Wall clock time and date at job start Tue Mar 31 2020 12:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48503 * 109.46800 * 239.99795 * 3 2 1 5 5 H 1.48494 * 109.47250 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47064 * 120.00144 * 3 2 1 7 7 C 1.37876 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99957 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00042 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.47963 * 110.99970 * 169.99905 * 10 9 7 12 12 C 1.53942 * 86.17818 * 222.41924 * 11 10 9 13 13 O 1.42900 * 113.73409 * 138.08163 * 12 11 10 14 14 C 1.35576 * 117.00294 * 151.89728 * 13 12 11 15 15 C 1.39938 * 119.19447 * 180.31004 * 14 13 12 16 16 C 1.36468 * 119.87914 * 180.30434 * 15 14 13 17 17 Cl 1.73599 * 120.89060 * 179.69424 * 16 15 14 18 18 C 1.41098 * 118.22497 * 359.41777 * 16 15 14 19 19 C 1.40322 * 121.29023 * 180.25672 * 18 16 15 20 20 C 1.36197 * 119.63821 * 179.97438 * 19 18 16 21 21 C 1.39292 * 120.84593 * 0.03663 * 20 19 18 22 22 C 1.36128 * 121.02748 * 359.97438 * 21 20 19 23 23 C 1.40535 * 119.76178 * 0.02562 * 22 21 20 24 24 N 1.31578 * 119.18891 * 359.97438 * 14 13 12 25 25 C 1.48192 * 111.07199 * 70.56558 * 10 9 7 26 26 H 0.97003 * 120.00093 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47314 * 59.99737 * 9 7 2 28 28 H 1.09007 * 109.46929 * 299.99675 * 9 7 2 29 29 H 1.09000 * 113.75904 * 108.09974 * 11 10 9 30 30 H 1.08997 * 113.76050 * 336.73163 * 11 10 9 31 31 H 1.09003 * 113.73194 * 269.25031 * 12 11 10 32 32 H 1.08003 * 120.06472 * 0.02562 * 15 14 13 33 33 H 1.08003 * 120.17842 * 359.97438 * 19 18 16 34 34 H 1.08009 * 119.57756 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.48446 * 180.02562 * 21 20 19 36 36 H 1.08001 * 120.11833 * 180.02562 * 22 21 20 37 37 H 1.09005 * 113.75635 * 23.24059 * 25 10 9 38 38 H 1.08996 * 113.82646 * 251.81465 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5161 -4.9027 0.2404 12 6 2.6928 -5.2412 1.1736 13 8 2.2970 -5.8745 2.3919 14 6 3.1964 -6.7050 2.9744 15 6 2.8540 -7.3546 4.1656 16 6 3.7510 -8.1887 4.7673 17 17 3.3568 -9.0017 6.2496 18 6 5.0053 -8.3774 4.1492 19 6 5.9736 -9.2248 4.7090 20 6 7.1731 -9.3827 4.0836 21 6 7.4523 -8.7129 2.8947 22 6 6.5357 -7.8834 2.3247 23 6 5.2867 -7.6953 2.9409 24 7 4.3674 -6.8856 2.4022 25 6 2.9015 -3.7217 1.3046 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 1.4575 -5.5406 -0.6415 30 1 0.5617 -4.8001 0.7568 31 1 3.5143 -5.7555 0.6749 32 1 1.8833 -7.1926 4.6106 33 1 5.7687 -9.7489 5.6309 34 1 7.9175 -10.0355 4.5152 35 1 8.4105 -8.8545 2.4171 36 1 6.7674 -7.3716 1.4023 37 1 2.3531 -3.2729 2.1328 38 1 3.9477 -3.4176 1.2713 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228236503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:45 Heat of formation + Delta-G solvation = 32.438464 kcal Electronic energy + Delta-G solvation = -22938.045659 eV Core-core repulsion = 19386.149641 eV Total energy + Delta-G solvation = -3551.896018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.22984 -41.05702 -39.19706 -38.10317 -36.98865 -35.01504 -34.27919 -31.69171 -31.06581 -30.60662 -27.51845 -26.98098 -25.37931 -24.67322 -23.51806 -23.00317 -21.01638 -20.04964 -19.05431 -18.55519 -18.49907 -17.07560 -16.89630 -16.78895 -16.23464 -16.04365 -15.67746 -15.49991 -15.34007 -15.02579 -14.63843 -14.42760 -14.13019 -13.85315 -13.74507 -13.53012 -13.31294 -12.86690 -12.67282 -12.66258 -12.59077 -12.43993 -12.24631 -12.13875 -11.59941 -11.41481 -11.24934 -11.16488 -10.81418 -10.66701 -9.74021 -9.66190 -9.17282 -8.26339 -6.37417 -0.80457 -0.29253 0.58457 0.80311 1.38541 1.42059 1.50159 1.81271 1.86824 2.37317 2.94433 3.01342 3.06961 3.13833 3.39957 3.44643 3.53782 3.83984 3.95551 4.05991 4.20971 4.27796 4.39422 4.44488 4.45303 4.52912 4.58448 4.65337 4.74711 4.86074 4.90382 4.99626 5.07635 5.23880 5.34380 5.45822 5.46953 5.70514 5.78768 6.02811 6.10730 6.30170 6.66460 6.76201 7.32327 8.85344 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.002689 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.243349 B =10411.955818 C =10997.492380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.179 3.821 10 N -0.484 5.484 11 C 0.004 3.996 12 C 0.078 3.922 13 O -0.301 6.301 14 C 0.348 3.652 15 C -0.179 4.179 16 C 0.052 3.948 17 Cl -0.017 7.017 18 C -0.143 4.143 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.072 4.072 22 C -0.124 4.124 23 C 0.156 3.844 24 N -0.551 5.551 25 C 0.010 3.990 26 H 0.267 0.733 27 H 0.009 0.991 28 H -0.023 1.023 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.167 0.833 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.141 0.859 37 H 0.057 0.943 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.954 -23.471 12.094 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.078 0.922 9 C 0.052 3.948 10 N -0.209 5.209 11 C -0.124 4.124 12 C 0.021 3.979 13 O -0.206 6.206 14 C 0.156 3.844 15 C -0.200 4.200 16 C 0.018 3.982 17 Cl 0.012 6.988 18 C -0.146 4.146 19 C -0.108 4.108 20 C -0.135 4.135 21 C -0.092 4.092 22 C -0.143 4.143 23 C 0.035 3.965 24 N -0.278 5.278 25 C -0.119 4.119 26 H 0.075 0.925 27 H 0.027 0.973 28 H -0.006 1.006 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.185 0.815 33 H 0.167 0.833 34 H 0.183 0.817 35 H 0.183 0.817 36 H 0.158 0.842 37 H 0.076 0.924 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.102 -22.832 10.915 28.971 hybrid contribution -1.073 0.865 1.252 1.862 sum 13.029 -21.967 12.167 28.290 Atomic orbital electron populations 1.70070 1.07714 1.28197 1.51184 1.25933 0.95811 1.03303 0.94445 0.85409 0.78202 0.77703 0.79177 1.19194 1.20490 1.19259 1.21362 0.93541 0.91173 1.51050 0.92158 1.19874 0.90849 0.89755 0.94334 1.68514 1.21010 1.02121 1.29207 1.24302 0.96229 0.93239 0.98652 1.24545 0.99174 0.91534 0.82599 1.86340 1.39245 1.55642 1.39325 1.19973 0.86894 0.88091 0.89450 1.20831 1.03262 1.00301 0.95637 1.20816 0.93428 0.94413 0.89557 1.98397 1.93392 1.76855 1.30121 1.18729 0.95093 1.03301 0.97460 1.21235 0.92960 0.96306 1.00336 1.21350 0.97106 0.99771 0.95251 1.21389 0.99790 0.93121 0.94869 1.20978 0.91010 1.00865 1.01440 1.18796 0.93971 0.92196 0.91510 1.67626 1.02562 1.22269 1.35318 1.24183 1.00995 0.94370 0.92392 0.92461 0.97251 1.00561 0.86948 0.91384 0.85299 0.81533 0.83308 0.81725 0.81740 0.84152 0.92429 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 2 C 0.00 0.21 5.46 84.65 0.46 0.68 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.53 -31.17 8.84 25.60 0.23 -30.95 16 8 H 0.06 3.47 7.80 -2.91 -0.02 3.44 16 9 C 0.18 9.86 4.58 85.56 0.39 10.25 16 10 N -0.48 -22.04 6.25 -915.62 -5.72 -27.77 16 11 C 0.00 0.17 7.81 86.41 0.67 0.84 16 12 C 0.08 2.71 4.32 31.24 0.13 2.85 16 13 O -0.30 -10.00 10.12 -88.84 -0.90 -10.90 16 14 C 0.35 10.36 7.49 85.14 0.64 11.00 16 15 C -0.18 -4.36 9.76 22.27 0.22 -4.14 16 16 C 0.05 1.11 6.36 22.56 0.14 1.25 16 17 Cl -0.02 -0.28 27.65 -2.72 -0.08 -0.35 16 18 C -0.14 -3.06 5.75 -21.25 -0.12 -3.18 16 19 C -0.09 -1.34 9.46 22.30 0.21 -1.13 16 20 C -0.12 -1.28 9.96 22.05 0.22 -1.06 16 21 C -0.07 -0.89 9.94 22.03 0.22 -0.67 16 22 C -0.12 -2.39 9.98 22.34 0.22 -2.17 16 23 C 0.16 3.88 6.60 40.22 0.27 4.15 16 24 N -0.55 -16.30 8.54 -302.20 -2.58 -18.88 16 25 C 0.01 0.40 7.32 86.36 0.63 1.03 16 26 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 27 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 28 H -0.02 -1.37 7.70 -2.38 -0.02 -1.39 16 29 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 30 H 0.07 2.61 7.79 -2.39 -0.02 2.59 16 31 H 0.13 4.28 6.89 -2.39 -0.02 4.27 16 32 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.15 1.66 7.05 -2.91 -0.02 1.64 16 34 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.06 2.56 7.79 -2.38 -0.02 2.55 16 38 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -68.98 340.33 -1.35 -70.33 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.08 Total: 8.42 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 4.54 Total: -11.26 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -8.02 Total: -103.23 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.90 Total: -10.90 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.35 kcal Total: -68.98 -1.35 -70.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228236503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.768 kcal (2) G-P(sol) polarization free energy of solvation -68.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds