Wall clock time and date at job start Tue Mar 31 2020 11:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21282 * 120.00441 * 2 1 4 4 C 1.46959 * 119.99937 * 180.02562 * 2 1 3 5 5 C 1.40943 * 119.77855 * 359.97438 * 4 2 1 6 6 C 1.35588 * 120.79107 * 180.02562 * 5 4 2 7 7 C 1.40852 * 120.07403 * 359.96544 * 6 5 4 8 8 C 1.40274 * 120.91366 * 180.02562 * 7 6 5 9 9 C 1.37716 * 119.59540 * 180.02562 * 8 7 6 10 10 O 1.35810 * 119.63209 * 179.97438 * 9 8 7 11 11 C 1.42897 * 116.99996 * 185.70442 * 10 9 8 12 12 H 1.09003 * 109.47278 * 21.52850 * 11 10 9 13 13 C 1.50699 * 109.47292 * 141.52827 * 11 10 9 14 14 H 1.08005 * 119.99664 * 34.93851 * 13 11 10 15 15 C 1.37877 * 120.00161 * 214.93310 * 13 11 10 16 16 N 1.31511 * 119.99856 * 183.82898 * 15 13 11 17 17 Si 1.86803 * 120.00033 * 3.83076 * 15 13 11 18 18 H 1.48500 * 109.47057 * 84.87232 * 17 15 13 19 19 H 1.48498 * 109.46947 * 204.87051 * 17 15 13 20 20 H 1.48502 * 109.46788 * 324.87283 * 17 15 13 21 21 C 1.52999 * 109.47087 * 261.53318 * 11 10 9 22 22 Cl 1.80303 * 109.47105 * 65.50015 * 21 11 10 23 23 C 1.39913 * 120.73690 * 0.25548 * 9 8 7 24 24 C 1.35908 * 120.88092 * 359.49469 * 23 9 8 25 25 C 1.40763 * 119.88786 * 0.47960 * 24 23 9 26 26 C 1.38898 * 119.77584 * 180.02562 * 4 2 1 27 27 H 1.08992 * 109.47248 * 239.99734 * 1 2 3 28 28 H 1.08998 * 109.46922 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46788 * 119.99661 * 1 2 3 30 30 H 1.07998 * 119.60340 * 0.05270 * 5 4 2 31 31 H 1.07998 * 119.95984 * 180.02562 * 6 5 4 32 32 H 1.08001 * 120.20550 * 359.97438 * 8 7 6 33 33 H 0.97006 * 119.99998 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.47180 * 185.49943 * 21 11 10 35 35 H 1.09001 * 109.47091 * 305.50114 * 21 11 10 36 36 H 1.07995 * 119.55781 * 179.74536 * 23 9 8 37 37 H 1.08005 * 120.05076 * 180.26087 * 24 23 9 38 38 H 1.07996 * 120.27194 * 359.95561 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 6 2.2417 -1.2727 -0.0006 5 6 1.5323 -2.4906 -0.0006 6 6 2.1894 -3.6766 -0.0006 7 6 3.5976 -3.7033 -0.0013 8 6 4.2953 -4.9203 -0.0019 9 6 5.6725 -4.9147 -0.0020 10 8 6.3487 -6.0925 -0.0020 11 6 7.7704 -6.0242 0.1243 12 1 8.0499 -5.0718 0.5748 13 6 8.2519 -7.1536 0.9982 14 1 7.7552 -8.1121 0.9642 15 6 9.3265 -6.9634 1.8409 16 7 9.7940 -7.9692 2.5475 17 14 10.1181 -5.2771 1.9790 18 1 9.3739 -4.4607 2.9713 19 1 11.5284 -5.4269 2.4192 20 1 10.0813 -4.6032 0.6562 21 6 8.4117 -6.1412 -1.2599 22 17 7.9643 -4.7043 -2.2529 23 6 6.3827 -3.7092 0.0037 24 6 5.7319 -2.5161 -0.0007 25 6 4.3246 -2.4848 -0.0010 26 6 3.6307 -1.2673 0.0000 27 1 -0.3633 -0.5138 0.8899 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8901 30 1 0.4524 -2.4789 -0.0010 31 1 1.6323 -4.6018 -0.0010 32 1 3.7558 -5.8559 -0.0013 33 1 10.5498 -7.8353 3.1407 34 1 9.4956 -6.1874 -1.1554 35 1 8.0549 -7.0470 -1.7502 36 1 7.4625 -3.7271 0.0076 37 1 6.2936 -1.5936 -0.0005 38 1 4.1715 -0.3325 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227761491.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:56 Heat of formation + Delta-G solvation = -62.445498 kcal Electronic energy + Delta-G solvation = -23322.621352 eV Core-core repulsion = 19734.318105 eV Total energy + Delta-G solvation = -3588.303247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.67713 -40.58295 -39.48890 -36.94321 -36.42910 -35.19668 -33.70964 -32.49461 -31.91053 -30.27161 -29.44219 -27.30742 -24.89917 -24.68019 -23.02639 -22.64203 -21.09755 -19.71263 -18.97176 -18.16454 -17.67537 -17.12386 -16.53860 -16.29749 -16.04121 -15.94502 -15.61668 -15.41739 -15.04820 -14.80531 -14.76709 -14.38224 -14.31637 -14.09123 -13.85247 -13.42181 -13.13791 -12.99360 -12.95145 -12.76712 -12.68898 -12.61420 -12.00833 -11.94963 -11.84932 -11.48123 -11.18150 -11.11186 -10.91766 -10.77376 -10.71785 -9.33229 -8.62482 -8.53376 -6.67663 -0.66747 -0.17424 0.88027 1.20956 1.28066 1.30481 1.34926 1.35954 2.14031 2.16903 2.38248 2.88462 3.12190 3.13500 3.62035 3.76527 3.90056 3.95365 4.09275 4.10469 4.17459 4.21770 4.30793 4.34042 4.38333 4.57812 4.73505 4.79374 4.82510 4.86364 4.92134 5.12039 5.13527 5.20993 5.23745 5.37604 5.42007 5.51575 5.73179 5.89098 5.96593 6.44347 6.56564 6.65911 7.01983 8.61334 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.003363 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.102817 B = 8322.909958 C = 8384.414813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.397 3.603 3 O -0.511 6.511 4 C -0.202 4.202 5 C -0.060 4.060 6 C -0.130 4.130 7 C 0.003 3.997 8 C -0.189 4.189 9 C 0.145 3.855 10 O -0.318 6.318 11 C 0.181 3.819 12 H 0.055 0.945 13 C -0.537 4.537 14 H 0.048 0.952 15 C 0.041 3.959 16 N -0.916 5.916 17 Si 0.916 3.084 18 H -0.263 1.263 19 H -0.269 1.269 20 H -0.235 1.235 21 C -0.035 4.035 22 Cl -0.208 7.208 23 C -0.196 4.196 24 C -0.062 4.062 25 C -0.119 4.119 26 C -0.030 4.030 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.173 0.827 31 H 0.156 0.844 32 H 0.143 0.857 33 H 0.278 0.722 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.149 0.851 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.555 12.473 -5.985 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.279 3.721 3 O -0.391 6.391 4 C -0.203 4.203 5 C -0.077 4.077 6 C -0.147 4.147 7 C 0.003 3.997 8 C -0.208 4.208 9 C 0.099 3.901 10 O -0.231 6.231 11 C 0.125 3.875 12 H 0.072 0.928 13 C -0.574 4.574 14 H 0.066 0.934 15 C -0.162 4.162 16 N -0.552 5.552 17 Si 0.737 3.263 18 H -0.187 1.187 19 H -0.194 1.194 20 H -0.157 1.157 21 C -0.097 4.097 22 Cl -0.182 7.182 23 C -0.214 4.214 24 C -0.080 4.080 25 C -0.119 4.119 26 C -0.049 4.049 27 H 0.136 0.864 28 H 0.102 0.898 29 H 0.137 0.863 30 H 0.191 0.809 31 H 0.174 0.826 32 H 0.160 0.840 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.167 0.833 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.195 12.829 -5.948 20.757 hybrid contribution 1.318 0.085 0.308 1.356 sum -13.877 12.914 -5.641 19.778 Atomic orbital electron populations 1.22280 0.90051 1.05857 1.06768 1.23057 0.93651 0.86461 0.68916 1.90530 1.73488 1.35637 1.39416 1.20617 0.93788 0.96156 1.09776 1.21287 1.01779 0.89647 0.95036 1.21177 0.91388 1.00210 1.01958 1.18155 0.94892 0.91157 0.95504 1.20571 0.90637 0.98784 1.10760 1.19535 0.92622 0.85429 0.92562 1.86204 1.22679 1.28243 1.86013 1.20674 0.76303 0.98167 0.92356 0.92784 1.20817 1.15547 0.97650 1.23415 0.93375 1.25725 0.96420 1.00716 0.93345 1.69949 1.25546 1.33292 1.26428 0.86192 0.78959 0.79928 0.81185 1.18739 1.19358 1.15747 1.25613 1.02954 0.88783 0.92393 1.98671 1.94626 1.49553 1.75359 1.21317 1.01112 0.92674 1.06343 1.21131 0.93235 0.97972 0.95632 1.18110 0.93543 0.93426 1.06796 1.21695 0.94369 0.96724 0.92064 0.86372 0.89845 0.86315 0.80919 0.82617 0.83965 0.91185 0.87529 0.88277 0.85380 0.83306 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 8.90 71.23 0.63 -1.13 16 2 C 0.40 7.75 7.21 27.97 0.20 7.96 16 3 O -0.51 -14.19 17.03 -3.04 -0.05 -14.24 16 4 C -0.20 -4.26 5.86 -20.17 -0.12 -4.38 16 5 C -0.06 -0.97 9.37 22.32 0.21 -0.76 16 6 C -0.13 -2.64 9.72 22.30 0.22 -2.42 16 7 C 0.00 0.09 5.75 -21.24 -0.12 -0.03 16 8 C -0.19 -6.19 9.72 22.64 0.22 -5.97 16 9 C 0.15 5.54 6.22 22.55 0.14 5.68 16 10 O -0.32 -13.99 9.67 -91.41 -0.88 -14.87 16 11 C 0.18 8.00 1.78 29.85 0.05 8.06 16 12 H 0.05 2.36 2.63 -2.39 -0.01 2.35 16 13 C -0.54 -28.66 9.24 25.60 0.24 -28.42 16 14 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 15 C 0.04 2.16 5.47 84.66 0.46 2.62 16 16 N -0.92 -52.29 13.96 21.45 0.30 -51.99 16 17 Si 0.92 38.95 26.96 68.60 1.85 40.80 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.23 -8.97 6.86 99.48 0.68 -8.29 16 21 C -0.03 -1.32 6.31 71.98 0.45 -0.87 16 22 Cl -0.21 -7.20 25.70 -2.72 -0.07 -7.27 16 23 C -0.20 -6.93 7.10 22.13 0.16 -6.77 16 24 C -0.06 -1.87 9.74 22.35 0.22 -1.65 16 25 C -0.12 -3.43 5.74 -21.30 -0.12 -3.55 16 26 C -0.03 -0.78 9.33 22.89 0.21 -0.56 16 27 H 0.12 0.56 8.07 -2.39 -0.02 0.54 16 28 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 29 H 0.12 0.54 8.07 -2.38 -0.02 0.52 16 30 H 0.17 1.21 6.97 -2.91 -0.02 1.19 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.28 14.69 8.31 -92.70 -0.77 13.92 16 34 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 35 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 36 H 0.13 4.66 4.76 -2.91 -0.01 4.65 16 37 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.13 3.33 7.61 -2.91 -0.02 3.30 16 Total: -1.00 -66.12 334.90 5.27 -60.84 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 1.07 Total: 18.93 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 3.05 Total: -32.19 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.30 Total: -51.99 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.94 Total: -29.12 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 1.85 Total: 40.80 kcal Atomic # 17 Polarization: -7.20 SS G_CDS: -0.07 Total: -7.27 kcal Total: -66.12 5.27 -60.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227761491.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.601 kcal (2) G-P(sol) polarization free energy of solvation -66.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds