Wall clock time and date at job start Tue Mar 31 2020 11:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21282 * 120.00441 * 2 1 4 4 C 1.46959 * 119.99937 * 180.02562 * 2 1 3 5 5 C 1.40943 * 119.77855 * 359.97438 * 4 2 1 6 6 C 1.35588 * 120.79107 * 180.02562 * 5 4 2 7 7 C 1.40852 * 120.07403 * 359.96544 * 6 5 4 8 8 C 1.40274 * 120.91366 * 180.02562 * 7 6 5 9 9 C 1.37716 * 119.59540 * 180.02562 * 8 7 6 10 10 O 1.35810 * 119.63209 * 179.97438 * 9 8 7 11 11 C 1.42897 * 116.99996 * 185.70442 * 10 9 8 12 12 H 1.09003 * 109.47278 * 21.52850 * 11 10 9 13 13 C 1.50699 * 109.47292 * 141.52827 * 11 10 9 14 14 H 1.08005 * 119.99664 * 34.93851 * 13 11 10 15 15 C 1.37877 * 120.00161 * 214.93310 * 13 11 10 16 16 N 1.31511 * 119.99856 * 183.82898 * 15 13 11 17 17 Si 1.86803 * 120.00033 * 3.83076 * 15 13 11 18 18 H 1.48500 * 109.47057 * 84.87232 * 17 15 13 19 19 H 1.48498 * 109.46947 * 204.87051 * 17 15 13 20 20 H 1.48502 * 109.46788 * 324.87283 * 17 15 13 21 21 C 1.52999 * 109.47087 * 261.53318 * 11 10 9 22 22 Cl 1.80303 * 109.47105 * 65.50015 * 21 11 10 23 23 C 1.39913 * 120.73690 * 0.25548 * 9 8 7 24 24 C 1.35908 * 120.88092 * 359.49469 * 23 9 8 25 25 C 1.40763 * 119.88786 * 0.47960 * 24 23 9 26 26 C 1.38898 * 119.77584 * 180.02562 * 4 2 1 27 27 H 1.08992 * 109.47248 * 239.99734 * 1 2 3 28 28 H 1.08998 * 109.46922 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46788 * 119.99661 * 1 2 3 30 30 H 1.07998 * 119.60340 * 0.05270 * 5 4 2 31 31 H 1.07998 * 119.95984 * 180.02562 * 6 5 4 32 32 H 1.08001 * 120.20550 * 359.97438 * 8 7 6 33 33 H 0.97006 * 119.99998 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.47180 * 185.49943 * 21 11 10 35 35 H 1.09001 * 109.47091 * 305.50114 * 21 11 10 36 36 H 1.07995 * 119.55781 * 179.74536 * 23 9 8 37 37 H 1.08005 * 120.05076 * 180.26087 * 24 23 9 38 38 H 1.07996 * 120.27194 * 359.95561 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 6 2.2417 -1.2727 -0.0006 5 6 1.5323 -2.4906 -0.0006 6 6 2.1894 -3.6766 -0.0006 7 6 3.5976 -3.7033 -0.0013 8 6 4.2953 -4.9203 -0.0019 9 6 5.6725 -4.9147 -0.0020 10 8 6.3487 -6.0925 -0.0020 11 6 7.7704 -6.0242 0.1243 12 1 8.0499 -5.0718 0.5748 13 6 8.2519 -7.1536 0.9982 14 1 7.7552 -8.1121 0.9642 15 6 9.3265 -6.9634 1.8409 16 7 9.7940 -7.9692 2.5475 17 14 10.1181 -5.2771 1.9790 18 1 9.3739 -4.4607 2.9713 19 1 11.5284 -5.4269 2.4192 20 1 10.0813 -4.6032 0.6562 21 6 8.4117 -6.1412 -1.2599 22 17 7.9643 -4.7043 -2.2529 23 6 6.3827 -3.7092 0.0037 24 6 5.7319 -2.5161 -0.0007 25 6 4.3246 -2.4848 -0.0010 26 6 3.6307 -1.2673 0.0000 27 1 -0.3633 -0.5138 0.8899 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8901 30 1 0.4524 -2.4789 -0.0010 31 1 1.6323 -4.6018 -0.0010 32 1 3.7558 -5.8559 -0.0013 33 1 10.5498 -7.8353 3.1407 34 1 9.4956 -6.1874 -1.1554 35 1 8.0549 -7.0470 -1.7502 36 1 7.4625 -3.7271 0.0076 37 1 6.2936 -1.5936 -0.0005 38 1 4.1715 -0.3325 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227761491.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:57 Heat of formation + Delta-G solvation = -47.824885 kcal Electronic energy + Delta-G solvation = -23321.987354 eV Core-core repulsion = 19734.318105 eV Total energy + Delta-G solvation = -3587.669249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52564 -39.42387 -38.25173 -35.56307 -35.12719 -33.39067 -32.52254 -31.24732 -30.60682 -29.26560 -28.36560 -25.49305 -23.76033 -23.48183 -21.90551 -21.21732 -20.01265 -18.09847 -17.42744 -17.14172 -16.40291 -15.82010 -15.15679 -15.10675 -15.00290 -14.71107 -14.36856 -14.26892 -13.60651 -13.43957 -13.28835 -13.13560 -13.04397 -12.85630 -12.67467 -12.38293 -12.28515 -11.82146 -11.65479 -11.44669 -11.22075 -11.08206 -10.73430 -10.64561 -10.20365 -9.93351 -9.87077 -9.78827 -9.55208 -9.41811 -9.01589 -8.16537 -7.39528 -6.56690 -4.65383 0.42095 0.90374 2.00704 2.31791 2.82283 2.99879 3.04016 3.09067 3.25458 3.85654 3.97225 3.98479 4.25165 4.67368 4.77673 4.78977 4.91368 5.04734 5.15329 5.16765 5.22709 5.24431 5.35316 5.48041 5.62795 5.63434 5.74037 5.81822 5.86751 6.01500 6.07452 6.18744 6.31694 6.35301 6.44458 6.61764 6.64178 6.87286 6.97677 7.05839 7.43290 7.76563 8.19859 8.56266 8.98942 10.53683 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.003363 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.102817 B = 8322.909958 C = 8384.414813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.397 3.603 3 O -0.471 6.471 4 C -0.207 4.207 5 C -0.078 4.078 6 C -0.127 4.127 7 C 0.019 3.981 8 C -0.191 4.191 9 C 0.182 3.818 10 O -0.295 6.295 11 C 0.173 3.827 12 H 0.052 0.948 13 C -0.527 4.527 14 H 0.092 0.908 15 C 0.088 3.912 16 N -0.866 5.866 17 Si 0.859 3.141 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.258 1.258 21 C -0.038 4.038 22 Cl -0.228 7.228 23 C -0.179 4.179 24 C -0.064 4.064 25 C -0.111 4.111 26 C -0.010 4.010 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.275 0.725 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.749 9.951 -5.185 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.277 3.723 3 O -0.348 6.348 4 C -0.208 4.208 5 C -0.096 4.096 6 C -0.145 4.145 7 C 0.019 3.981 8 C -0.210 4.210 9 C 0.134 3.866 10 O -0.207 6.207 11 C 0.118 3.882 12 H 0.069 0.931 13 C -0.564 4.564 14 H 0.110 0.890 15 C -0.119 4.119 16 N -0.501 5.501 17 Si 0.684 3.316 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.101 4.101 22 Cl -0.203 7.203 23 C -0.197 4.197 24 C -0.082 4.082 25 C -0.111 4.111 26 C -0.029 4.029 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.361 10.301 -5.126 16.888 hybrid contribution 0.769 0.752 0.105 1.080 sum -11.592 11.053 -5.021 16.786 Atomic orbital electron populations 1.22229 0.94124 1.04760 1.04462 1.22426 0.91566 0.87690 0.70630 1.90527 1.72250 1.34477 1.37583 1.20196 0.94149 0.94618 1.11832 1.20830 0.99566 0.91298 0.97881 1.20840 0.92759 0.98267 1.02601 1.17884 0.93236 0.91967 0.95052 1.20339 0.91266 0.97591 1.11798 1.19295 0.91829 0.85928 0.89549 1.86304 1.23260 1.26511 1.84620 1.20933 0.75635 0.99893 0.91748 0.93073 1.20705 1.15537 0.97966 1.22176 0.89010 1.24961 0.95992 0.97044 0.93926 1.69825 1.24395 1.30914 1.24948 0.87102 0.79881 0.84536 0.80064 1.18902 1.20030 1.18268 1.25976 1.02983 0.87985 0.93121 1.98675 1.94649 1.50729 1.76199 1.21413 1.01621 0.92295 1.04390 1.20865 0.92602 0.97903 0.96851 1.17932 0.93554 0.92703 1.06917 1.21606 0.93253 0.97271 0.90741 0.88903 0.90041 0.88927 0.85589 0.85256 0.84750 0.91440 0.88134 0.88542 0.84423 0.85398 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.41 8.90 36.00 0.32 -1.09 16 2 C 0.40 4.55 7.21 -30.78 -0.22 4.33 16 3 O -0.47 -6.98 17.03 5.56 0.09 -6.88 16 4 C -0.21 -2.53 5.86 -105.10 -0.62 -3.15 16 5 C -0.08 -0.82 9.37 -39.51 -0.37 -1.19 16 6 C -0.13 -1.52 9.72 -39.54 -0.38 -1.91 16 7 C 0.02 0.28 5.75 -106.75 -0.61 -0.33 16 8 C -0.19 -3.16 9.72 -39.01 -0.38 -3.54 16 9 C 0.18 3.43 6.22 -39.15 -0.24 3.18 16 10 O -0.30 -6.26 9.67 -19.14 -0.19 -6.45 16 11 C 0.17 3.74 1.78 -27.88 -0.05 3.69 16 12 H 0.05 1.11 2.63 -51.93 -0.14 0.97 16 13 C -0.53 -13.38 9.24 -34.44 -0.32 -13.70 16 14 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 15 C 0.09 2.26 5.47 -17.82 -0.10 2.16 16 16 N -0.87 -23.71 13.96 55.43 0.77 -22.94 16 17 Si 0.86 18.74 26.96 -169.99 -4.58 14.16 16 18 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.26 -5.26 6.86 56.52 0.39 -4.87 16 21 C -0.04 -0.72 6.31 37.16 0.23 -0.49 16 22 Cl -0.23 -4.04 25.70 -51.86 -1.33 -5.37 16 23 C -0.18 -3.16 7.10 -39.79 -0.28 -3.44 16 24 C -0.06 -0.99 9.74 -39.46 -0.38 -1.37 16 25 C -0.11 -1.68 5.74 -106.83 -0.61 -2.29 16 26 C -0.01 -0.14 9.33 -38.63 -0.36 -0.50 16 27 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 28 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 30 H 0.13 0.89 6.97 -52.49 -0.37 0.53 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.13 2.03 8.06 -52.49 -0.42 1.60 16 33 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 35 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.14 2.51 4.76 -52.49 -0.25 2.26 16 37 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 38 H 0.13 1.72 7.61 -52.49 -0.40 1.32 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -28.53 334.90 -8.66 -37.19 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.10 Total: 4.88 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -4.38 Total: -19.64 kcal Atomic # 7 Polarization: -23.71 SS G_CDS: 0.77 Total: -22.94 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.09 Total: -13.33 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.58 Total: 14.16 kcal Atomic # 17 Polarization: -4.04 SS G_CDS: -1.33 Total: -5.37 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.53 -8.66 -37.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227761491.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.635 kcal (2) G-P(sol) polarization free energy of solvation -28.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds