30 H 0.96998 * 119.99954 * 179.97438 * 7 6 4 31 31 H 0.96997 * 120.00199 * 4.13388 * 14 12 2 32 32 H 1.08001 * 120.03439 * 0.02562 * 16 15 14 33 33 H 1.08007 * 119.96351 * 180.24644 * 17 16 15 34 34 H 1.08004 * 119.96370 * 180.02562 * 23 18 17 35 35 H 1.07995 * 120.03464 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0974 1.0962 -2.2416 6 6 3.1269 2.8775 -1.6726 7 7 3.5543 3.6175 -0.6730 8 14 3.4376 3.4171 -3.4338 9 1 2.8597 2.4172 -4.3672 10 1 2.8007 4.7383 -3.6664 11 1 4.9001 3.5246 -3.6679 12 6 2.1388 -1.1673 -0.0005 13 16 3.8508 -1.1673 -0.0012 14 7 1.4648 -2.3345 -0.0005 15 6 2.1616 -3.5444 0.0861 16 6 3.2934 -3.7530 -0.6913 17 6 3.9820 -4.9466 -0.5995 18 6 3.5429 -5.9354 0.2618 19 6 4.2971 -7.2365 0.3598 20 9 5.2781 -7.1333 1.3518 21 9 3.4091 -8.2667 0.6874 22 9 4.9041 -7.5173 -0.8690 23 6 2.4132 -5.7331 1.0331 24 6 1.7199 -4.5418 0.9458 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6084 2.0283 0.5140 29 1 3.1499 1.1383 0.5139 30 1 4.0318 4.4430 -0.8502 31 1 0.4967 -2.3355 -0.0607 32 1 3.6373 -2.9808 -1.3635 33 1 4.8645 -5.1079 -1.2008 34 1 2.0731 -6.5071 1.7051 35 1 0.8379 -4.3842 1.5488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196160670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:46 Heat of formation + Delta-G solvation = -91.477454 kcal Electronic energy + Delta-G solvation = -23669.243329 eV Core-core repulsion = 19572.160880 eV Total energy + Delta-G solvation = -4097.082450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.071 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.20619 -47.73632 -47.65559 -40.19835 -38.40988 -35.49465 -32.76802 -31.22719 -30.76438 -28.42558 -27.32376 -25.49188 -23.73096 -23.07838 -21.74666 -21.08869 -18.62781 -18.50653 -18.45929 -18.13852 -17.62152 -16.71106 -15.62648 -15.34004 -14.86301 -14.63853 -14.51764 -14.49717 -14.28082 -14.14111 -13.91912 -13.86586 -13.83358 -13.48338 -13.36275 -13.22356 -12.42816 -12.29773 -12.11856 -11.71016 -11.47439 -11.34613 -10.99427 -10.80287 -10.50300 -10.24608 -10.04642 -9.29761 -9.12633 -8.54644 -8.27203 -7.09754 -6.39198 -6.15603 -4.20480 0.75648 1.30050 1.92998 2.41830 2.62841 3.04291 3.24898 3.34092 3.36099 3.47856 3.61085 3.70692 3.98752 4.36396 4.39459 4.74597 4.79540 4.95468 5.17690 5.20414 5.29340 5.34189 5.46575 5.66025 5.79304 5.92775 6.11947 6.17928 6.40071 6.47943 6.83456 6.97255 7.28808 7.34579 7.73729 7.78029 8.00665 8.78051 9.43283 10.93003 Molecular weight = 318.07amu Principal moments of inertia in cm(-1) A = 0.023095 B = 0.003119 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.071199 B = 8976.506542 C = 9595.680501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.532 5.532 3 C 0.234 3.766 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.901 3.099 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.280 1.280 12 C 0.547 3.453 13 S -0.621 6.621 14 N -0.657 5.657 15 C 0.178 3.822 16 C -0.071 4.071 17 C -0.067 4.067 18 C -0.190 4.190 19 C 0.510 3.490 20 F -0.178 7.178 21 F -0.181 7.181 22 F -0.178 7.178 23 C -0.070 4.070 24 C -0.135 4.135 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.265 0.735 31 H 0.403 0.597 32 H 0.163 0.837 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.726 -18.355 2.771 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.235 5.235 3 C 0.116 3.884 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.729 3.271 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.206 1.206 12 C 0.189 3.811 13 S -0.485 6.485 14 N -0.288 5.288 15 C 0.083 3.917 16 C -0.094 4.094 17 C -0.087 4.087 18 C -0.192 4.192 19 C 0.456 3.544 20 F -0.159 7.159 21 F -0.163 7.163 22 F -0.160 7.160 23 C -0.090 4.090 24 C -0.156 4.156 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.242 0.758 32 H 0.180 0.820 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.556 -17.911 2.846 19.284 hybrid contribution -1.097 0.257 -0.868 1.422 sum -7.652 -17.654 1.979 19.342 Atomic orbital electron populations 1.22043 0.80729 1.03846 1.02094 1.47861 1.06330 1.06647 1.62665 1.20089 0.93997 0.74850 0.99481 1.21123 1.37674 1.06491 0.90950 0.92425 1.24837 0.94890 0.96176 0.97575 1.69921 1.37692 1.14288 1.30740 0.86390 0.78367 0.78144 0.84200 1.19858 1.21038 1.20617 1.22333 0.95758 0.81117 0.81864 1.93191 0.89304 1.92530 1.73506 1.42339 1.09417 1.02837 1.74185 1.17579 0.94643 0.84205 0.95285 1.21723 0.93494 0.95764 0.98457 1.20762 0.99685 0.91458 0.96832 1.19918 0.99789 0.94309 1.05223 1.18343 0.77480 0.84927 0.73666 1.93228 1.64089 1.96279 1.62299 1.93166 1.68422 1.62108 1.92589 1.93183 1.84338 1.94528 1.43932 1.20517 0.93335 0.97298 0.97829 1.20824 1.02269 0.93801 0.98699 0.91712 0.88559 0.92218 0.94107 0.90186 0.92536 0.75759 0.81960 0.84502 0.84751 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 10.24 59.85 0.61 1.36 16 2 N -0.53 -9.86 2.86 -185.00 -0.53 -10.39 16 3 C 0.23 5.55 4.92 -5.20 -0.03 5.53 16 4 C -0.52 -13.74 9.39 -34.44 -0.32 -14.06 16 5 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 7 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.55 10.11 7.56 -86.91 -0.66 9.46 16 13 S -0.62 -14.25 24.22 -107.50 -2.60 -16.85 16 14 N -0.66 -8.97 5.19 -11.40 -0.06 -9.02 16 15 C 0.18 2.39 5.93 -83.70 -0.50 1.89 16 16 C -0.07 -1.04 7.87 -39.39 -0.31 -1.35 16 17 C -0.07 -0.86 9.39 -39.61 -0.37 -1.23 16 18 C -0.19 -2.25 5.46 -104.59 -0.57 -2.82 16 19 C 0.51 5.82 3.36 36.01 0.12 5.94 16 20 F -0.18 -2.20 17.30 2.25 0.04 -2.16 16 21 F -0.18 -1.96 16.46 2.25 0.04 -1.93 16 22 F -0.18 -2.08 16.46 2.25 0.04 -2.04 16 23 C -0.07 -0.74 9.39 -39.61 -0.37 -1.11 16 24 C -0.13 -1.44 9.97 -39.39 -0.39 -1.84 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 27 H 0.06 0.57 6.31 -51.93 -0.33 0.24 16 28 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 29 H 0.08 2.18 6.58 -51.93 -0.34 1.84 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 31 H 0.40 4.05 6.52 -40.82 -0.27 3.78 16 32 H 0.16 2.78 6.09 -44.03 -0.27 2.52 16 33 H 0.14 1.59 7.60 -52.48 -0.40 1.19 16 34 H 0.13 1.11 7.60 -52.48 -0.40 0.71 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 324.72 15.07 4.89 4.89 Total: -1.00 -31.58 324.72 -8.58 -40.17 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -3.23 Total: 2.16 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -2.88 Total: 3.53 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.15 Total: -43.89 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.11 Total: -6.13 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -14.25 SS G_CDS: -2.60 Total: -16.85 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.58 -8.58 -40.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196160670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.311 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds