Wall clock time and date at job start Tue Mar 31 2020 12:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 114.00464 * 2 1 4 4 C 1.50697 * 109.47388 * 179.97438 * 3 2 1 5 5 C 1.38354 * 119.92260 * 270.01822 * 4 3 2 6 6 C 1.38296 * 120.26876 * 179.97438 * 5 4 3 7 7 C 1.38151 * 120.10930 * 359.72648 * 6 5 4 8 8 Cl 1.73598 * 120.07638 * 180.29650 * 7 6 5 9 9 C 1.39485 * 119.84186 * 0.55034 * 7 6 5 10 10 C 1.48277 * 120.12753 * 179.72034 * 9 7 6 11 11 C 1.39288 * 120.16459 * 244.72535 * 10 9 7 12 12 C 1.38011 * 119.94945 * 180.29857 * 11 10 9 13 13 C 1.38447 * 120.26908 * 359.44688 * 12 11 10 14 14 C 1.38118 * 120.32138 * 0.56039 * 13 12 11 15 15 C 1.38749 * 120.05047 * 359.71369 * 14 13 12 16 16 O 1.35677 * 120.13441 * 180.02562 * 15 14 13 17 17 C 1.34806 * 116.99786 * 354.41331 * 16 15 14 18 18 H 1.08000 * 120.00542 * 5.05440 * 17 16 15 19 19 C 1.38657 * 119.99888 * 185.05995 * 17 16 15 20 20 N 1.31554 * 119.99695 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47501 * 59.99880 * 21 19 17 23 23 H 1.48497 * 109.46796 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47090 * 299.99881 * 21 19 17 25 25 C 1.37987 * 119.92202 * 89.99870 * 4 3 2 26 26 H 1.09000 * 109.47484 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47144 * 300.00358 * 1 2 3 28 28 H 1.09001 * 109.47085 * 60.00192 * 1 2 3 29 29 H 1.09003 * 109.47439 * 59.99413 * 3 2 1 30 30 H 1.09006 * 109.46959 * 300.00076 * 3 2 1 31 31 H 1.08003 * 119.87018 * 0.02562 * 5 4 3 32 32 H 1.08000 * 119.94171 * 180.02562 * 6 5 4 33 33 H 1.08001 * 120.02642 * 0.02923 * 11 10 9 34 34 H 1.07996 * 119.86752 * 179.72086 * 12 11 10 35 35 H 1.07993 * 119.83870 * 180.30030 * 13 12 11 36 36 H 1.08003 * 119.97402 * 179.74480 * 14 13 12 37 37 H 0.97004 * 119.99861 * 180.02562 * 20 19 17 38 38 H 1.08000 * 120.05864 * 0.04886 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2001 1.1316 1.2000 6 6 5.5786 1.0218 1.2090 7 6 6.2767 0.9605 0.0184 8 17 8.0066 0.8149 0.0306 9 6 5.5888 1.0211 -1.1935 10 6 6.3322 0.9620 -2.4751 11 6 6.3312 2.0570 -3.3359 12 6 7.0195 1.9949 -4.5305 13 6 7.7217 0.8519 -4.8727 14 6 7.7302 -0.2405 -4.0276 15 6 7.0381 -0.1947 -2.8259 16 8 7.0457 -1.2666 -1.9942 17 6 7.6473 -2.3859 -2.4440 18 1 8.1658 -2.3770 -3.3914 19 6 7.6005 -3.5489 -1.6904 20 7 6.9693 -3.5597 -0.5362 21 14 8.4335 -5.1002 -2.3140 22 1 9.8858 -4.8454 -2.4906 23 1 8.2397 -6.1956 -1.3304 24 1 7.8378 -5.4925 -3.6165 25 6 4.1992 1.1317 -1.1950 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.6579 1.1740 2.1332 32 1 6.1099 0.9792 2.1483 33 1 5.7885 2.9523 -3.0708 34 1 7.0141 2.8431 -5.1990 35 1 8.2619 0.8126 -5.8070 36 1 8.2765 -1.1309 -4.3021 37 1 6.9369 -4.3731 -0.0088 38 1 3.6611 1.1750 -2.1304 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222269204.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:16 Heat of formation + Delta-G solvation = -26.706919 kcal Electronic energy + Delta-G solvation = -23836.346892 eV Core-core repulsion = 20249.593386 eV Total energy + Delta-G solvation = -3586.753505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.55857 -38.58705 -37.40095 -36.26223 -35.65628 -32.45318 -32.09049 -31.27677 -29.14518 -28.26092 -27.04790 -25.31921 -25.09605 -23.06163 -21.60036 -21.28903 -20.09416 -17.91205 -17.16390 -16.39790 -16.26192 -15.98014 -15.49982 -14.83995 -14.79293 -14.50713 -14.37645 -13.81583 -13.50023 -13.41787 -12.82541 -12.80890 -12.74733 -12.43243 -12.28719 -11.66657 -11.58695 -11.36603 -11.29898 -10.98037 -10.83905 -10.74254 -10.65559 -10.61227 -10.42302 -10.06883 -9.67665 -9.31788 -8.79877 -8.57925 -8.21077 -7.86149 -7.13767 -6.39292 -3.97252 1.47505 1.67356 2.21404 2.42435 2.88094 3.15726 3.16944 3.19174 3.73177 3.99521 4.32049 4.57762 4.97649 4.99473 5.12617 5.20014 5.25611 5.28669 5.31413 5.38606 5.43636 5.60790 5.63548 5.67107 5.83545 5.87849 6.04280 6.13082 6.30406 6.34729 6.53363 6.71233 6.71822 6.83104 6.91676 7.10881 7.12283 7.18726 7.29449 7.38664 7.43311 7.82317 8.02684 9.04698 9.74484 10.76819 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.005367 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.348282 B = 5215.816089 C = 6156.369583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.108 3.892 4 C -0.100 4.100 5 C -0.096 4.096 6 C -0.116 4.116 7 C 0.003 3.997 8 Cl -0.055 7.055 9 C 0.000 4.000 10 C -0.143 4.143 11 C -0.055 4.055 12 C -0.220 4.220 13 C -0.066 4.066 14 C -0.236 4.236 15 C 0.175 3.825 16 O -0.153 6.153 17 C -0.394 4.394 18 H 0.090 0.910 19 C 0.045 3.955 20 N -0.850 5.850 21 Si 0.936 3.064 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.078 4.078 26 H 0.085 0.915 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.270 0.730 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.258 10.126 0.768 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.032 3.968 4 C -0.100 4.100 5 C -0.115 4.115 6 C -0.135 4.135 7 C -0.024 4.024 8 Cl -0.026 7.026 9 C -0.001 4.001 10 C -0.145 4.145 11 C -0.073 4.073 12 C -0.239 4.239 13 C -0.085 4.085 14 C -0.256 4.256 15 C 0.120 3.880 16 O -0.055 6.055 17 C -0.470 4.470 18 H 0.107 0.893 19 C -0.161 4.161 20 N -0.483 5.483 21 Si 0.761 3.239 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.096 4.096 26 H 0.104 0.896 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.080 0.920 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.129 9.709 1.217 12.107 hybrid contribution 0.451 -0.750 -0.393 0.960 sum -6.678 8.959 0.823 11.204 Atomic orbital electron populations 1.22741 0.81464 1.02775 0.99624 1.88078 1.19155 1.27405 1.95286 1.21291 0.90022 0.85042 1.00444 1.19394 0.93699 1.03450 0.93476 1.20810 0.93266 1.00083 0.97307 1.20869 0.94050 1.01776 0.96778 1.21053 0.85599 1.01609 0.94112 1.98363 1.09575 1.95836 1.98824 1.18428 0.92288 0.97963 0.91395 1.17639 1.06181 0.94676 0.95975 1.20622 0.97643 0.95843 0.93168 1.20459 1.05889 0.98935 0.98596 1.20803 0.96919 0.92934 0.97822 1.21097 1.07222 1.00550 0.96705 1.19248 0.91480 0.88273 0.89023 1.84007 1.66595 1.17438 1.37432 1.21252 1.33072 0.86196 1.06467 0.89300 1.25228 0.97064 0.98295 0.95524 1.70048 1.38588 1.28588 1.11090 0.85864 0.79414 0.80068 0.78587 1.19580 1.20317 1.19560 1.20991 0.92419 0.98744 0.97482 0.89639 0.94296 0.94191 0.92655 0.92575 0.85807 0.85307 0.87082 0.87563 0.87558 0.85452 0.92046 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.80 10.69 -35.23 -0.38 -6.18 16 3 C 0.11 1.42 6.06 36.00 0.22 1.64 16 4 C -0.10 -1.63 5.50 -104.67 -0.58 -2.20 16 5 C -0.10 -1.53 9.69 -39.52 -0.38 -1.92 16 6 C -0.12 -2.05 9.82 -39.59 -0.39 -2.44 16 7 C 0.00 0.06 6.08 -39.15 -0.24 -0.17 16 8 Cl -0.06 -1.17 26.62 -51.86 -1.38 -2.55 16 9 C 0.00 0.00 4.95 -104.87 -0.52 -0.52 16 10 C -0.14 -3.06 4.68 -104.73 -0.49 -3.55 16 11 C -0.05 -1.00 9.73 -39.27 -0.38 -1.38 16 12 C -0.22 -3.83 10.03 -39.59 -0.40 -4.22 16 13 C -0.07 -1.23 10.03 -39.55 -0.40 -1.63 16 14 C -0.24 -5.18 9.16 -39.44 -0.36 -5.54 16 15 C 0.18 4.23 5.89 -38.74 -0.23 4.00 16 16 O -0.15 -4.26 8.16 0.34 0.00 -4.25 16 17 C -0.39 -10.91 9.49 30.89 0.29 -10.61 16 18 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 19 C 0.04 1.22 5.49 -17.52 -0.10 1.12 16 20 N -0.85 -24.84 13.67 55.48 0.76 -24.08 16 21 Si 0.94 20.70 29.55 -169.99 -5.02 15.67 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 25 C -0.08 -1.42 9.39 -39.24 -0.37 -1.79 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.13 2.78 5.64 -52.48 -0.30 2.49 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -31.84 345.11 -8.37 -40.21 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.35 Total: 3.74 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -3.20 Total: -27.76 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.76 Total: -24.08 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.37 Total: -10.43 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.38 Total: -2.55 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.84 -8.37 -40.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222269204.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.500 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds