Wall clock time and date at job start Tue Mar 31 2020 12:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99972 * 2 1 4 4 H 1.48496 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46928 * 299.99920 * 3 2 1 6 6 H 1.48492 * 109.47327 * 59.99907 * 3 2 1 7 7 C 1.38805 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00491 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.47020 * 125.65092 * 0.02562 * 9 7 2 11 11 C 1.54318 * 107.27596 * 178.89520 * 10 9 7 12 12 C 1.55160 * 102.94133 * 337.80937 * 11 10 9 13 13 H 1.09000 * 111.00827 * 277.38947 * 12 11 10 14 14 O 1.42905 * 111.00478 * 153.57167 * 12 11 10 15 15 C 1.35586 * 116.99876 * 156.24862 * 14 12 11 16 16 C 1.38261 * 121.01874 * 5.69941 * 15 14 12 17 17 C 1.39099 * 119.70626 * 180.02562 * 16 15 14 18 18 Cl 1.73606 * 119.09983 * 179.97438 * 17 16 15 19 19 N 1.31333 * 121.79817 * 359.97438 * 17 16 15 20 20 C 1.33778 * 121.60606 * 0.02562 * 19 17 16 21 21 C 1.40564 * 120.97785 * 179.97438 * 20 19 17 22 22 C 1.36116 * 119.75751 * 180.02562 * 21 20 19 23 23 C 1.39285 * 121.04056 * 359.95333 * 22 21 20 24 24 C 1.36227 * 120.82829 * 0.02562 * 23 22 21 25 25 C 1.40239 * 119.62745 * 0.02562 * 24 23 22 26 26 C 1.47426 * 125.64754 * 179.97438 * 9 7 2 27 27 H 0.97002 * 120.00300 * 359.97438 * 1 2 3 28 28 H 1.09010 * 109.87844 * 59.48098 * 10 9 7 29 29 H 1.08999 * 110.01445 * 298.38873 * 10 9 7 30 30 H 1.08994 * 110.72385 * 219.44867 * 11 10 9 31 31 H 1.08997 * 110.71895 * 96.16847 * 11 10 9 32 32 H 1.07999 * 120.14715 * 359.95236 * 16 15 14 33 33 H 1.07995 * 120.11812 * 0.02562 * 21 20 19 34 34 H 1.08002 * 119.48160 * 179.97438 * 22 21 20 35 35 H 1.08002 * 119.58926 * 180.29696 * 23 22 21 36 36 H 1.07997 * 120.19147 * 179.97438 * 24 23 22 37 37 H 1.09004 * 110.36581 * 85.33542 * 26 9 7 38 38 H 1.08997 * 110.36796 * 323.01476 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0440 -0.0289 12 6 0.8518 -4.6554 -0.6144 13 1 0.8565 -4.5950 -1.7027 14 8 1.0247 -6.0053 -0.1782 15 6 1.7920 -6.8095 -0.9546 16 6 2.4705 -6.3065 -2.0494 17 6 3.2496 -7.1564 -2.8275 18 17 4.0942 -6.5083 -4.1989 19 7 3.3638 -8.4356 -2.5531 20 6 2.7349 -8.9877 -1.5094 21 6 2.8660 -10.3586 -1.2282 22 6 2.2144 -10.8945 -0.1600 23 6 1.4166 -10.1049 0.6647 24 6 1.2665 -8.7727 0.4230 25 6 1.9228 -8.1881 -0.6698 26 6 1.9334 -3.7311 -0.0016 27 1 -0.4851 0.8400 0.0004 28 1 -0.5576 -2.0512 -0.8837 29 1 -0.5567 -2.0849 0.9005 30 1 -1.2985 -4.2507 -0.6791 31 1 -0.6316 -4.4190 0.9780 32 1 2.3948 -5.2587 -2.2999 33 1 3.4814 -10.9845 -1.8574 34 1 2.3180 -11.9485 0.0517 35 1 0.9140 -10.5536 1.5088 36 1 0.6451 -8.1702 1.0689 37 1 2.1663 -4.0429 1.0166 38 1 2.8330 -3.7399 -0.6170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226884075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:29 Heat of formation + Delta-G solvation = 41.170634 kcal Electronic energy + Delta-G solvation = -23575.781808 eV Core-core repulsion = 20024.264445 eV Total energy + Delta-G solvation = -3551.517363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24412 -39.23460 -37.50866 -36.67341 -36.18985 -32.93012 -32.10901 -30.67824 -29.95165 -29.34358 -27.60185 -24.89508 -24.10728 -23.78057 -22.16930 -20.69731 -20.30402 -18.71570 -17.95837 -17.80764 -16.95024 -15.88076 -15.47930 -15.22648 -14.78638 -14.73909 -14.41136 -14.26488 -14.12777 -13.82813 -13.52394 -12.86506 -12.72339 -12.49262 -12.21098 -11.96804 -11.76849 -11.43566 -11.29937 -11.13322 -11.05264 -10.91190 -10.73847 -10.47979 -10.14587 -10.07036 -9.86861 -9.81375 -9.61677 -8.93712 -8.72463 -8.11244 -6.99924 -5.83299 -3.18577 0.25481 0.52635 1.67367 1.80995 2.66066 2.88881 3.34485 3.40650 3.42782 3.86304 4.19968 4.38869 4.44626 4.54282 4.71177 4.86728 4.94338 5.07433 5.09928 5.16918 5.29510 5.40355 5.43042 5.48030 5.54947 5.77603 5.82694 5.95481 6.09827 6.11083 6.20577 6.26493 6.28122 6.39599 6.47730 6.58941 7.23293 7.41212 7.42080 7.59132 7.69066 8.10478 9.08327 9.67724 10.30513 11.28515 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.003501 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.324498 B = 7994.866177 C = 9264.266997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.135 4.135 12 C 0.057 3.943 13 H 0.088 0.912 14 O -0.285 6.285 15 C 0.221 3.779 16 C -0.275 4.275 17 C 0.252 3.748 18 Cl -0.027 7.027 19 N -0.505 5.505 20 C 0.175 3.825 21 C -0.106 4.106 22 C -0.085 4.085 23 C -0.135 4.135 24 C -0.064 4.064 25 C -0.128 4.128 26 C 0.121 3.879 27 H 0.254 0.746 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.157 0.843 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.032 0.968 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.893 -19.784 -1.978 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.360 4.360 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.053 3.947 11 C -0.173 4.173 12 C 0.001 3.999 13 H 0.106 0.894 14 O -0.194 6.194 15 C 0.165 3.835 16 C -0.297 4.297 17 C 0.075 3.925 18 Cl 0.001 6.999 19 N -0.220 5.220 20 C 0.054 3.946 21 C -0.125 4.125 22 C -0.104 4.104 23 C -0.154 4.154 24 C -0.083 4.083 25 C -0.131 4.131 26 C -0.006 4.006 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.175 0.825 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.050 0.950 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.277 -20.092 -2.359 20.358 hybrid contribution 0.103 1.695 0.166 1.706 sum 2.379 -18.397 -2.194 18.680 Atomic orbital electron populations 1.69938 1.04934 1.25247 1.56715 1.24821 0.95772 0.97800 1.01760 0.86004 0.78776 0.83407 0.77323 1.20385 1.21605 1.21614 1.19106 0.90573 0.81980 1.44383 0.90132 1.44330 1.01604 0.99469 1.87453 1.21228 0.84484 0.86955 1.02008 1.23080 0.94273 0.98992 1.00949 1.24191 0.99665 0.76485 0.99545 0.89392 1.86058 1.62629 1.23621 1.47070 1.19191 0.87040 0.89481 0.87757 1.21820 1.05474 1.02966 0.99434 1.21382 0.91891 0.89609 0.89649 1.98416 1.76232 1.83987 1.41217 1.67333 1.24333 1.11433 1.18923 1.18441 0.92520 0.94027 0.89609 1.20693 1.01161 0.92114 0.98556 1.20946 0.95293 1.00275 0.93936 1.20907 1.00131 0.93821 1.00497 1.20983 0.96949 0.95299 0.95046 1.18348 1.03623 0.90918 1.00168 1.21909 0.94030 0.86544 0.98114 0.93581 0.92861 0.92990 0.91086 0.90896 0.82534 0.84398 0.85126 0.85281 0.84445 0.95030 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 10.31 55.49 0.57 -25.54 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.29 10.28 -15.06 -0.15 -6.45 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.60 -14.77 3.39 -170.07 -0.58 -15.35 16 10 C 0.18 4.08 5.37 -3.07 -0.02 4.06 16 11 C -0.13 -2.37 6.69 -24.90 -0.17 -2.53 16 12 C 0.06 0.97 2.82 -24.58 -0.07 0.90 16 13 H 0.09 1.44 6.30 -51.93 -0.33 1.11 16 14 O -0.29 -4.43 9.26 -18.45 -0.17 -4.60 16 15 C 0.22 3.29 6.73 -38.38 -0.26 3.03 16 16 C -0.27 -4.05 8.76 -39.25 -0.34 -4.39 16 17 C 0.25 3.68 7.26 -17.45 -0.13 3.56 16 18 Cl -0.03 -0.36 29.08 -51.86 -1.51 -1.87 16 19 N -0.50 -7.47 10.30 -8.18 -0.08 -7.55 16 20 C 0.18 2.39 6.60 -84.88 -0.56 1.83 16 21 C -0.11 -1.13 9.98 -39.47 -0.39 -1.52 16 22 C -0.08 -0.72 9.94 -39.96 -0.40 -1.12 16 23 C -0.14 -1.22 9.96 -39.92 -0.40 -1.62 16 24 C -0.06 -0.73 9.58 -39.55 -0.38 -1.11 16 25 C -0.13 -1.75 5.75 -106.69 -0.61 -2.37 16 26 C 0.12 2.43 6.89 -2.53 -0.02 2.41 16 27 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.05 1.34 7.38 -51.92 -0.38 0.96 16 29 H 0.05 1.32 7.51 -51.93 -0.39 0.93 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.16 2.29 5.82 -52.49 -0.31 1.99 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.14 1.47 7.67 -52.49 -0.40 1.07 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.90 7.85 -51.93 -0.41 0.49 16 LS Contribution 332.56 15.07 5.01 5.01 Total: -1.00 -29.66 332.56 -10.07 -39.72 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.30 Total: -0.84 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -3.99 Total: -5.55 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.09 Total: -48.44 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.17 Total: -4.60 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.66 -10.07 -39.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226884075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.896 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds