Wall clock time and date at job start Tue Mar 31 2020 12:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46489 * 120.00170 * 2 1 4 4 C 1.50695 * 109.47623 * 270.00250 * 3 2 1 5 5 H 1.07998 * 119.99746 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00236 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00128 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99819 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47436 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47269 * 120.00071 * 8 6 4 11 11 H 1.48499 * 109.47074 * 240.00100 * 8 6 4 12 12 C 1.34784 * 119.99697 * 180.02562 * 2 1 3 13 13 S 1.71192 * 119.99729 * 179.97438 * 12 2 1 14 14 N 1.34779 * 119.99736 * 359.97438 * 12 2 1 15 15 C 1.39891 * 119.99400 * 184.12566 * 14 12 2 16 16 C 1.38882 * 120.07600 * 314.79058 * 15 14 12 17 17 C 1.38107 * 119.92706 * 179.74782 * 16 15 14 18 18 C 1.38284 * 120.07425 * 0.22873 * 17 16 15 19 19 C 1.50704 * 119.92774 * 180.02562 * 18 17 16 20 20 F 1.39898 * 109.47397 * 89.99950 * 19 18 17 21 21 F 1.39901 * 109.46773 * 209.99662 * 19 18 17 22 22 F 1.39901 * 109.47083 * 329.99058 * 19 18 17 23 23 C 1.38281 * 120.14234 * 0.03936 * 18 17 16 24 24 C 1.38109 * 120.07092 * 359.97438 * 23 18 17 25 25 H 1.09003 * 109.46973 * 269.99468 * 1 2 3 26 26 H 1.09002 * 109.47546 * 29.99658 * 1 2 3 27 27 H 1.09003 * 109.47462 * 149.99464 * 1 2 3 28 28 H 1.09005 * 109.47187 * 30.00632 * 3 2 1 29 29 H 1.09003 * 109.47203 * 149.99781 * 3 2 1 30 30 H 0.96998 * 119.99954 * 179.97438 * 7 6 4 31 31 H 0.96997 * 120.00199 * 4.13388 * 14 12 2 32 32 H 1.08001 * 120.03439 * 0.02562 * 16 15 14 33 33 H 1.08007 * 119.96351 * 180.24644 * 17 16 15 34 34 H 1.08004 * 119.96370 * 180.02562 * 23 18 17 35 35 H 1.07995 * 120.03464 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0974 1.0962 -2.2416 6 6 3.1269 2.8775 -1.6726 7 7 3.5543 3.6175 -0.6730 8 14 3.4376 3.4171 -3.4338 9 1 2.8597 2.4172 -4.3672 10 1 2.8007 4.7383 -3.6664 11 1 4.9001 3.5246 -3.6679 12 6 2.1388 -1.1673 -0.0005 13 16 3.8508 -1.1673 -0.0012 14 7 1.4648 -2.3345 -0.0005 15 6 2.1616 -3.5444 0.0861 16 6 3.2934 -3.7530 -0.6913 17 6 3.9820 -4.9466 -0.5995 18 6 3.5429 -5.9354 0.2618 19 6 4.2971 -7.2365 0.3598 20 9 5.2781 -7.1333 1.3518 21 9 3.4091 -8.2667 0.6874 22 9 4.9041 -7.5173 -0.8690 23 6 2.4132 -5.7331 1.0331 24 6 1.7199 -4.5418 0.9458 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6084 2.0283 0.5140 29 1 3.1499 1.1383 0.5139 30 1 4.0318 4.4430 -0.8502 31 1 0.4967 -2.3355 -0.0607 32 1 3.6373 -2.9808 -1.3635 33 1 4.8645 -5.1079 -1.2008 34 1 2.0731 -6.5071 1.7051 35 1 0.8379 -4.3842 1.5488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196160670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:46 Heat of formation + Delta-G solvation = -108.931497 kcal Electronic energy + Delta-G solvation = -23670.000193 eV Core-core repulsion = 19572.160880 eV Total energy + Delta-G solvation = -4097.839314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.071 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.13153 -48.64336 -48.60113 -41.35293 -39.67857 -36.81696 -34.71785 -32.19503 -31.89750 -29.96207 -28.74132 -26.67530 -25.28315 -24.24873 -22.90004 -22.41717 -19.69364 -19.45429 -19.42828 -19.25062 -18.91164 -18.67903 -17.12356 -16.53630 -16.39709 -15.74570 -15.72296 -15.54856 -15.35876 -15.31812 -15.05743 -14.85348 -14.76030 -14.47488 -14.39939 -14.29594 -14.10553 -13.62312 -13.30563 -13.22539 -12.87195 -12.69272 -12.60373 -12.30949 -12.22235 -12.10452 -11.74762 -10.70378 -10.61969 -10.10488 -9.52601 -8.81019 -8.21602 -8.09207 -6.32663 -0.31754 0.35424 0.53024 0.96935 1.37419 1.42191 1.50175 1.58904 1.70821 2.29917 2.42679 2.50617 2.76991 3.07007 3.12406 3.46374 3.83849 3.91787 3.97565 4.20223 4.29769 4.40550 4.47906 4.62017 4.76666 4.88595 4.99748 5.15096 5.18809 5.26630 5.31257 5.55831 5.68870 5.74874 5.93361 6.00114 6.36329 6.72203 7.34308 8.86437 Molecular weight = 318.07amu Principal moments of inertia in cm(-1) A = 0.023095 B = 0.003119 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.071199 B = 8976.506542 C = 9595.680501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.536 5.536 3 C 0.251 3.749 4 C -0.526 4.526 5 H 0.052 0.948 6 C 0.017 3.983 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.271 1.271 11 H -0.287 1.287 12 C 0.571 3.429 13 S -0.727 6.727 14 N -0.625 5.625 15 C 0.155 3.845 16 C -0.089 4.089 17 C -0.074 4.074 18 C -0.191 4.191 19 C 0.515 3.485 20 F -0.183 7.183 21 F -0.174 7.174 22 F -0.181 7.181 23 C -0.063 4.063 24 C -0.115 4.115 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.266 0.734 31 H 0.426 0.574 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.167 0.833 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.594 -20.192 3.091 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.237 5.237 3 C 0.130 3.870 4 C -0.565 4.565 5 H 0.070 0.930 6 C -0.182 4.182 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.196 1.196 11 H -0.214 1.214 12 C 0.209 3.791 13 S -0.594 6.594 14 N -0.257 5.257 15 C 0.060 3.940 16 C -0.112 4.112 17 C -0.095 4.095 18 C -0.193 4.193 19 C 0.461 3.539 20 F -0.165 7.165 21 F -0.155 7.155 22 F -0.163 7.163 23 C -0.082 4.082 24 C -0.135 4.135 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.270 0.730 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.184 0.816 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.507 -19.821 3.158 22.209 hybrid contribution -0.300 0.671 -0.931 1.186 sum -9.807 -19.151 2.227 21.631 Atomic orbital electron populations 1.22451 0.76538 1.05647 1.04706 1.47648 1.08677 1.05032 1.62393 1.19481 0.92902 0.76914 0.97678 1.21353 1.37026 1.06157 0.91963 0.93018 1.25627 0.94891 0.96552 1.01169 1.70022 1.38738 1.14815 1.32619 0.85460 0.77678 0.78284 0.79908 1.19324 1.19602 1.21369 1.21665 0.93855 0.82471 0.81140 1.93409 0.94578 1.93703 1.77720 1.42066 1.10318 1.01358 1.71950 1.17804 0.94909 0.84597 0.96643 1.21477 0.94800 0.95826 0.99103 1.20772 0.99763 0.91437 0.97501 1.20046 1.00281 0.94031 1.04933 1.18239 0.77338 0.84919 0.73430 1.93221 1.64396 1.96319 1.62539 1.93182 1.68080 1.61738 1.92506 1.93182 1.84420 1.94538 1.44128 1.20939 0.92223 0.97866 0.97179 1.21153 1.02775 0.92361 0.97244 0.88573 0.88901 0.88412 0.94370 0.94169 0.92490 0.73009 0.85215 0.84383 0.81565 0.81200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.10 10.24 127.77 1.31 2.41 16 2 N -0.54 -19.34 2.86 -739.22 -2.11 -21.45 16 3 C 0.25 12.14 4.92 85.63 0.42 12.57 16 4 C -0.53 -28.04 9.39 25.60 0.24 -27.80 16 5 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 6 C 0.02 0.96 5.46 84.66 0.46 1.42 16 7 N -0.92 -53.62 13.29 21.45 0.28 -53.34 16 8 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 C 0.57 20.85 7.56 179.05 1.35 22.20 16 13 S -0.73 -35.03 24.22 -56.49 -1.37 -36.40 16 14 N -0.63 -15.58 5.19 -189.98 -0.99 -16.57 16 15 C 0.15 3.86 5.93 38.16 0.23 4.09 16 16 C -0.09 -2.65 7.87 22.39 0.18 -2.48 16 17 C -0.07 -1.92 9.39 22.25 0.21 -1.71 16 18 C -0.19 -4.15 5.46 -19.84 -0.11 -4.26 16 19 C 0.51 10.83 3.36 71.24 0.24 11.07 16 20 F -0.18 -4.28 17.30 44.97 0.78 -3.50 16 21 F -0.17 -3.28 16.46 44.97 0.74 -2.54 16 22 F -0.18 -4.04 16.46 44.97 0.74 -3.30 16 23 C -0.06 -1.09 9.39 22.25 0.21 -0.88 16 24 C -0.11 -2.00 9.97 22.39 0.22 -1.78 16 25 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.09 2.18 8.07 -2.39 -0.02 2.16 16 27 H 0.10 1.39 6.31 -2.39 -0.02 1.37 16 28 H 0.04 1.86 8.07 -2.38 -0.02 1.84 16 29 H 0.04 2.30 6.58 -2.39 -0.02 2.28 16 30 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.43 6.70 6.52 -92.71 -0.60 6.10 16 32 H 0.13 4.77 6.09 -8.29 -0.05 4.72 16 33 H 0.14 3.36 7.60 -2.91 -0.02 3.34 16 34 H 0.17 1.87 7.60 -2.91 -0.02 1.85 16 35 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -73.25 324.72 5.58 -67.67 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.52 Total: 8.66 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 4.96 Total: 14.86 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -2.81 Total: -91.36 kcal Atomic # 9 Polarization: -11.59 SS G_CDS: 2.26 Total: -9.34 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -35.03 SS G_CDS: -1.37 Total: -36.40 kcal Total: -73.25 5.58 -67.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196160670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.259 kcal (2) G-P(sol) polarization free energy of solvation -73.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds