Wall clock time and date at job start Tue Mar 31 2020 12:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76202 * 99.99847 * 2 1 4 4 N 1.32532 * 119.16668 * 359.97438 * 3 2 1 5 5 C 1.32864 * 120.78608 * 179.72393 * 4 3 2 6 6 O 1.35538 * 120.42995 * 179.97438 * 5 4 3 7 7 C 1.39067 * 119.14395 * 0.02562 * 5 4 3 8 8 C 1.39025 * 118.47147 * 359.97438 * 7 5 4 9 9 O 1.35528 * 120.42881 * 179.97438 * 8 7 5 10 10 C 1.42899 * 117.00091 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.46900 * 30.00202 * 10 9 8 12 12 C 1.50699 * 109.47430 * 270.00510 * 10 9 8 13 13 H 1.08003 * 119.99465 * 324.82425 * 12 10 9 14 14 C 1.37878 * 120.00194 * 144.82564 * 12 10 9 15 15 N 1.31512 * 119.99776 * 173.05739 * 14 12 10 16 16 Si 1.86794 * 119.99920 * 353.05706 * 14 12 10 17 17 H 1.48498 * 109.47377 * 85.11991 * 16 14 12 18 18 H 1.48500 * 109.47243 * 205.11974 * 16 14 12 19 19 H 1.48499 * 109.47032 * 325.11964 * 16 14 12 20 20 C 1.50704 * 109.47026 * 150.00091 * 10 9 8 21 21 C 1.38231 * 119.99854 * 36.42140 * 20 10 9 22 22 C 1.38234 * 119.99674 * 179.80534 * 21 20 10 23 23 C 1.38243 * 120.00242 * 0.39959 * 22 21 20 24 24 C 1.38230 * 119.99738 * 359.85477 * 23 22 21 25 25 C 1.38234 * 119.99838 * 216.68850 * 20 10 9 26 26 N 1.32508 * 119.16173 * 179.73196 * 3 2 1 27 27 H 1.08997 * 109.47109 * 300.00276 * 1 2 3 28 28 H 1.08998 * 109.46819 * 60.00267 * 1 2 3 29 29 H 1.08997 * 109.46747 * 179.97438 * 1 2 3 30 30 H 0.96696 * 114.00153 * 90.00049 * 6 5 4 31 31 H 1.08011 * 120.76481 * 179.97438 * 7 5 4 32 32 H 0.97001 * 119.99596 * 179.97438 * 15 14 12 33 33 H 1.07994 * 120.00169 * 0.02562 * 21 20 10 34 34 H 1.07998 * 120.00109 * 180.22931 * 22 21 20 35 35 H 1.07993 * 120.00097 * 179.83133 * 23 22 21 36 36 H 1.08004 * 120.00225 * 179.97438 * 24 23 22 37 37 H 1.08000 * 120.00121 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0884 2.5723 -0.0005 5 6 1.2820 3.8867 0.0050 6 8 0.2258 4.7362 0.0039 7 6 2.5823 4.3798 0.0108 8 6 3.6353 3.4720 0.0111 9 8 4.9182 3.9089 0.0162 10 6 5.9428 2.9128 0.0156 11 1 5.5844 2.0232 -0.5023 12 6 6.2990 2.5577 1.4362 13 1 6.2847 3.3184 2.2027 14 6 6.6432 1.2618 1.7573 15 7 7.0851 0.9784 2.9631 16 14 6.4819 -0.0913 0.4796 17 1 7.7061 -0.1278 -0.3601 18 1 6.3107 -1.3989 1.1623 19 1 5.3004 0.1771 -0.3791 20 6 7.1627 3.4474 -0.6896 21 6 7.5112 4.7782 -0.5549 22 6 8.6324 5.2676 -1.1986 23 6 9.4004 4.4280 -1.9836 24 6 9.0489 3.0984 -2.1225 25 6 7.9299 2.6081 -1.4756 26 7 3.3676 2.1702 0.0054 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.0842 4.9795 0.8869 31 1 2.7698 5.4434 0.0149 32 1 7.3269 0.0666 3.1891 33 1 6.9096 5.4348 0.0560 34 1 8.9068 6.3065 -1.0904 35 1 10.2748 4.8109 -2.4886 36 1 9.6487 2.4424 -2.7361 37 1 7.6554 1.5692 -1.5840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228093867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:45 Heat of formation + Delta-G solvation = 4.683487 kcal Electronic energy + Delta-G solvation = -23927.625631 eV Core-core repulsion = 20376.569773 eV Total energy + Delta-G solvation = -3551.055858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.81250 -38.97969 -37.93328 -36.94221 -33.28331 -32.32151 -31.49353 -30.64871 -30.28458 -28.82802 -27.36440 -24.45452 -23.97299 -22.70074 -21.98894 -20.52335 -19.35308 -17.94439 -17.36935 -17.16308 -16.37473 -16.14999 -15.42266 -15.19517 -14.99118 -14.49867 -14.27959 -14.20014 -13.97937 -13.63475 -13.21788 -12.93315 -12.81184 -12.72982 -12.55498 -12.19381 -12.05081 -11.82155 -11.18567 -10.94414 -10.81135 -10.46536 -10.34121 -10.07742 -9.96601 -9.78706 -9.68752 -9.10131 -8.83043 -8.70616 -8.33281 -7.97545 -7.63423 -6.30727 -4.35742 1.00250 1.36506 1.42161 1.96669 2.00345 2.23507 3.20128 3.31297 3.32698 3.42325 3.77810 3.94157 4.28407 4.40672 4.84591 5.03357 5.04637 5.16802 5.23756 5.36990 5.44345 5.46791 5.53139 5.60730 5.80202 5.83163 6.03622 6.12725 6.23575 6.43340 6.58289 6.66040 7.02313 7.03902 7.16202 7.22954 7.29288 7.41032 7.60518 7.76647 8.15595 8.26970 8.74156 9.28616 10.79884 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.005319 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.021812 B = 5263.305230 C = 6505.961190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S 0.006 5.994 3 C 0.355 3.645 4 N -0.580 5.580 5 C 0.388 3.612 6 O -0.476 6.476 7 C -0.281 4.281 8 C 0.419 3.581 9 O -0.292 6.292 10 C 0.207 3.793 11 H 0.073 0.927 12 C -0.524 4.524 13 H 0.082 0.918 14 C 0.094 3.906 15 N -0.876 5.876 16 Si 0.851 3.149 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.234 1.234 20 C -0.042 4.042 21 C -0.103 4.103 22 C -0.124 4.124 23 C -0.143 4.143 24 C -0.120 4.120 25 C -0.126 4.126 26 N -0.539 5.539 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.405 0.595 31 H 0.154 0.846 32 H 0.270 0.730 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.887 2.868 -7.186 11.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.239 5.761 3 C -0.022 4.022 4 N -0.315 5.315 5 C 0.201 3.799 6 O -0.283 6.283 7 C -0.310 4.310 8 C 0.230 3.770 9 O -0.195 6.195 10 C 0.153 3.847 11 H 0.090 0.910 12 C -0.561 4.561 13 H 0.100 0.900 14 C -0.112 4.112 15 N -0.511 5.511 16 Si 0.677 3.323 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.158 1.158 20 C -0.042 4.042 21 C -0.121 4.121 22 C -0.142 4.142 23 C -0.161 4.161 24 C -0.138 4.138 25 C -0.144 4.144 26 N -0.273 5.273 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.264 0.736 31 H 0.171 0.829 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.033 1.115 -7.644 11.144 hybrid contribution -0.551 1.150 0.205 1.292 sum -8.583 2.265 -7.439 11.582 Atomic orbital electron populations 1.23533 0.94934 1.05883 1.07088 1.86065 1.05750 0.93782 1.90534 1.24219 0.85432 0.99646 0.92886 1.68194 1.35497 1.03845 1.23943 1.18832 0.85410 0.85793 0.89836 1.84686 1.47822 1.61598 1.34179 1.21732 0.90801 1.02408 1.16014 1.19805 0.86772 0.86978 0.83431 1.86208 1.10616 1.38921 1.83711 1.19692 0.80427 0.86728 0.97885 0.90971 1.20973 1.47695 0.96317 0.91098 0.89963 1.24875 0.92842 0.98173 0.95337 1.69874 1.40857 1.20633 1.19783 0.87213 0.80399 0.81784 0.82913 1.19628 1.20805 1.15764 1.20189 0.97595 0.93629 0.92834 1.20913 0.96711 0.95345 0.99174 1.21051 0.95665 0.99226 0.98217 1.20922 1.00142 0.94083 1.00968 1.20937 0.97005 0.95587 1.00257 1.20926 0.96318 0.99447 0.97703 1.68327 1.21244 1.15922 1.21854 0.89214 0.89268 0.87936 0.73601 0.82875 0.92003 0.86098 0.86809 0.86967 0.86768 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.62 101.05 0.97 -0.65 16 2 S 0.01 0.09 22.89 -107.50 -2.46 -2.37 16 3 C 0.36 6.73 7.85 -90.90 -0.71 6.01 16 4 N -0.58 -9.86 9.15 -13.56 -0.12 -9.99 16 5 C 0.39 6.11 7.82 -16.80 -0.13 5.98 16 6 O -0.48 -5.77 13.57 -18.31 -0.25 -6.02 16 7 C -0.28 -4.77 10.07 -38.98 -0.39 -5.16 16 8 C 0.42 8.71 7.48 -16.80 -0.13 8.59 16 9 O -0.29 -6.50 8.96 -18.28 -0.16 -6.67 16 10 C 0.21 4.94 1.84 -29.03 -0.05 4.89 16 11 H 0.07 1.78 3.74 -51.93 -0.19 1.58 16 12 C -0.52 -14.48 9.17 -34.44 -0.32 -14.80 16 13 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 14 C 0.09 2.65 5.47 -17.82 -0.10 2.55 16 15 N -0.88 -26.03 13.96 55.43 0.77 -25.25 16 16 Si 0.85 20.79 25.61 -169.99 -4.35 16.44 16 17 H -0.27 -6.33 6.43 56.52 0.36 -5.96 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.23 -5.54 6.36 56.52 0.36 -5.18 16 20 C -0.04 -0.92 4.98 -104.62 -0.52 -1.44 16 21 C -0.10 -2.05 9.35 -39.59 -0.37 -2.42 16 22 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 23 C -0.14 -2.31 10.05 -39.58 -0.40 -2.71 16 24 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 25 C -0.13 -2.59 9.35 -39.58 -0.37 -2.96 16 26 N -0.54 -11.69 8.76 -13.57 -0.12 -11.81 16 27 H 0.09 1.00 8.11 -51.92 -0.42 0.58 16 28 H 0.09 0.99 8.11 -51.92 -0.42 0.57 16 29 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.41 2.76 9.06 45.56 0.41 3.17 16 31 H 0.15 2.20 8.06 -52.48 -0.42 1.78 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.12 2.33 7.67 -52.49 -0.40 1.93 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.11 2.34 5.79 -52.49 -0.30 2.04 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -32.54 335.15 -8.04 -40.58 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -3.08 Total: 7.15 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -3.31 Total: -7.11 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.53 Total: -47.05 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.41 Total: -12.69 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.35 Total: 16.44 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.46 Total: -2.37 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.54 -8.04 -40.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228093867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.262 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds