Wall clock time and date at job start Tue Mar 31 2020 12:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99972 * 2 1 4 4 H 1.48496 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46928 * 299.99920 * 3 2 1 6 6 H 1.48492 * 109.47327 * 59.99907 * 3 2 1 7 7 C 1.38805 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00491 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.47020 * 125.65092 * 0.02562 * 9 7 2 11 11 C 1.54318 * 107.27596 * 178.89520 * 10 9 7 12 12 C 1.55160 * 102.94133 * 337.80937 * 11 10 9 13 13 H 1.09000 * 111.00827 * 277.38947 * 12 11 10 14 14 O 1.42905 * 111.00478 * 153.57167 * 12 11 10 15 15 C 1.35586 * 116.99876 * 156.24862 * 14 12 11 16 16 C 1.38261 * 121.01874 * 5.69941 * 15 14 12 17 17 C 1.39099 * 119.70626 * 180.02562 * 16 15 14 18 18 Cl 1.73606 * 119.09983 * 179.97438 * 17 16 15 19 19 N 1.31333 * 121.79817 * 359.97438 * 17 16 15 20 20 C 1.33778 * 121.60606 * 0.02562 * 19 17 16 21 21 C 1.40564 * 120.97785 * 179.97438 * 20 19 17 22 22 C 1.36116 * 119.75751 * 180.02562 * 21 20 19 23 23 C 1.39285 * 121.04056 * 359.95333 * 22 21 20 24 24 C 1.36227 * 120.82829 * 0.02562 * 23 22 21 25 25 C 1.40239 * 119.62745 * 0.02562 * 24 23 22 26 26 C 1.47426 * 125.64754 * 179.97438 * 9 7 2 27 27 H 0.97002 * 120.00300 * 359.97438 * 1 2 3 28 28 H 1.09010 * 109.87844 * 59.48098 * 10 9 7 29 29 H 1.08999 * 110.01445 * 298.38873 * 10 9 7 30 30 H 1.08994 * 110.72385 * 219.44867 * 11 10 9 31 31 H 1.08997 * 110.71895 * 96.16847 * 11 10 9 32 32 H 1.07999 * 120.14715 * 359.95236 * 16 15 14 33 33 H 1.07995 * 120.11812 * 0.02562 * 21 20 19 34 34 H 1.08002 * 119.48160 * 179.97438 * 22 21 20 35 35 H 1.08002 * 119.58926 * 180.29696 * 23 22 21 36 36 H 1.07997 * 120.19147 * 179.97438 * 24 23 22 37 37 H 1.09004 * 110.36581 * 85.33542 * 26 9 7 38 38 H 1.08997 * 110.36796 * 323.01476 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0440 -0.0289 12 6 0.8518 -4.6554 -0.6144 13 1 0.8565 -4.5950 -1.7027 14 8 1.0247 -6.0053 -0.1782 15 6 1.7920 -6.8095 -0.9546 16 6 2.4705 -6.3065 -2.0494 17 6 3.2496 -7.1564 -2.8275 18 17 4.0942 -6.5083 -4.1989 19 7 3.3638 -8.4356 -2.5531 20 6 2.7349 -8.9877 -1.5094 21 6 2.8660 -10.3586 -1.2282 22 6 2.2144 -10.8945 -0.1600 23 6 1.4166 -10.1049 0.6647 24 6 1.2665 -8.7727 0.4230 25 6 1.9228 -8.1881 -0.6698 26 6 1.9334 -3.7311 -0.0016 27 1 -0.4851 0.8400 0.0004 28 1 -0.5576 -2.0512 -0.8837 29 1 -0.5567 -2.0849 0.9005 30 1 -1.2985 -4.2507 -0.6791 31 1 -0.6316 -4.4190 0.9780 32 1 2.3948 -5.2587 -2.2999 33 1 3.4814 -10.9845 -1.8574 34 1 2.3180 -11.9485 0.0517 35 1 0.9140 -10.5536 1.5088 36 1 0.6451 -8.1702 1.0689 37 1 2.1663 -4.0429 1.0166 38 1 2.8330 -3.7399 -0.6170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226884075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:28 Heat of formation + Delta-G solvation = 24.961738 kcal Electronic energy + Delta-G solvation = -23576.484678 eV Core-core repulsion = 20024.264445 eV Total energy + Delta-G solvation = -3552.220233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -42.28077 -40.46502 -38.48459 -38.23263 -37.22040 -34.52229 -33.46160 -31.64616 -31.25107 -30.74179 -29.21943 -26.68194 -25.16649 -24.83373 -23.21110 -22.14208 -22.01374 -19.77530 -19.21179 -18.98091 -18.45498 -17.13047 -16.73966 -16.65680 -16.17485 -15.96860 -15.58553 -15.33155 -15.23221 -15.14460 -14.89079 -14.32607 -13.98444 -13.89804 -13.63034 -13.37512 -12.96064 -12.78741 -12.62345 -12.42034 -12.33637 -12.21393 -12.14096 -12.06737 -12.00938 -11.79004 -11.61655 -10.87677 -10.76910 -10.73425 -9.87224 -9.07842 -8.99154 -7.90450 -5.27704 -0.70372 -0.42962 0.61948 0.86595 1.46170 1.46585 1.56686 1.65580 1.76321 2.46780 2.94006 3.23198 3.29295 3.39536 3.49350 3.57083 3.64050 3.81680 3.86845 3.97007 4.00432 4.16487 4.33214 4.41752 4.50233 4.52691 4.61117 4.75547 4.85279 4.91791 4.92839 5.02077 5.20701 5.34665 5.39927 5.47438 5.55309 5.67932 5.82070 5.98525 6.13794 6.56301 7.03903 7.67852 8.30326 9.19911 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.003501 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.324498 B = 7994.866177 C = 9264.266997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.082 0.918 9 N -0.622 5.622 10 C 0.185 3.815 11 C -0.119 4.119 12 C 0.077 3.923 13 H 0.095 0.905 14 O -0.282 6.282 15 C 0.207 3.793 16 C -0.281 4.281 17 C 0.237 3.763 18 Cl -0.023 7.023 19 N -0.513 5.513 20 C 0.151 3.849 21 C -0.116 4.116 22 C -0.068 4.068 23 C -0.117 4.117 24 C -0.085 4.085 25 C -0.139 4.139 26 C 0.119 3.881 27 H 0.250 0.750 28 H 0.024 0.976 29 H 0.019 0.981 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.172 0.828 35 H 0.164 0.836 36 H 0.141 0.859 37 H 0.030 0.970 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 -22.612 -1.336 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.252 4.252 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.100 0.900 9 N -0.350 5.350 10 C 0.060 3.940 11 C -0.157 4.157 12 C 0.020 3.980 13 H 0.113 0.887 14 O -0.191 6.191 15 C 0.151 3.849 16 C -0.303 4.303 17 C 0.060 3.940 18 Cl 0.006 6.994 19 N -0.228 5.228 20 C 0.030 3.970 21 C -0.135 4.135 22 C -0.088 4.088 23 C -0.134 4.134 24 C -0.104 4.104 25 C -0.141 4.141 26 C -0.007 4.007 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.190 0.810 35 H 0.182 0.818 36 H 0.159 0.841 37 H 0.047 0.953 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.575 -22.967 -1.718 23.175 hybrid contribution 0.055 2.355 0.030 2.356 sum 2.630 -20.612 -1.688 20.848 Atomic orbital electron populations 1.70138 1.06176 1.25521 1.57743 1.25626 0.96657 1.00903 1.02062 0.85012 0.78151 0.79325 0.76830 1.19162 1.21689 1.21763 1.19451 0.91025 0.83329 1.43751 0.89983 1.44586 1.02531 1.00505 1.87342 1.20974 0.83629 0.90393 0.99006 1.22888 0.95417 0.94933 1.02509 1.23776 0.97691 0.76981 0.99537 0.88718 1.86032 1.63212 1.22574 1.47280 1.19360 0.87444 0.90077 0.87981 1.21782 1.05981 1.02746 0.99826 1.21432 0.92608 0.89810 0.90199 1.98406 1.76129 1.83978 1.40917 1.67349 1.24549 1.11404 1.19544 1.18901 0.93018 0.95404 0.89627 1.20999 1.01874 0.90911 0.99686 1.21435 0.93074 1.02143 0.92122 1.21381 0.98591 0.92739 1.00708 1.21155 0.97695 0.96689 0.94848 1.18550 1.04129 0.90322 1.01111 1.21990 0.95095 0.85375 0.98228 0.94107 0.95766 0.96275 0.88440 0.89664 0.83056 0.83002 0.81024 0.81809 0.84115 0.95263 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.42 10.31 21.65 0.22 -55.19 16 2 C -0.06 -3.29 5.49 84.86 0.47 -2.83 16 3 Si 0.98 45.06 29.55 68.60 2.03 47.09 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.25 -13.65 10.28 84.03 0.86 -12.78 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.62 -31.31 3.39 -691.98 -2.35 -33.66 16 10 C 0.18 8.74 5.37 86.73 0.47 9.20 16 11 C -0.12 -4.12 6.69 31.78 0.21 -3.91 16 12 C 0.08 2.57 2.82 31.99 0.09 2.66 16 13 H 0.10 3.07 6.30 -2.39 -0.02 3.06 16 14 O -0.28 -8.52 9.26 -88.95 -0.82 -9.35 16 15 C 0.21 6.04 6.73 23.05 0.16 6.20 16 16 C -0.28 -8.34 8.76 22.48 0.20 -8.14 16 17 C 0.24 6.95 7.26 84.97 0.62 7.57 16 18 Cl -0.02 -0.61 29.08 -2.72 -0.08 -0.68 16 19 N -0.51 -14.92 10.30 -179.81 -1.85 -16.77 16 20 C 0.15 3.92 6.60 40.23 0.27 4.18 16 21 C -0.12 -2.13 9.98 22.34 0.22 -1.91 16 22 C -0.07 -0.85 9.94 22.03 0.22 -0.63 16 23 C -0.12 -1.59 9.96 22.05 0.22 -1.37 16 24 C -0.09 -1.73 9.58 22.29 0.21 -1.52 16 25 C -0.14 -3.63 5.75 -21.20 -0.12 -3.75 16 26 C 0.12 4.83 6.89 86.86 0.60 5.43 16 27 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.02 1.26 7.38 -2.38 -0.02 1.25 16 29 H 0.02 1.01 7.51 -2.39 -0.02 0.99 16 30 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.15 4.52 5.82 -2.91 -0.02 4.51 16 33 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.14 2.71 7.67 -2.91 -0.02 2.69 16 37 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.92 7.85 -2.39 -0.02 1.90 16 Total: -1.00 -66.23 332.56 2.92 -63.31 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.09 Total: 6.85 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 4.68 Total: -1.60 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -3.98 Total: -105.62 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.82 Total: -9.35 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.68 kcal Total: -66.23 2.92 -63.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226884075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.274 kcal (2) G-P(sol) polarization free energy of solvation -66.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds