Wall clock time and date at job start Tue Mar 31 2020 12:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35994 * 116.99699 * 2 1 4 4 C 1.38567 * 120.06746 * 0.24000 * 3 2 1 5 5 C 1.38342 * 119.98445 * 180.26961 * 4 3 2 6 6 Cl 1.73601 * 119.93717 * 179.76669 * 5 4 3 7 7 C 1.38353 * 120.12316 * 359.74583 * 5 4 3 8 8 C 1.38241 * 120.13224 * 359.97438 * 7 5 4 9 9 C 1.38554 * 120.01439 * 359.97438 * 8 7 5 10 10 O 1.36016 * 120.06365 * 179.97438 * 9 8 7 11 11 C 1.42900 * 116.99656 * 5.77547 * 10 9 8 12 12 H 1.08994 * 109.47287 * 35.36460 * 11 10 9 13 13 C 1.50701 * 109.46970 * 275.36266 * 11 10 9 14 14 H 1.07995 * 119.99902 * 334.72100 * 13 11 10 15 15 C 1.37872 * 119.99495 * 154.72499 * 13 11 10 16 16 N 1.31517 * 120.00048 * 174.66202 * 15 13 11 17 17 Si 1.86804 * 120.00475 * 354.65438 * 15 13 11 18 18 H 1.48497 * 109.46768 * 94.75535 * 17 15 13 19 19 H 1.48497 * 109.47073 * 214.75479 * 17 15 13 20 20 H 1.48496 * 109.46782 * 334.75816 * 17 15 13 21 21 C 1.50703 * 109.46817 * 155.36452 * 11 10 9 22 22 C 1.38234 * 119.99917 * 215.65346 * 21 11 10 23 23 C 1.38234 * 119.99799 * 179.97438 * 22 21 11 24 24 C 1.38229 * 120.00290 * 359.97438 * 23 22 21 25 25 C 1.38239 * 119.99927 * 0.06695 * 24 23 22 26 26 C 1.38234 * 120.00067 * 359.88957 * 25 24 23 27 27 H 1.08998 * 109.47704 * 59.99525 * 1 2 3 28 28 H 1.08999 * 109.46718 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47047 * 299.99366 * 1 2 3 30 30 H 1.07998 * 120.00847 * 0.04030 * 4 3 2 31 31 H 1.08002 * 119.93152 * 179.97438 * 7 5 4 32 32 H 1.07997 * 119.99379 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00525 * 180.02562 * 16 15 13 34 34 H 1.08002 * 120.00174 * 359.97162 * 22 21 11 35 35 H 1.08003 * 119.99426 * 179.71955 * 23 22 21 36 36 H 1.07997 * 120.00244 * 179.97438 * 24 23 22 37 37 H 1.08002 * 120.00029 * 179.97438 * 25 24 23 38 38 H 1.07994 * 119.99830 * 180.10849 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2930 2.3747 0.0050 5 6 1.9227 3.6065 -0.0006 6 17 0.9776 5.0627 -0.0004 7 6 3.3043 3.6799 -0.0060 8 6 4.0608 2.5229 -0.0052 9 6 3.4359 1.2863 0.0015 10 8 4.1792 0.1472 0.0018 11 6 5.5952 0.2967 0.1231 12 1 5.8168 1.1361 0.7821 13 6 6.1914 0.5544 -1.2367 14 1 5.6806 0.2111 -2.1241 15 6 7.3890 1.2285 -1.3477 16 7 7.9619 1.3619 -2.5240 17 14 8.1979 1.9525 0.1725 18 1 9.1909 0.9887 0.7113 19 1 8.8829 3.2199 -0.1873 20 1 7.1628 2.2242 1.2020 21 6 6.1858 -0.9642 0.6998 22 6 7.2620 -0.8909 1.5642 23 6 7.8034 -2.0474 2.0936 24 6 7.2682 -3.2772 1.7590 25 6 6.1925 -3.3506 0.8939 26 6 5.6505 -2.1940 0.3652 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2144 2.3196 0.0096 31 1 3.7927 4.6432 -0.0108 32 1 5.1391 2.5828 -0.0098 33 1 8.8047 1.8358 -2.6021 34 1 7.6799 0.0700 1.8259 35 1 8.6471 -1.9903 2.7653 36 1 7.6914 -4.1808 2.1722 37 1 5.7746 -4.3115 0.6321 38 1 4.8090 -2.2513 -0.3093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227370371.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:55 Heat of formation + Delta-G solvation = -38.315189 kcal Electronic energy + Delta-G solvation = -24049.882778 eV Core-core repulsion = 20462.625900 eV Total energy + Delta-G solvation = -3587.256878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60234 -40.30636 -39.11684 -38.27297 -36.95340 -35.10904 -33.04779 -31.76273 -31.43352 -30.59342 -29.14723 -28.04926 -25.21771 -23.64537 -23.53343 -23.09784 -21.68518 -19.69354 -19.34201 -18.32262 -18.04980 -17.29242 -16.91032 -16.62641 -16.27409 -16.05048 -15.91815 -15.34094 -15.20956 -14.98021 -14.80718 -14.32500 -14.22692 -14.16859 -13.71022 -13.47197 -13.38318 -13.03890 -12.71472 -12.54959 -12.41688 -12.29042 -12.01292 -11.95201 -11.85318 -11.73017 -11.44799 -11.25840 -10.88660 -9.77683 -9.75018 -9.50471 -8.74166 -8.45860 -6.53769 0.15203 0.26151 0.52500 0.58608 1.08959 1.20787 1.23116 1.31602 2.16166 2.33713 2.39810 2.57555 2.83454 3.06047 3.75351 3.97859 4.01131 4.05869 4.11191 4.18157 4.27410 4.30809 4.37569 4.42729 4.49189 4.65489 4.71186 4.75037 4.79694 4.82479 5.08871 5.12998 5.21762 5.24466 5.28838 5.52228 5.62041 5.66738 5.80580 5.96675 6.18963 6.25370 6.47925 6.70770 7.12706 8.70449 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.004986 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.984372 B = 5614.484485 C = 7065.983435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.092 3.908 4 C -0.158 4.158 5 C -0.043 4.043 6 Cl -0.057 7.057 7 C -0.108 4.108 8 C -0.167 4.167 9 C 0.102 3.898 10 O -0.313 6.313 11 C 0.216 3.784 12 H 0.050 0.950 13 C -0.531 4.531 14 H 0.035 0.965 15 C 0.039 3.961 16 N -0.926 5.926 17 Si 0.906 3.094 18 H -0.249 1.249 19 H -0.276 1.276 20 H -0.236 1.236 21 C -0.073 4.073 22 C -0.153 4.153 23 C -0.119 4.119 24 C -0.130 4.130 25 C -0.120 4.120 26 C -0.118 4.118 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.172 0.828 31 H 0.151 0.849 32 H 0.132 0.868 33 H 0.273 0.727 34 H 0.107 0.893 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 -0.654 10.409 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.046 3.954 4 C -0.177 4.177 5 C -0.069 4.069 6 Cl -0.028 7.028 7 C -0.127 4.127 8 C -0.186 4.186 9 C 0.056 3.944 10 O -0.227 6.227 11 C 0.161 3.839 12 H 0.067 0.933 13 C -0.568 4.568 14 H 0.053 0.947 15 C -0.162 4.162 16 N -0.564 5.564 17 Si 0.730 3.270 18 H -0.174 1.174 19 H -0.202 1.202 20 H -0.160 1.160 21 C -0.073 4.073 22 C -0.171 4.171 23 C -0.137 4.137 24 C -0.148 4.148 25 C -0.137 4.137 26 C -0.137 4.137 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.090 0.910 30 H 0.189 0.811 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.164 0.836 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.825 -0.858 10.279 14.953 hybrid contribution 0.610 0.933 -0.331 1.163 sum -10.215 0.075 9.948 14.259 Atomic orbital electron populations 1.23423 0.76285 1.05755 1.02495 1.86199 1.23530 1.25309 1.89044 1.18177 0.88496 0.85921 1.02785 1.20997 1.01323 0.88806 1.06615 1.20425 0.91325 0.87672 1.07525 1.98336 1.72054 1.35314 1.97113 1.20922 0.91897 0.98839 1.01055 1.21239 1.01100 0.91193 1.05105 1.18756 0.89179 0.86973 0.99534 1.86009 1.20596 1.28865 1.87224 1.19406 0.76005 0.93195 0.95289 0.93309 1.21210 1.07015 1.37266 0.91324 0.94673 1.25606 0.96607 0.95180 0.98804 1.70006 1.18533 1.42204 1.25615 0.86445 0.80553 0.79331 0.80698 1.17353 1.20206 1.16005 1.20165 0.96613 0.95621 0.94944 1.21059 0.97514 0.99566 0.98957 1.21356 1.00238 0.91966 1.00134 1.21437 0.96590 0.98282 0.98489 1.21449 0.96881 0.98086 0.97319 1.20974 1.00215 0.92469 1.00020 0.91549 0.86316 0.91042 0.81087 0.83168 0.85062 0.91777 0.87464 0.83364 0.82520 0.83561 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -10.96 10.28 -79.60 -0.82 -11.78 16 3 C 0.09 3.31 6.70 22.57 0.15 3.46 16 4 C -0.16 -4.56 8.82 22.37 0.20 -4.37 16 5 C -0.04 -1.26 6.32 22.32 0.14 -1.11 16 6 Cl -0.06 -1.37 28.95 -2.72 -0.08 -1.45 16 7 C -0.11 -3.61 9.82 22.30 0.22 -3.39 16 8 C -0.17 -6.84 8.70 22.35 0.19 -6.65 16 9 C 0.10 4.40 6.60 22.57 0.15 4.55 16 10 O -0.31 -15.11 8.74 -79.85 -0.70 -15.81 16 11 C 0.22 10.61 1.57 29.10 0.05 10.66 16 12 H 0.05 2.35 3.45 -2.39 -0.01 2.34 16 13 C -0.53 -30.36 8.23 25.60 0.21 -30.15 16 14 H 0.03 2.31 8.06 -2.91 -0.02 2.29 16 15 C 0.04 2.19 5.47 84.65 0.46 2.66 16 16 N -0.93 -56.12 13.96 21.45 0.30 -55.82 16 17 Si 0.91 41.09 23.48 68.60 1.61 42.70 16 18 H -0.25 -10.68 6.82 99.48 0.68 -10.00 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.24 -9.78 5.86 99.48 0.58 -9.20 16 21 C -0.07 -3.28 4.92 -19.86 -0.10 -3.38 16 22 C -0.15 -6.13 8.65 22.27 0.19 -5.94 16 23 C -0.12 -3.82 10.05 22.27 0.22 -3.59 16 24 C -0.13 -3.75 10.05 22.27 0.22 -3.53 16 25 C -0.12 -3.88 10.05 22.27 0.22 -3.66 16 26 C -0.12 -4.91 9.35 22.27 0.21 -4.71 16 27 H 0.07 1.15 7.67 -2.39 -0.02 1.13 16 28 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.15 7.65 -2.39 -0.02 1.13 16 30 H 0.17 3.65 6.30 -2.91 -0.02 3.63 16 31 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.13 5.86 4.92 -2.91 -0.01 5.84 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.11 4.23 4.88 -2.91 -0.01 4.21 16 35 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 37 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.11 4.65 7.65 -2.91 -0.02 4.63 16 Total: -1.00 -69.39 329.57 5.12 -64.27 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.95 Total: 25.63 kcal Atomic # 6 Polarization: -51.61 SS G_CDS: 3.86 Total: -47.75 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.30 Total: -55.82 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -1.52 Total: -27.59 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.61 Total: 42.70 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -69.39 5.12 -64.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227370371.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.952 kcal (2) G-P(sol) polarization free energy of solvation -69.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds