Wall clock time and date at job start Tue Mar 31 2020 12:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48503 * 109.46800 * 239.99795 * 3 2 1 5 5 H 1.48494 * 109.47250 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47064 * 120.00144 * 3 2 1 7 7 C 1.37876 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99957 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00042 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.47963 * 110.99970 * 169.99905 * 10 9 7 12 12 C 1.53942 * 86.17818 * 222.41924 * 11 10 9 13 13 O 1.42900 * 113.73409 * 138.08163 * 12 11 10 14 14 C 1.35576 * 117.00294 * 151.89728 * 13 12 11 15 15 C 1.39938 * 119.19447 * 180.31004 * 14 13 12 16 16 C 1.36468 * 119.87914 * 180.30434 * 15 14 13 17 17 Cl 1.73599 * 120.89060 * 179.69424 * 16 15 14 18 18 C 1.41098 * 118.22497 * 359.41777 * 16 15 14 19 19 C 1.40322 * 121.29023 * 180.25672 * 18 16 15 20 20 C 1.36197 * 119.63821 * 179.97438 * 19 18 16 21 21 C 1.39292 * 120.84593 * 0.03663 * 20 19 18 22 22 C 1.36128 * 121.02748 * 359.97438 * 21 20 19 23 23 C 1.40535 * 119.76178 * 0.02562 * 22 21 20 24 24 N 1.31578 * 119.18891 * 359.97438 * 14 13 12 25 25 C 1.48192 * 111.07199 * 70.56558 * 10 9 7 26 26 H 0.97003 * 120.00093 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47314 * 59.99737 * 9 7 2 28 28 H 1.09007 * 109.46929 * 299.99675 * 9 7 2 29 29 H 1.09000 * 113.75904 * 108.09974 * 11 10 9 30 30 H 1.08997 * 113.76050 * 336.73163 * 11 10 9 31 31 H 1.09003 * 113.73194 * 269.25031 * 12 11 10 32 32 H 1.08003 * 120.06472 * 0.02562 * 15 14 13 33 33 H 1.08003 * 120.17842 * 359.97438 * 19 18 16 34 34 H 1.08009 * 119.57756 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.48446 * 180.02562 * 21 20 19 36 36 H 1.08001 * 120.11833 * 180.02562 * 22 21 20 37 37 H 1.09005 * 113.75635 * 23.24059 * 25 10 9 38 38 H 1.08996 * 113.82646 * 251.81465 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5161 -4.9027 0.2404 12 6 2.6928 -5.2412 1.1736 13 8 2.2970 -5.8745 2.3919 14 6 3.1964 -6.7050 2.9744 15 6 2.8540 -7.3546 4.1656 16 6 3.7510 -8.1887 4.7673 17 17 3.3568 -9.0017 6.2496 18 6 5.0053 -8.3774 4.1492 19 6 5.9736 -9.2248 4.7090 20 6 7.1731 -9.3827 4.0836 21 6 7.4523 -8.7129 2.8947 22 6 6.5357 -7.8834 2.3247 23 6 5.2867 -7.6953 2.9409 24 7 4.3674 -6.8856 2.4022 25 6 2.9015 -3.7217 1.3046 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 1.4575 -5.5406 -0.6415 30 1 0.5617 -4.8001 0.7568 31 1 3.5143 -5.7555 0.6749 32 1 1.8833 -7.1926 4.6106 33 1 5.7687 -9.7489 5.6309 34 1 7.9175 -10.0355 4.5152 35 1 8.4105 -8.8545 2.4171 36 1 6.7674 -7.3716 1.4023 37 1 2.3531 -3.2729 2.1328 38 1 3.9477 -3.4176 1.2713 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228236503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:45 Heat of formation + Delta-G solvation = 53.351369 kcal Electronic energy + Delta-G solvation = -22937.138808 eV Core-core repulsion = 19386.149641 eV Total energy + Delta-G solvation = -3550.989166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28106 -39.72442 -37.99124 -37.30341 -35.97891 -33.43477 -32.86967 -30.69601 -30.02799 -29.08910 -25.80328 -25.38371 -24.22681 -23.73390 -22.47102 -21.51218 -19.51073 -19.03841 -17.96532 -17.70424 -16.45540 -15.82006 -15.73322 -15.49473 -14.97756 -14.85557 -14.43903 -14.33497 -14.20717 -13.98182 -13.66235 -13.12253 -12.74042 -12.47860 -12.12838 -12.02398 -11.97907 -11.86283 -11.60060 -11.44146 -11.37581 -10.90760 -10.70179 -10.40958 -10.33020 -10.05231 -9.84592 -9.70095 -9.20355 -8.83310 -8.51302 -8.31930 -7.89090 -6.06859 -4.09067 0.01682 0.56038 1.42777 1.59002 2.63079 3.01161 3.32253 3.35953 3.39283 3.77789 3.96847 4.28377 4.34578 4.40411 4.56762 4.69820 4.83843 4.88569 4.90634 5.08742 5.18077 5.29233 5.30634 5.43581 5.54001 5.67898 5.78524 5.96732 6.01343 6.05153 6.13581 6.15697 6.32684 6.39594 6.50040 6.60312 7.16459 7.27258 7.58591 7.63340 7.83300 8.05677 8.37001 8.97609 9.55443 11.04362 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.002689 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.243349 B =10411.955818 C =10997.492380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.164 3.836 10 N -0.471 5.471 11 C 0.003 3.997 12 C 0.050 3.950 13 O -0.290 6.290 14 C 0.373 3.627 15 C -0.168 4.168 16 C 0.049 3.951 17 Cl -0.039 7.039 18 C -0.135 4.135 19 C -0.081 4.081 20 C -0.130 4.130 21 C -0.087 4.087 22 C -0.104 4.104 23 C 0.185 3.815 24 N -0.532 5.532 25 C 0.013 3.987 26 H 0.263 0.737 27 H 0.035 0.965 28 H 0.001 0.999 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.156 0.844 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.075 0.925 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.300 -21.858 10.994 26.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.038 3.962 10 N -0.196 5.196 11 C -0.126 4.126 12 C -0.006 4.006 13 O -0.193 6.193 14 C 0.180 3.820 15 C -0.190 4.190 16 C 0.015 3.985 17 Cl -0.009 7.009 18 C -0.138 4.138 19 C -0.100 4.100 20 C -0.148 4.148 21 C -0.107 4.107 22 C -0.122 4.122 23 C 0.064 3.936 24 N -0.260 5.260 25 C -0.116 4.116 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.019 0.981 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.174 0.826 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.094 0.906 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.424 -21.185 9.803 25.989 hybrid contribution -0.396 0.572 1.494 1.648 sum 11.028 -20.612 11.297 25.964 Atomic orbital electron populations 1.69946 1.06079 1.27027 1.50608 1.24989 0.94891 0.99399 0.95204 0.86530 0.79447 0.82563 0.78727 1.20082 1.21269 1.20211 1.21044 0.93444 0.89894 1.50741 0.91973 1.20221 0.90820 0.88373 0.96832 1.68635 1.21344 1.01934 1.27709 1.24246 0.96155 0.94957 0.97200 1.25063 0.99990 0.93378 0.82208 1.86391 1.38456 1.54765 1.39730 1.19800 0.86667 0.87151 0.88354 1.20777 1.02350 0.99786 0.96072 1.20736 0.93688 0.95028 0.89090 1.98393 1.93498 1.77461 1.31596 1.18496 0.94434 1.03061 0.97768 1.20954 0.92896 0.96597 0.99554 1.20867 0.97157 1.00709 0.96085 1.20959 0.99309 0.95183 0.95210 1.20786 0.91116 0.99494 1.00848 1.18408 0.93388 0.91498 0.90351 1.67731 1.02203 1.21502 1.34521 1.24213 1.01550 0.91782 0.94049 0.92761 0.94674 0.98082 0.89346 0.90858 0.86092 0.82594 0.85048 0.85389 0.85063 0.84188 0.90633 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.59 8.84 -34.44 -0.30 -14.89 16 8 H 0.06 1.75 7.80 -52.48 -0.41 1.34 16 9 C 0.16 4.30 4.58 -4.98 -0.02 4.28 16 10 N -0.47 -10.38 6.25 -239.75 -1.50 -11.88 16 11 C 0.00 0.06 7.81 -2.75 -0.02 0.04 16 12 C 0.05 0.84 4.32 -25.80 -0.11 0.73 16 13 O -0.29 -4.66 10.12 -18.42 -0.19 -4.85 16 14 C 0.37 5.41 7.49 -17.02 -0.13 5.29 16 15 C -0.17 -2.03 9.76 -39.58 -0.39 -2.42 16 16 C 0.05 0.54 6.36 -39.14 -0.25 0.29 16 17 Cl -0.04 -0.35 27.65 -51.86 -1.43 -1.78 16 18 C -0.13 -1.53 5.75 -106.76 -0.61 -2.14 16 19 C -0.08 -0.73 9.46 -39.53 -0.37 -1.10 16 20 C -0.13 -0.98 9.96 -39.92 -0.40 -1.38 16 21 C -0.09 -0.69 9.94 -39.95 -0.40 -1.08 16 22 C -0.10 -1.07 9.98 -39.47 -0.39 -1.47 16 23 C 0.18 2.35 6.60 -84.86 -0.56 1.79 16 24 N -0.53 -7.76 8.54 -11.07 -0.09 -7.86 16 25 C 0.01 0.26 7.32 -2.63 -0.02 0.24 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.00 0.04 7.70 -51.92 -0.40 -0.36 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.07 1.35 7.79 -51.93 -0.40 0.94 16 31 H 0.12 1.99 6.89 -51.93 -0.36 1.63 16 32 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 33 H 0.13 0.95 7.05 -52.48 -0.37 0.58 16 34 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.08 1.59 7.79 -51.93 -0.40 1.18 16 38 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -30.98 340.33 -10.89 -41.87 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.44 Total: -1.08 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -4.08 Total: -10.29 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.86 Total: -45.77 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.19 Total: -4.85 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.43 Total: -1.78 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.98 -10.89 -41.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228236503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.220 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds