Wall clock time and date at job start Tue Mar 31 2020 12:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76202 * 99.99847 * 2 1 4 4 N 1.32532 * 119.16668 * 359.97438 * 3 2 1 5 5 C 1.32864 * 120.78608 * 179.72393 * 4 3 2 6 6 O 1.35538 * 120.42995 * 179.97438 * 5 4 3 7 7 C 1.39067 * 119.14395 * 0.02562 * 5 4 3 8 8 C 1.39025 * 118.47147 * 359.97438 * 7 5 4 9 9 O 1.35528 * 120.42881 * 179.97438 * 8 7 5 10 10 C 1.42899 * 117.00091 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.46900 * 30.00202 * 10 9 8 12 12 C 1.50699 * 109.47430 * 270.00510 * 10 9 8 13 13 H 1.08003 * 119.99465 * 324.82425 * 12 10 9 14 14 C 1.37878 * 120.00194 * 144.82564 * 12 10 9 15 15 N 1.31512 * 119.99776 * 173.05739 * 14 12 10 16 16 Si 1.86794 * 119.99920 * 353.05706 * 14 12 10 17 17 H 1.48498 * 109.47377 * 85.11991 * 16 14 12 18 18 H 1.48500 * 109.47243 * 205.11974 * 16 14 12 19 19 H 1.48499 * 109.47032 * 325.11964 * 16 14 12 20 20 C 1.50704 * 109.47026 * 150.00091 * 10 9 8 21 21 C 1.38231 * 119.99854 * 36.42140 * 20 10 9 22 22 C 1.38234 * 119.99674 * 179.80534 * 21 20 10 23 23 C 1.38243 * 120.00242 * 0.39959 * 22 21 20 24 24 C 1.38230 * 119.99738 * 359.85477 * 23 22 21 25 25 C 1.38234 * 119.99838 * 216.68850 * 20 10 9 26 26 N 1.32508 * 119.16173 * 179.73196 * 3 2 1 27 27 H 1.08997 * 109.47109 * 300.00276 * 1 2 3 28 28 H 1.08998 * 109.46819 * 60.00267 * 1 2 3 29 29 H 1.08997 * 109.46747 * 179.97438 * 1 2 3 30 30 H 0.96696 * 114.00153 * 90.00049 * 6 5 4 31 31 H 1.08011 * 120.76481 * 179.97438 * 7 5 4 32 32 H 0.97001 * 119.99596 * 179.97438 * 15 14 12 33 33 H 1.07994 * 120.00169 * 0.02562 * 21 20 10 34 34 H 1.07998 * 120.00109 * 180.22931 * 22 21 20 35 35 H 1.07993 * 120.00097 * 179.83133 * 23 22 21 36 36 H 1.08004 * 120.00225 * 179.97438 * 24 23 22 37 37 H 1.08000 * 120.00121 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0884 2.5723 -0.0005 5 6 1.2820 3.8867 0.0050 6 8 0.2258 4.7362 0.0039 7 6 2.5823 4.3798 0.0108 8 6 3.6353 3.4720 0.0111 9 8 4.9182 3.9089 0.0162 10 6 5.9428 2.9128 0.0156 11 1 5.5844 2.0232 -0.5023 12 6 6.2990 2.5577 1.4362 13 1 6.2847 3.3184 2.2027 14 6 6.6432 1.2618 1.7573 15 7 7.0851 0.9784 2.9631 16 14 6.4819 -0.0913 0.4796 17 1 7.7061 -0.1278 -0.3601 18 1 6.3107 -1.3989 1.1623 19 1 5.3004 0.1771 -0.3791 20 6 7.1627 3.4474 -0.6896 21 6 7.5112 4.7782 -0.5549 22 6 8.6324 5.2676 -1.1986 23 6 9.4004 4.4280 -1.9836 24 6 9.0489 3.0984 -2.1225 25 6 7.9299 2.6081 -1.4756 26 7 3.3676 2.1702 0.0054 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.0842 4.9795 0.8869 31 1 2.7698 5.4434 0.0149 32 1 7.3269 0.0666 3.1891 33 1 6.9096 5.4348 0.0560 34 1 8.9068 6.3065 -1.0904 35 1 10.2748 4.8109 -2.4886 36 1 9.6487 2.4424 -2.7361 37 1 7.6554 1.5692 -1.5840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228093867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:44 Heat of formation + Delta-G solvation = -20.738277 kcal Electronic energy + Delta-G solvation = -23928.728001 eV Core-core repulsion = 20376.569773 eV Total energy + Delta-G solvation = -3552.158228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 3.71 seconds Orbital eigenvalues (eV) -42.23213 -40.48865 -39.30442 -38.25267 -35.19941 -33.86367 -33.09651 -32.06045 -31.70257 -29.78986 -29.16492 -25.87369 -25.60457 -24.26727 -23.41467 -22.05400 -20.67994 -19.51372 -19.32532 -18.43312 -17.83217 -17.52241 -16.91943 -16.68053 -16.50770 -15.99635 -15.75323 -15.60399 -15.28977 -14.90640 -14.88196 -14.62004 -14.25900 -14.15923 -13.69928 -13.53753 -13.49832 -13.21653 -12.92720 -12.64860 -12.15780 -12.02075 -11.90895 -11.73104 -11.47385 -11.37836 -11.31396 -10.87451 -10.55531 -10.32892 -9.76137 -9.51596 -8.91062 -8.46563 -6.54738 -0.36015 -0.00073 0.09029 0.51715 0.56802 1.15374 1.24796 1.31558 1.46618 1.89918 2.24570 2.41794 2.55316 2.84851 3.05869 3.42271 3.62505 4.04124 4.04439 4.14696 4.20670 4.24873 4.32856 4.35439 4.39156 4.56514 4.72538 4.79385 4.87594 4.95688 5.10478 5.21607 5.27347 5.60681 5.64204 5.76425 5.78341 5.90247 6.18431 6.29193 6.48145 6.51637 6.75202 7.14017 8.68508 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.005319 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.021812 B = 5263.305230 C = 6505.961190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.026 6.026 3 C 0.341 3.659 4 N -0.571 5.571 5 C 0.402 3.598 6 O -0.466 6.466 7 C -0.278 4.278 8 C 0.386 3.614 9 O -0.302 6.302 10 C 0.220 3.780 11 H 0.063 0.937 12 C -0.524 4.524 13 H 0.036 0.964 14 C 0.047 3.953 15 N -0.926 5.926 16 Si 0.905 3.095 17 H -0.253 1.253 18 H -0.282 1.282 19 H -0.229 1.229 20 C -0.077 4.077 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.130 4.130 24 C -0.119 4.119 25 C -0.148 4.148 26 N -0.577 5.577 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.432 0.568 31 H 0.177 0.823 32 H 0.271 0.729 33 H 0.113 0.887 34 H 0.149 0.851 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.415 3.591 -9.490 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.207 5.793 3 C -0.035 4.035 4 N -0.306 5.306 5 C 0.215 3.785 6 O -0.277 6.277 7 C -0.305 4.305 8 C 0.198 3.802 9 O -0.205 6.205 10 C 0.165 3.835 11 H 0.081 0.919 12 C -0.561 4.561 13 H 0.054 0.946 14 C -0.155 4.155 15 N -0.564 5.564 16 Si 0.728 3.272 17 H -0.177 1.177 18 H -0.208 1.208 19 H -0.152 1.152 20 C -0.077 4.077 21 C -0.139 4.139 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.137 4.137 25 C -0.166 4.166 26 N -0.312 5.312 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.154 0.846 30 H 0.295 0.705 31 H 0.194 0.806 32 H 0.081 0.919 33 H 0.131 0.869 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.165 0.835 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.602 1.860 -9.946 13.280 hybrid contribution -0.552 1.097 0.895 1.520 sum -9.154 2.958 -9.050 13.208 Atomic orbital electron populations 1.23633 0.90396 1.08130 1.07346 1.86110 1.10727 0.92464 1.90043 1.24647 0.85004 1.01006 0.92837 1.68308 1.34532 1.04247 1.23519 1.18911 0.85893 0.85813 0.87917 1.84656 1.46174 1.60473 1.36376 1.21951 0.90326 1.03025 1.15210 1.20235 0.86788 0.87907 0.85225 1.86143 1.11386 1.38262 1.84719 1.19353 0.81557 0.87162 0.95398 0.91903 1.21044 1.47292 0.95286 0.92518 0.94605 1.25568 0.92587 1.00285 0.97019 1.69996 1.43381 1.21168 1.21848 0.86377 0.81224 0.78734 0.80876 1.17740 1.20783 1.15224 1.20169 0.97347 0.95192 0.95041 1.21014 0.98224 0.94614 1.00079 1.21460 0.94139 1.01165 0.96870 1.21457 1.00616 0.93226 0.99452 1.21357 0.95886 0.96909 0.99503 1.21061 0.97745 0.99056 0.98782 1.68253 1.23008 1.16676 1.23256 0.88923 0.88844 0.84577 0.70470 0.80554 0.91930 0.86902 0.83288 0.82507 0.83454 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.62 113.37 1.09 -1.44 16 2 S -0.03 -0.83 22.89 -56.49 -1.29 -2.13 16 3 C 0.34 12.97 7.85 180.45 1.42 14.38 16 4 N -0.57 -18.77 9.15 -309.45 -2.83 -21.61 16 5 C 0.40 12.03 7.82 84.74 0.66 12.69 16 6 O -0.47 -9.91 13.57 -88.43 -1.20 -11.11 16 7 C -0.28 -9.30 10.07 22.66 0.23 -9.07 16 8 C 0.39 16.57 7.48 84.72 0.63 17.20 16 9 O -0.30 -14.11 8.96 -88.32 -0.79 -14.90 16 10 C 0.22 11.02 1.84 29.10 0.05 11.07 16 11 H 0.06 3.23 3.74 -2.39 -0.01 3.22 16 12 C -0.52 -30.80 9.17 25.60 0.23 -30.56 16 13 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 14 C 0.05 2.76 5.47 84.66 0.46 3.22 16 15 N -0.93 -57.90 13.96 21.45 0.30 -57.60 16 16 Si 0.90 44.62 25.61 68.60 1.76 46.38 16 17 H -0.25 -11.58 6.43 99.48 0.64 -10.94 16 18 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 19 H -0.23 -11.00 6.36 99.48 0.63 -10.37 16 20 C -0.08 -3.47 4.98 -19.87 -0.10 -3.57 16 21 C -0.12 -4.83 9.35 22.27 0.21 -4.62 16 22 C -0.12 -3.71 10.05 22.27 0.22 -3.48 16 23 C -0.13 -3.68 10.05 22.27 0.22 -3.45 16 24 C -0.12 -3.82 10.05 22.27 0.22 -3.59 16 25 C -0.15 -6.05 9.35 22.27 0.21 -5.84 16 26 N -0.58 -25.78 8.76 -309.45 -2.71 -28.49 16 27 H 0.09 1.85 8.11 -2.40 -0.02 1.83 16 28 H 0.09 1.84 8.11 -2.40 -0.02 1.82 16 29 H 0.14 1.84 8.14 -2.40 -0.02 1.82 16 30 H 0.43 4.39 9.06 -74.06 -0.67 3.72 16 31 H 0.18 4.89 8.06 -2.90 -0.02 4.86 16 32 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 33 H 0.11 4.53 7.67 -2.91 -0.02 4.51 16 34 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 35 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 36 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 37 H 0.10 4.33 5.79 -2.91 -0.02 4.31 16 Total: -1.00 -76.32 335.15 -0.69 -77.00 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.31 Total: 19.50 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.77 Total: -7.06 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -5.24 Total: -107.69 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -1.99 Total: -26.00 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.76 Total: 46.38 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -1.29 Total: -2.13 kcal Total: -76.32 -0.69 -77.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228093867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.264 kcal (2) G-P(sol) polarization free energy of solvation -76.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.72 seconds