Wall clock time and date at job start Tue Mar 31 2020 12:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48497 * 109.46757 * 90.00380 * 3 2 1 5 5 H 1.48500 * 109.46881 * 210.00053 * 3 2 1 6 6 H 1.48495 * 109.47167 * 330.00168 * 3 2 1 7 7 C 1.37884 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00014 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47124 * 180.02562 * 9 7 2 11 11 C 1.47482 * 110.99952 * 265.96962 * 10 9 7 12 12 C 1.53509 * 87.93314 * 221.29713 * 11 10 9 13 13 O 1.42893 * 114.17240 * 139.67121 * 12 11 10 14 14 C 1.35921 * 117.00309 * 108.00992 * 13 12 11 15 15 C 1.36952 * 120.09665 * 353.98159 * 14 13 12 16 16 C 1.40703 * 118.15878 * 179.97438 * 15 14 13 17 17 C 1.40453 * 121.30568 * 180.02562 * 16 15 14 18 18 C 1.36145 * 119.62401 * 180.02562 * 17 16 15 19 19 C 1.39350 * 120.86035 * 359.96097 * 18 17 16 20 20 C 1.36096 * 121.06647 * 0.02562 * 19 18 17 21 21 C 1.40583 * 119.76582 * 359.97438 * 20 19 18 22 22 N 1.33702 * 120.98645 * 180.02562 * 21 20 19 23 23 C 1.31141 * 121.38160 * 179.74494 * 22 21 20 24 24 Cl 1.73601 * 119.18659 * 180.26364 * 23 22 21 25 25 C 1.47477 * 111.00318 * 169.99776 * 10 9 7 26 26 H 0.96996 * 119.99829 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46919 * 300.00051 * 9 7 2 28 28 H 1.09003 * 109.47329 * 59.99913 * 9 7 2 29 29 H 1.09001 * 113.47714 * 336.06201 * 11 10 9 30 30 H 1.08997 * 113.47838 * 106.53031 * 11 10 9 31 31 H 1.09005 * 114.34006 * 272.36717 * 12 11 10 32 32 H 1.08001 * 120.92191 * 359.97438 * 15 14 13 33 33 H 1.08001 * 120.18930 * 359.97438 * 17 16 15 34 34 H 1.07997 * 119.57561 * 179.97438 * 18 17 16 35 35 H 1.07997 * 119.47015 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.11440 * 179.97438 * 20 19 18 37 37 H 1.08997 * 113.48072 * 253.46952 * 25 10 9 38 38 H 1.09008 * 113.47264 * 23.87486 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.4754 -4.0804 -1.3740 12 6 2.4189 -5.5182 -0.8393 13 8 1.7490 -6.4380 -1.7036 14 6 2.5216 -7.3458 -2.3567 15 6 3.8865 -7.2748 -2.2699 16 6 4.6467 -8.2355 -2.9619 17 6 6.0505 -8.2250 -2.9182 18 6 6.7521 -9.1709 -3.6013 19 6 6.0956 -10.1508 -4.3434 20 6 4.7367 -10.1908 -4.4073 21 6 3.9770 -9.2313 -3.7156 22 7 2.6408 -9.2479 -3.7611 23 6 1.9244 -8.3597 -3.1148 24 17 0.1927 -8.4388 -3.2080 25 6 1.5184 -4.8986 0.2386 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 1.6755 -3.8466 -2.0765 30 1 3.4596 -3.7931 -1.7441 31 1 3.3700 -5.8954 -0.4634 32 1 4.3661 -6.5028 -1.6865 33 1 6.5704 -7.4704 -2.3467 34 1 7.8315 -9.1618 -3.5676 35 1 6.6745 -10.8901 -4.8770 36 1 4.2439 -10.9568 -4.9874 37 1 1.6915 -5.3048 1.2351 38 1 0.4627 -4.8828 -0.0326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229128996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:22 Heat of formation + Delta-G solvation = 57.865188 kcal Electronic energy + Delta-G solvation = -22981.098265 eV Core-core repulsion = 19430.304832 eV Total energy + Delta-G solvation = -3550.793433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38970 -40.00850 -38.17072 -37.00147 -36.27092 -33.38595 -32.93093 -30.54810 -30.00816 -29.14800 -25.94317 -25.48972 -24.46646 -23.66616 -22.57297 -21.61147 -19.74122 -18.90407 -18.14367 -17.84573 -16.51197 -16.05072 -15.83041 -15.57475 -15.03792 -14.86117 -14.51740 -14.42811 -14.35649 -13.75243 -13.51107 -13.23085 -12.69977 -12.41470 -12.27040 -12.21885 -12.09975 -11.76781 -11.38990 -11.32429 -11.20594 -11.05950 -10.77256 -10.61104 -10.35006 -10.07687 -10.00198 -9.86024 -9.32760 -8.70183 -8.50655 -8.28124 -8.10089 -6.09760 -4.11772 -0.01534 0.49035 1.61198 1.64776 2.50419 2.87202 3.28508 3.34460 3.38202 3.72467 4.04658 4.24326 4.36701 4.40654 4.45763 4.56488 4.64883 4.71423 4.84620 4.95016 4.97408 5.21224 5.25643 5.43327 5.48241 5.65534 5.69219 5.86509 5.95960 5.99297 6.04357 6.10598 6.12046 6.16082 6.39226 6.43747 7.05295 7.10416 7.36559 7.52932 7.73140 7.98927 8.33346 8.95060 9.52631 11.01304 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.002909 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.688078 B = 9622.228435 C =10802.615338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.161 3.839 10 N -0.459 5.459 11 C -0.003 4.003 12 C 0.037 3.963 13 O -0.283 6.283 14 C 0.108 3.892 15 C -0.156 4.156 16 C -0.059 4.059 17 C -0.104 4.104 18 C -0.105 4.105 19 C -0.113 4.113 20 C -0.078 4.078 21 C 0.104 3.896 22 N -0.436 5.436 23 C 0.193 3.807 24 Cl -0.010 7.010 25 C 0.006 3.994 26 H 0.263 0.737 27 H 0.032 0.968 28 H 0.008 0.992 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.158 0.842 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.248 -21.015 -7.293 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.035 3.965 10 N -0.184 5.184 11 C -0.132 4.132 12 C -0.020 4.020 13 O -0.193 6.193 14 C 0.058 3.942 15 C -0.183 4.183 16 C -0.061 4.061 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.133 4.133 20 C -0.097 4.097 21 C -0.017 4.017 22 N -0.147 5.147 23 C 0.012 3.988 24 Cl 0.018 6.982 25 C -0.123 4.123 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.025 0.975 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.176 0.824 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.105 0.895 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.908 -21.285 -7.378 24.610 hybrid contribution -0.011 1.519 0.007 1.519 sum 9.897 -19.767 -7.371 23.302 Atomic orbital electron populations 1.69950 1.06090 1.26978 1.50735 1.25011 0.94908 0.99459 0.95292 0.86452 0.79687 0.82848 0.78175 1.20557 1.19808 1.21238 1.21058 0.93586 0.89619 1.50404 0.91793 1.20297 0.90479 0.88622 0.97086 1.69059 1.33902 1.01470 1.13963 1.24300 1.03117 0.91074 0.94715 1.24718 0.97753 0.87657 0.91841 1.86313 1.34933 1.42126 1.55962 1.19224 0.90363 0.90418 0.94214 1.21559 0.91951 1.01613 1.03159 1.18655 0.95008 0.95140 0.97272 1.20996 0.91852 0.99500 0.99912 1.20977 1.00480 0.94483 0.96338 1.20883 0.94102 0.98989 0.99337 1.20749 0.93376 0.97429 0.98150 1.18601 0.87701 0.96444 0.98998 1.67400 1.06780 1.22562 1.17941 1.21278 0.88647 0.92178 0.96731 1.98430 1.05240 1.97646 1.96858 1.24039 0.98128 0.92482 0.97635 0.92786 0.94963 0.97454 0.90407 0.89939 0.87305 0.82436 0.84824 0.85294 0.85135 0.84546 0.89465 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.18 9.39 -34.44 -0.32 -14.50 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.16 4.09 4.57 -4.98 -0.02 4.07 16 10 N -0.46 -9.47 6.32 -246.12 -1.55 -11.03 16 11 C 0.00 -0.05 7.55 -7.55 -0.06 -0.11 16 12 C 0.04 0.54 4.02 -26.20 -0.11 0.43 16 13 O -0.28 -4.19 9.62 -19.49 -0.19 -4.38 16 14 C 0.11 1.48 6.66 -39.39 -0.26 1.22 16 15 C -0.16 -1.86 8.82 -39.12 -0.35 -2.20 16 16 C -0.06 -0.67 5.74 -106.81 -0.61 -1.28 16 17 C -0.10 -0.91 9.77 -39.50 -0.39 -1.30 16 18 C -0.10 -0.76 9.96 -39.92 -0.40 -1.16 16 19 C -0.11 -0.83 9.94 -39.94 -0.40 -1.23 16 20 C -0.08 -0.74 9.98 -39.47 -0.39 -1.14 16 21 C 0.10 1.27 6.60 -84.85 -0.56 0.70 16 22 N -0.44 -5.97 10.30 -7.98 -0.08 -6.06 16 23 C 0.19 2.70 7.28 -17.19 -0.13 2.58 16 24 Cl -0.01 -0.14 28.61 -51.86 -1.48 -1.62 16 25 C 0.01 0.10 7.52 -7.55 -0.06 0.05 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 27 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 28 H 0.01 0.20 7.30 -51.93 -0.38 -0.17 16 29 H 0.08 1.48 7.42 -51.93 -0.39 1.09 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.11 1.35 6.01 -51.93 -0.31 1.03 16 32 H 0.16 1.60 5.97 -52.49 -0.31 1.29 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.08 1.33 7.91 -51.92 -0.41 0.92 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -30.98 339.58 -10.92 -41.90 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.30 Total: -2.24 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -4.14 Total: -12.42 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.90 Total: -42.80 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.19 Total: -4.38 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.48 Total: -1.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.98 -10.92 -41.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229128996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.762 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds