Wall clock time and date at job start Tue Mar 31 2020 12:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35977 * 116.99939 * 2 1 4 4 C 1.38715 * 119.99464 * 179.97438 * 3 2 1 5 5 C 1.38131 * 120.02175 * 180.02562 * 4 3 2 6 6 C 1.38672 * 120.01257 * 0.02562 * 5 4 3 7 7 O 1.36007 * 120.00562 * 179.97438 * 6 5 4 8 8 C 1.42908 * 117.00024 * 7.09902 * 7 6 5 9 9 H 1.09001 * 109.46578 * 37.44302 * 8 7 6 10 10 C 1.50698 * 109.46912 * 277.44505 * 8 7 6 11 11 H 1.08001 * 119.99838 * 125.60017 * 10 8 7 12 12 C 1.37884 * 120.00057 * 305.60067 * 10 8 7 13 13 N 1.31517 * 119.99731 * 9.54659 * 12 10 8 14 14 Si 1.86803 * 119.99785 * 189.54637 * 12 10 8 15 15 H 1.48494 * 109.46884 * 90.00018 * 14 12 10 16 16 H 1.48499 * 109.46612 * 210.00157 * 14 12 10 17 17 H 1.48501 * 109.47292 * 330.00048 * 14 12 10 18 18 C 1.50703 * 109.47140 * 157.44409 * 8 7 6 19 19 C 1.38236 * 119.99821 * 29.72459 * 18 8 7 20 20 C 1.38236 * 119.99506 * 179.97438 * 19 18 8 21 21 C 1.38236 * 120.00092 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00248 * 0.07025 * 21 20 19 23 23 C 1.38230 * 119.99783 * 209.69916 * 18 8 7 24 24 C 1.38781 * 119.99552 * 0.25403 * 6 5 4 25 25 Cl 1.73594 * 120.01638 * 179.74771 * 24 6 5 26 26 C 1.38245 * 119.97395 * 359.48898 * 24 6 5 27 27 H 1.08997 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46980 * 300.00076 * 1 2 3 29 29 H 1.09001 * 109.46853 * 59.99630 * 1 2 3 30 30 H 1.08002 * 119.98551 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.99452 * 179.97438 * 5 4 3 32 32 H 0.96995 * 119.99409 * 179.97438 * 13 12 10 33 33 H 1.08000 * 120.00557 * 359.96898 * 19 18 8 34 34 H 1.08007 * 119.99495 * 179.71637 * 20 19 18 35 35 H 1.08000 * 119.99450 * 179.97438 * 21 20 19 36 36 H 1.07994 * 120.00009 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.00053 * 359.97438 * 23 18 8 38 38 H 1.08002 * 120.00854 * 180.27857 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4316 1.2841 0.0005 5 6 4.0593 2.5145 0.0011 6 6 3.3048 3.6780 0.0016 7 8 3.9230 4.8895 0.0027 8 6 5.3434 4.8932 -0.1542 9 1 5.6329 4.1151 -0.8604 10 6 5.9966 4.6306 1.1783 11 1 6.7076 3.8243 1.2815 12 6 5.6864 5.4198 2.2656 13 7 4.6901 6.2753 2.1942 14 14 6.6813 5.2736 3.8398 15 1 7.8244 6.2203 3.7926 16 1 5.8174 5.5982 5.0032 17 1 7.1930 3.8861 3.9751 18 6 5.7877 6.2355 -0.6756 19 6 5.0648 7.3718 -0.3640 20 6 5.4727 8.6031 -0.8419 21 6 6.6038 8.6982 -1.6310 22 6 7.3262 7.5618 -1.9433 23 6 6.9185 6.3305 -1.4651 24 6 1.9189 3.6062 0.0069 25 17 0.9739 5.0624 0.0142 26 6 1.2910 2.3746 0.0010 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 4.0195 0.3781 0.0005 31 1 5.1378 2.5704 0.0019 32 1 4.4717 6.8302 2.9593 33 1 4.1813 7.2977 0.2527 34 1 4.9053 9.4903 -0.6022 35 1 6.9221 9.6602 -2.0046 36 1 8.2095 7.6360 -2.5601 37 1 7.4837 5.4428 -1.7078 38 1 0.2125 2.3181 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225342757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:50 Heat of formation + Delta-G solvation = -35.616402 kcal Electronic energy + Delta-G solvation = -24090.827393 eV Core-core repulsion = 20503.687543 eV Total energy + Delta-G solvation = -3587.139850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22955 -40.16913 -39.18949 -37.53863 -36.77211 -34.74241 -32.49179 -31.79412 -31.42513 -29.96388 -28.84335 -27.77395 -25.11952 -23.72153 -23.24197 -22.70460 -21.62485 -19.49406 -18.83703 -17.85252 -17.68064 -17.04212 -16.81947 -16.56345 -16.00465 -15.70249 -15.55042 -15.37832 -15.06844 -14.71631 -14.33522 -14.13900 -13.92502 -13.71994 -13.40150 -13.20394 -13.11653 -12.83664 -12.75049 -12.67238 -12.39760 -12.20328 -11.88183 -11.75563 -11.70155 -11.47768 -11.13382 -10.86659 -10.56785 -9.81237 -9.51041 -9.24282 -8.44092 -8.03703 -6.31300 0.20601 0.60314 0.75549 0.87974 1.34174 1.38360 1.41863 1.47720 2.38975 2.44584 2.76530 2.80128 3.22537 3.27221 3.89215 4.07888 4.22645 4.27832 4.33477 4.40267 4.45424 4.47408 4.57224 4.65272 4.74002 4.76134 4.79333 4.99247 5.01192 5.10883 5.16685 5.37542 5.48844 5.54956 5.63420 5.72874 5.82375 5.95358 6.01523 6.21786 6.45037 6.46605 6.60818 7.09892 7.44383 8.87986 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.004917 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.569640 B = 5693.413741 C = 6408.440122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.078 3.922 4 C -0.108 4.108 5 C -0.164 4.164 6 C 0.122 3.878 7 O -0.287 6.287 8 C 0.240 3.760 9 H 0.036 0.964 10 C -0.566 4.566 11 H 0.063 0.937 12 C 0.052 3.948 13 N -0.849 5.849 14 Si 0.936 3.064 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.269 1.269 18 C -0.061 4.061 19 C -0.090 4.090 20 C -0.150 4.150 21 C -0.140 4.140 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.068 4.068 25 Cl -0.069 7.069 26 C -0.160 4.160 27 H 0.124 0.876 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.151 0.849 31 H 0.142 0.858 32 H 0.259 0.741 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.123 0.877 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 -5.472 -6.254 9.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.033 3.967 4 C -0.127 4.127 5 C -0.183 4.183 6 C 0.073 3.927 7 O -0.200 6.200 8 C 0.185 3.815 9 H 0.053 0.947 10 C -0.603 4.603 11 H 0.081 0.919 12 C -0.155 4.155 13 N -0.483 5.483 14 Si 0.762 3.238 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.193 1.193 18 C -0.061 4.061 19 C -0.109 4.109 20 C -0.168 4.168 21 C -0.158 4.158 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.095 4.095 25 Cl -0.040 7.040 26 C -0.180 4.180 27 H 0.142 0.858 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.169 0.831 31 H 0.160 0.840 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.141 0.859 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.921 -5.179 -6.137 9.418 hybrid contribution 0.323 0.335 1.335 1.413 sum -4.598 -4.844 -4.802 8.226 Atomic orbital electron populations 1.23326 0.76868 1.05585 1.01952 1.86043 1.23060 1.25447 1.89620 1.18599 0.91966 0.84146 1.01995 1.20493 0.91783 0.98121 1.02287 1.21238 1.01005 0.90851 1.05229 1.19049 0.90842 0.87332 0.95459 1.86310 1.24402 1.24308 1.84936 1.18939 0.76594 0.91257 0.94676 0.94652 1.21456 1.27217 1.17174 0.94451 0.91924 1.25494 0.94713 0.94555 1.00775 1.70136 1.25412 1.22192 1.30557 0.85915 0.79068 0.78598 0.80214 1.20472 1.21377 1.19311 1.20021 0.95641 0.95794 0.94676 1.21320 1.00668 0.92116 0.96781 1.21380 0.98405 0.97358 0.99666 1.21281 0.95717 0.99210 0.99607 1.21229 1.00671 0.91965 1.01210 1.21025 0.96778 0.98825 0.98895 1.20070 0.88906 0.88336 1.12216 1.98311 1.71514 1.37017 1.97170 1.20958 1.01051 0.89170 1.06787 0.85797 0.92385 0.91933 0.83113 0.84007 0.93159 0.86237 0.86033 0.84089 0.83764 0.85922 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -8.79 10.50 -93.29 -0.98 -9.77 16 3 C 0.08 2.47 6.69 22.49 0.15 2.62 16 4 C -0.11 -3.63 9.98 22.36 0.22 -3.40 16 5 C -0.16 -6.49 8.63 22.35 0.19 -6.30 16 6 C 0.12 5.37 6.57 22.50 0.15 5.52 16 7 O -0.29 -14.07 7.08 -93.63 -0.66 -14.73 16 8 C 0.24 11.45 2.10 29.10 0.06 11.51 16 9 H 0.04 1.60 6.50 -2.39 -0.02 1.59 16 10 C -0.57 -28.90 7.61 25.60 0.19 -28.71 16 11 H 0.06 3.15 7.83 -2.91 -0.02 3.12 16 12 C 0.05 2.69 5.22 84.66 0.44 3.13 16 13 N -0.85 -45.82 9.56 21.45 0.21 -45.61 16 14 Si 0.94 42.26 29.55 68.60 2.03 44.29 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 18 C -0.06 -2.79 4.83 -19.87 -0.10 -2.89 16 19 C -0.09 -4.19 8.12 22.27 0.18 -4.01 16 20 C -0.15 -5.85 10.05 22.27 0.22 -5.62 16 21 C -0.14 -4.69 10.05 22.27 0.22 -4.46 16 22 C -0.13 -4.45 10.05 22.27 0.22 -4.22 16 23 C -0.14 -5.38 9.70 22.27 0.22 -5.17 16 24 C -0.07 -2.67 6.33 22.40 0.14 -2.53 16 25 Cl -0.07 -2.65 28.50 -2.72 -0.08 -2.72 16 26 C -0.16 -5.21 8.82 22.38 0.20 -5.02 16 27 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 29 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 30 H 0.15 4.24 8.06 -2.91 -0.02 4.21 16 31 H 0.14 5.71 5.61 -2.91 -0.02 5.69 16 32 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 33 H 0.12 6.25 5.97 -2.91 -0.02 6.23 16 34 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 36 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.16 4.13 6.29 -2.91 -0.02 4.11 16 Total: -1.00 -60.40 335.32 5.43 -54.96 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 1.09 Total: 21.72 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 3.84 Total: -48.13 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.21 Total: -45.61 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -1.64 Total: -24.51 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -0.08 Total: -2.72 kcal Total: -60.40 5.43 -54.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225342757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.345 kcal (2) G-P(sol) polarization free energy of solvation -60.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds