Wall clock time and date at job start Tue Mar 31 2020 12:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48497 * 109.46757 * 90.00380 * 3 2 1 5 5 H 1.48500 * 109.46881 * 210.00053 * 3 2 1 6 6 H 1.48495 * 109.47167 * 330.00168 * 3 2 1 7 7 C 1.37884 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00014 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47124 * 180.02562 * 9 7 2 11 11 C 1.47482 * 110.99952 * 265.96962 * 10 9 7 12 12 C 1.53509 * 87.93314 * 221.29713 * 11 10 9 13 13 O 1.42893 * 114.17240 * 139.67121 * 12 11 10 14 14 C 1.35921 * 117.00309 * 108.00992 * 13 12 11 15 15 C 1.36952 * 120.09665 * 353.98159 * 14 13 12 16 16 C 1.40703 * 118.15878 * 179.97438 * 15 14 13 17 17 C 1.40453 * 121.30568 * 180.02562 * 16 15 14 18 18 C 1.36145 * 119.62401 * 180.02562 * 17 16 15 19 19 C 1.39350 * 120.86035 * 359.96097 * 18 17 16 20 20 C 1.36096 * 121.06647 * 0.02562 * 19 18 17 21 21 C 1.40583 * 119.76582 * 359.97438 * 20 19 18 22 22 N 1.33702 * 120.98645 * 180.02562 * 21 20 19 23 23 C 1.31141 * 121.38160 * 179.74494 * 22 21 20 24 24 Cl 1.73601 * 119.18659 * 180.26364 * 23 22 21 25 25 C 1.47477 * 111.00318 * 169.99776 * 10 9 7 26 26 H 0.96996 * 119.99829 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46919 * 300.00051 * 9 7 2 28 28 H 1.09003 * 109.47329 * 59.99913 * 9 7 2 29 29 H 1.09001 * 113.47714 * 336.06201 * 11 10 9 30 30 H 1.08997 * 113.47838 * 106.53031 * 11 10 9 31 31 H 1.09005 * 114.34006 * 272.36717 * 12 11 10 32 32 H 1.08001 * 120.92191 * 359.97438 * 15 14 13 33 33 H 1.08001 * 120.18930 * 359.97438 * 17 16 15 34 34 H 1.07997 * 119.57561 * 179.97438 * 18 17 16 35 35 H 1.07997 * 119.47015 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.11440 * 179.97438 * 20 19 18 37 37 H 1.08997 * 113.48072 * 253.46952 * 25 10 9 38 38 H 1.09008 * 113.47264 * 23.87486 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.4754 -4.0804 -1.3740 12 6 2.4189 -5.5182 -0.8393 13 8 1.7490 -6.4380 -1.7036 14 6 2.5216 -7.3458 -2.3567 15 6 3.8865 -7.2748 -2.2699 16 6 4.6467 -8.2355 -2.9619 17 6 6.0505 -8.2250 -2.9182 18 6 6.7521 -9.1709 -3.6013 19 6 6.0956 -10.1508 -4.3434 20 6 4.7367 -10.1908 -4.4073 21 6 3.9770 -9.2313 -3.7156 22 7 2.6408 -9.2479 -3.7611 23 6 1.9244 -8.3597 -3.1148 24 17 0.1927 -8.4388 -3.2080 25 6 1.5184 -4.8986 0.2386 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 1.6755 -3.8466 -2.0765 30 1 3.4596 -3.7931 -1.7441 31 1 3.3700 -5.8954 -0.4634 32 1 4.3661 -6.5028 -1.6865 33 1 6.5704 -7.4704 -2.3467 34 1 7.8315 -9.1618 -3.5676 35 1 6.6745 -10.8901 -4.8770 36 1 4.2439 -10.9568 -4.9874 37 1 1.6915 -5.3048 1.2351 38 1 0.4627 -4.8828 -0.0326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229128996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:21 Heat of formation + Delta-G solvation = 37.329954 kcal Electronic energy + Delta-G solvation = -22981.988740 eV Core-core repulsion = 19430.304832 eV Total energy + Delta-G solvation = -3551.683907 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.32518 -41.23006 -39.25360 -38.03641 -37.17152 -35.05328 -34.19246 -31.62025 -31.07623 -30.42013 -27.53386 -26.92171 -25.62612 -24.62420 -23.49499 -23.09678 -21.08800 -19.89214 -19.03943 -18.81057 -18.47653 -17.21559 -16.95679 -16.67698 -16.30250 -16.17109 -15.69366 -15.59939 -15.14126 -15.03829 -14.64364 -14.27635 -14.09688 -13.89990 -13.72926 -13.57704 -13.03044 -12.87841 -12.81375 -12.47751 -12.42540 -12.29030 -12.21691 -12.07402 -11.84782 -11.69076 -11.27259 -11.02587 -10.94867 -10.63609 -9.83531 -9.50946 -9.12876 -8.24711 -6.35465 -0.82947 -0.34609 0.64161 0.87349 1.40433 1.42016 1.53242 1.70897 1.79243 2.38767 2.93989 3.07635 3.15921 3.21908 3.28031 3.49032 3.55680 3.60661 3.83467 3.96043 4.16051 4.23909 4.33746 4.42470 4.50228 4.59033 4.62716 4.68055 4.76411 4.81401 4.83479 5.01967 5.04008 5.24620 5.36920 5.47904 5.51767 5.70173 5.79078 5.99962 6.06684 6.32718 6.45449 6.78598 7.34303 8.86759 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.002909 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.688078 B = 9622.228435 C =10802.615338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.263 1.263 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.064 0.936 9 C 0.176 3.824 10 N -0.471 5.471 11 C -0.009 4.009 12 C 0.067 3.933 13 O -0.297 6.297 14 C 0.082 3.918 15 C -0.143 4.143 16 C -0.074 4.074 17 C -0.111 4.111 18 C -0.095 4.095 19 C -0.096 4.096 20 C -0.099 4.099 21 C 0.084 3.916 22 N -0.452 5.452 23 C 0.174 3.826 24 Cl -0.021 7.021 25 C 0.001 3.999 26 H 0.265 0.735 27 H 0.005 0.995 28 H -0.020 1.020 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.177 0.823 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.144 0.856 37 H 0.109 0.891 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.145 -21.900 -7.637 27.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.187 1.187 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.082 0.918 9 C 0.049 3.951 10 N -0.194 5.194 11 C -0.138 4.138 12 C 0.011 3.989 13 O -0.208 6.208 14 C 0.033 3.967 15 C -0.170 4.170 16 C -0.076 4.076 17 C -0.130 4.130 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.038 4.038 22 N -0.163 5.163 23 C -0.006 4.006 24 Cl 0.007 6.993 25 C -0.128 4.128 26 H 0.074 0.926 27 H 0.023 0.977 28 H -0.002 1.002 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.159 0.841 32 H 0.194 0.806 33 H 0.174 0.826 34 H 0.182 0.818 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.127 0.873 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.810 -22.199 -7.728 27.262 hybrid contribution -1.050 1.603 0.016 1.916 sum 12.759 -20.597 -7.712 25.426 Atomic orbital electron populations 1.70081 1.07808 1.28079 1.51562 1.25968 0.95785 1.03419 0.94641 0.85334 0.78534 0.77930 0.78552 1.19678 1.18682 1.20797 1.21412 0.93752 0.90922 1.50372 0.91788 1.19942 0.90548 0.90216 0.94437 1.68926 1.32816 1.01591 1.16114 1.24318 1.02974 0.93540 0.92955 1.24396 0.98053 0.86302 0.90141 1.86277 1.35445 1.42549 1.56530 1.19274 0.91091 0.90776 0.95526 1.21807 0.91163 1.01643 1.02350 1.18907 0.96418 0.94907 0.97363 1.21320 0.90606 1.00607 1.00421 1.21464 1.02289 0.93082 0.94446 1.21353 0.93322 0.98970 0.97880 1.20990 0.94428 0.97547 0.98814 1.19094 0.87356 0.97576 0.99758 1.67376 1.07881 1.22760 1.18311 1.21315 0.88420 0.93021 0.97882 1.98412 1.06102 1.97740 1.96997 1.24090 0.97754 0.91053 0.99878 0.92578 0.97656 1.00222 0.92571 0.88482 0.84099 0.80600 0.82608 0.81761 0.81710 0.83815 0.87251 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.47 13.29 21.45 0.28 -56.19 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.53 -29.92 9.39 25.60 0.24 -29.68 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.18 9.31 4.57 85.56 0.39 9.70 16 10 N -0.47 -19.67 6.32 -932.99 -5.89 -25.56 16 11 C -0.01 -0.31 7.55 83.57 0.63 0.32 16 12 C 0.07 1.92 4.02 30.94 0.12 2.04 16 13 O -0.30 -8.86 9.62 -92.66 -0.89 -9.75 16 14 C 0.08 2.25 6.66 22.39 0.15 2.40 16 15 C -0.14 -3.17 8.82 22.57 0.20 -2.97 16 16 C -0.07 -1.53 5.74 -21.28 -0.12 -1.65 16 17 C -0.11 -1.53 9.77 22.32 0.22 -1.31 16 18 C -0.10 -0.93 9.96 22.05 0.22 -0.71 16 19 C -0.10 -1.01 9.94 22.04 0.22 -0.79 16 20 C -0.10 -1.67 9.98 22.34 0.22 -1.45 16 21 C 0.08 1.95 6.60 40.29 0.27 2.22 16 22 N -0.45 -12.51 10.30 -179.16 -1.85 -14.36 16 23 C 0.17 4.99 7.28 85.22 0.62 5.61 16 24 Cl -0.02 -0.59 28.61 -2.72 -0.08 -0.67 16 25 C 0.00 0.04 7.52 83.57 0.63 0.67 16 26 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 27 H 0.01 0.31 8.08 -2.39 -0.02 0.29 16 28 H -0.02 -1.15 7.30 -2.39 -0.02 -1.16 16 29 H 0.06 2.24 7.42 -2.39 -0.02 2.23 16 30 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 31 H 0.14 3.10 6.01 -2.38 -0.01 3.08 16 32 H 0.18 3.05 5.97 -2.91 -0.02 3.03 16 33 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.16 0.51 8.06 -2.91 -0.02 0.48 16 35 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 36 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.06 2.29 7.91 -2.38 -0.02 2.27 16 Total: -1.00 -70.00 339.58 -0.84 -70.84 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.09 Total: 4.72 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 4.47 Total: -15.14 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -7.45 Total: -96.10 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.89 Total: -9.75 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -70.00 -0.84 -70.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229128996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.169 kcal (2) G-P(sol) polarization free energy of solvation -70.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds