Wall clock time and date at job start Tue Mar 31 2020 12:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35977 * 116.99939 * 2 1 4 4 C 1.38715 * 119.99464 * 179.97438 * 3 2 1 5 5 C 1.38131 * 120.02175 * 180.02562 * 4 3 2 6 6 C 1.38672 * 120.01257 * 0.02562 * 5 4 3 7 7 O 1.36007 * 120.00562 * 179.97438 * 6 5 4 8 8 C 1.42908 * 117.00024 * 7.09902 * 7 6 5 9 9 H 1.09001 * 109.46578 * 37.44302 * 8 7 6 10 10 C 1.50698 * 109.46912 * 277.44505 * 8 7 6 11 11 H 1.08001 * 119.99838 * 125.60017 * 10 8 7 12 12 C 1.37884 * 120.00057 * 305.60067 * 10 8 7 13 13 N 1.31517 * 119.99731 * 9.54659 * 12 10 8 14 14 Si 1.86803 * 119.99785 * 189.54637 * 12 10 8 15 15 H 1.48494 * 109.46884 * 90.00018 * 14 12 10 16 16 H 1.48499 * 109.46612 * 210.00157 * 14 12 10 17 17 H 1.48501 * 109.47292 * 330.00048 * 14 12 10 18 18 C 1.50703 * 109.47140 * 157.44409 * 8 7 6 19 19 C 1.38236 * 119.99821 * 29.72459 * 18 8 7 20 20 C 1.38236 * 119.99506 * 179.97438 * 19 18 8 21 21 C 1.38236 * 120.00092 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00248 * 0.07025 * 21 20 19 23 23 C 1.38230 * 119.99783 * 209.69916 * 18 8 7 24 24 C 1.38781 * 119.99552 * 0.25403 * 6 5 4 25 25 Cl 1.73594 * 120.01638 * 179.74771 * 24 6 5 26 26 C 1.38245 * 119.97395 * 359.48898 * 24 6 5 27 27 H 1.08997 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46980 * 300.00076 * 1 2 3 29 29 H 1.09001 * 109.46853 * 59.99630 * 1 2 3 30 30 H 1.08002 * 119.98551 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.99452 * 179.97438 * 5 4 3 32 32 H 0.96995 * 119.99409 * 179.97438 * 13 12 10 33 33 H 1.08000 * 120.00557 * 359.96898 * 19 18 8 34 34 H 1.08007 * 119.99495 * 179.71637 * 20 19 18 35 35 H 1.08000 * 119.99450 * 179.97438 * 21 20 19 36 36 H 1.07994 * 120.00009 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.00053 * 359.97438 * 23 18 8 38 38 H 1.08002 * 120.00854 * 180.27857 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4316 1.2841 0.0005 5 6 4.0593 2.5145 0.0011 6 6 3.3048 3.6780 0.0016 7 8 3.9230 4.8895 0.0027 8 6 5.3434 4.8932 -0.1542 9 1 5.6329 4.1151 -0.8604 10 6 5.9966 4.6306 1.1783 11 1 6.7076 3.8243 1.2815 12 6 5.6864 5.4198 2.2656 13 7 4.6901 6.2753 2.1942 14 14 6.6813 5.2736 3.8398 15 1 7.8244 6.2203 3.7926 16 1 5.8174 5.5982 5.0032 17 1 7.1930 3.8861 3.9751 18 6 5.7877 6.2355 -0.6756 19 6 5.0648 7.3718 -0.3640 20 6 5.4727 8.6031 -0.8419 21 6 6.6038 8.6982 -1.6310 22 6 7.3262 7.5618 -1.9433 23 6 6.9185 6.3305 -1.4651 24 6 1.9189 3.6062 0.0069 25 17 0.9739 5.0624 0.0142 26 6 1.2910 2.3746 0.0010 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 4.0195 0.3781 0.0005 31 1 5.1378 2.5704 0.0019 32 1 4.4717 6.8302 2.9593 33 1 4.1813 7.2977 0.2527 34 1 4.9053 9.4903 -0.6022 35 1 6.9221 9.6602 -2.0046 36 1 8.2095 7.6360 -2.5601 37 1 7.4837 5.4428 -1.7078 38 1 0.2125 2.3181 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225342757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:51 Heat of formation + Delta-G solvation = -23.460246 kcal Electronic energy + Delta-G solvation = -24090.300262 eV Core-core repulsion = 20503.687543 eV Total energy + Delta-G solvation = -3586.612719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.84228 -38.69711 -37.75574 -36.04437 -35.33336 -32.94493 -30.86570 -30.38036 -29.89974 -28.64114 -27.26207 -26.54068 -23.40135 -22.30171 -21.74405 -21.25683 -20.06195 -18.05187 -17.30951 -16.39504 -16.05929 -15.64288 -15.49573 -15.00586 -14.54944 -14.30022 -13.97197 -13.78139 -13.64122 -13.31230 -12.84766 -12.68784 -12.41299 -12.28195 -11.83266 -11.72813 -11.65842 -11.42603 -11.34306 -11.03556 -10.72474 -10.57414 -10.49006 -10.22807 -10.14511 -10.02726 -9.48495 -9.24766 -8.70036 -8.38684 -7.97640 -7.65288 -6.93630 -6.17853 -4.39249 1.63447 2.04512 2.29480 2.40925 2.82063 3.20852 3.28559 3.29988 3.56680 4.20954 4.26549 4.36092 4.81216 5.11190 5.13773 5.23055 5.23947 5.49890 5.50763 5.66011 5.68260 5.77489 5.86486 6.08351 6.10057 6.21549 6.30647 6.44538 6.49965 6.54754 6.66353 6.87215 6.94772 7.06264 7.16084 7.33796 7.50987 7.64129 7.68369 7.78949 7.83936 8.04382 8.42693 8.80841 9.34249 10.78417 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.004917 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.569640 B = 5693.413741 C = 6408.440122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.067 3.933 4 C -0.108 4.108 5 C -0.157 4.157 6 C 0.161 3.839 7 O -0.270 6.270 8 C 0.239 3.761 9 H 0.034 0.966 10 C -0.559 4.559 11 H 0.068 0.932 12 C 0.090 3.910 13 N -0.831 5.831 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.272 1.272 18 C -0.034 4.034 19 C -0.068 4.068 20 C -0.141 4.141 21 C -0.146 4.146 22 C -0.139 4.139 23 C -0.126 4.126 24 C -0.055 4.055 25 Cl -0.066 7.066 26 C -0.165 4.165 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.128 0.872 31 H 0.150 0.850 32 H 0.265 0.735 33 H 0.151 0.849 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.921 -4.782 -5.398 8.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.022 3.978 4 C -0.126 4.126 5 C -0.176 4.176 6 C 0.111 3.889 7 O -0.181 6.181 8 C 0.185 3.815 9 H 0.051 0.949 10 C -0.596 4.596 11 H 0.086 0.914 12 C -0.120 4.120 13 N -0.464 5.464 14 Si 0.716 3.284 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.035 4.035 19 C -0.086 4.086 20 C -0.159 4.159 21 C -0.165 4.165 22 C -0.157 4.157 23 C -0.144 4.144 24 C -0.082 4.082 25 Cl -0.038 7.038 26 C -0.185 4.185 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.168 0.832 32 H 0.075 0.925 33 H 0.168 0.832 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.100 -4.469 -5.276 8.592 hybrid contribution 0.482 0.236 1.154 1.273 sum -4.617 -4.233 -4.122 7.498 Atomic orbital electron populations 1.22941 0.79368 1.03162 1.01127 1.86032 1.20539 1.26833 1.90141 1.18524 0.91983 0.83390 1.03868 1.20265 0.90980 0.98194 1.03209 1.21262 1.01339 0.90376 1.04593 1.18661 0.89823 0.87314 0.93132 1.86359 1.24645 1.23132 1.83925 1.18992 0.76532 0.90541 0.95450 0.94850 1.21274 1.27478 1.17509 0.93295 0.91398 1.24952 0.93945 0.94397 0.98703 1.69984 1.24388 1.21481 1.30527 0.86646 0.80318 0.78768 0.82712 1.20347 1.21012 1.19654 1.19893 0.94336 0.96200 0.93053 1.21510 1.00878 0.90577 0.95612 1.21143 0.97379 0.97893 0.99533 1.20858 0.97031 0.97438 1.01127 1.20780 0.99928 0.92969 1.02014 1.20748 0.97405 0.97096 0.99138 1.19839 0.89289 0.87438 1.11663 1.98323 1.71747 1.36579 1.97108 1.20702 0.99642 0.90192 1.07951 0.88843 0.93005 0.93042 0.85445 0.83216 0.92514 0.83184 0.87646 0.87857 0.87553 0.87270 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.75 10.50 -19.67 -0.21 -4.96 16 3 C 0.07 1.11 6.69 -39.24 -0.26 0.85 16 4 C -0.11 -1.85 9.98 -39.44 -0.39 -2.24 16 5 C -0.16 -3.03 8.63 -39.46 -0.34 -3.37 16 6 C 0.16 3.43 6.57 -39.22 -0.26 3.17 16 7 O -0.27 -6.30 7.08 -19.76 -0.14 -6.44 16 8 C 0.24 5.49 2.10 -29.03 -0.06 5.43 16 9 H 0.03 0.72 6.50 -51.93 -0.34 0.38 16 10 C -0.56 -13.85 7.61 -34.44 -0.26 -14.11 16 11 H 0.07 1.66 7.83 -52.49 -0.41 1.25 16 12 C 0.09 2.28 5.22 -17.82 -0.09 2.18 16 13 N -0.83 -21.56 9.56 55.43 0.53 -21.03 16 14 Si 0.89 20.21 29.55 -169.99 -5.02 15.19 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 18 C -0.03 -0.77 4.83 -104.62 -0.51 -1.27 16 19 C -0.07 -1.52 8.12 -39.58 -0.32 -1.84 16 20 C -0.14 -2.79 10.05 -39.58 -0.40 -3.19 16 21 C -0.15 -2.64 10.05 -39.58 -0.40 -3.04 16 22 C -0.14 -2.51 10.05 -39.58 -0.40 -2.90 16 23 C -0.13 -2.51 9.70 -39.58 -0.38 -2.89 16 24 C -0.05 -1.07 6.33 -39.38 -0.25 -1.32 16 25 Cl -0.07 -1.25 28.50 -51.86 -1.48 -2.73 16 26 C -0.17 -2.79 8.82 -39.42 -0.35 -3.13 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 29 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 30 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.15 2.90 5.61 -52.49 -0.29 2.60 16 32 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.15 3.70 5.97 -52.49 -0.31 3.39 16 34 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.13 1.86 6.29 -52.49 -0.33 1.53 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -27.23 335.32 -9.10 -36.33 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.15 Total: 4.97 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -3.68 Total: -26.38 kcal Atomic # 7 Polarization: -21.56 SS G_CDS: 0.53 Total: -21.03 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.35 Total: -11.40 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.48 Total: -2.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.23 -9.10 -36.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225342757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.867 kcal (2) G-P(sol) polarization free energy of solvation -27.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds