Wall clock time and date at job start Tue Mar 31 2020 12:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99865 * 2 1 4 4 H 1.48498 * 109.47071 * 269.99906 * 3 2 1 5 5 H 1.48497 * 109.47309 * 29.99981 * 3 2 1 6 6 H 1.48499 * 109.46944 * 150.00294 * 3 2 1 7 7 C 1.38809 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00206 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.65146 * 0.02562 * 9 7 2 11 11 C 1.54322 * 107.40531 * 181.10150 * 10 9 7 12 12 C 1.55159 * 102.94260 * 22.11427 * 11 10 9 13 13 H 1.09003 * 111.00650 * 82.56837 * 12 11 10 14 14 O 1.42896 * 111.00686 * 206.38431 * 12 11 10 15 15 C 1.35898 * 117.00377 * 203.70212 * 14 12 11 16 16 C 1.39821 * 119.62707 * 354.06379 * 15 14 12 17 17 C 1.36000 * 120.99925 * 179.72768 * 16 15 14 18 18 C 1.40626 * 119.82229 * 0.56454 * 17 16 15 19 19 N 1.33716 * 121.00961 * 179.67969 * 18 17 16 20 20 C 1.31116 * 121.36920 * 179.97438 * 19 18 17 21 21 C 1.39238 * 121.77484 * 0.04588 * 20 19 18 22 22 C 1.36734 * 119.91885 * 359.97381 * 21 20 19 23 23 Cl 1.73596 * 120.94051 * 180.02562 * 22 21 20 24 24 C 1.40941 * 118.12576 * 0.02562 * 22 21 20 25 25 C 1.36618 * 119.63230 * 174.33926 * 15 14 12 26 26 C 1.47746 * 125.82089 * 179.97438 * 9 7 2 27 27 H 0.97003 * 120.00028 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.88295 * 61.60678 * 10 9 7 29 29 H 1.09007 * 109.88132 * 300.59483 * 10 9 7 30 30 H 1.08998 * 110.72318 * 140.47213 * 11 10 9 31 31 H 1.08997 * 110.71898 * 263.75066 * 11 10 9 32 32 H 1.08001 * 119.50060 * 0.02562 * 16 15 14 33 33 H 1.07994 * 120.08161 * 180.26656 * 17 16 15 34 34 H 1.07994 * 119.11039 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.04333 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.20670 * 359.95642 * 25 15 14 37 37 H 1.09000 * 110.29524 * 37.02148 * 26 9 7 38 38 H 1.09001 * 110.43494 * 274.70335 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4520 -4.0434 0.0282 12 6 0.8472 -4.6577 0.6131 13 1 0.8529 -4.5965 1.7014 14 8 1.0163 -6.0082 0.1779 15 6 1.7847 -6.8155 0.9555 16 6 2.4652 -6.2758 2.0512 17 6 3.2374 -7.0590 2.8512 18 6 3.3675 -8.4310 2.5713 19 7 4.1256 -9.2217 3.3382 20 6 4.2515 -10.5018 3.0840 21 6 3.6060 -11.1023 2.0063 22 6 2.8152 -10.3521 1.1808 23 17 1.9976 -11.0734 -0.1700 24 6 2.6826 -8.9765 1.4575 25 6 1.8882 -8.1441 0.6544 26 6 1.9306 -3.7359 0.0005 27 1 -0.4850 0.8401 0.0004 28 1 -0.5537 -2.0846 -0.9027 29 1 -0.5585 -2.0497 0.8813 30 1 -1.3021 -4.2480 0.6789 31 1 -0.6365 -4.4181 -0.9786 32 1 2.3724 -5.2220 2.2685 33 1 3.7531 -6.6275 3.6962 34 1 4.8728 -11.1066 3.7278 35 1 3.7297 -12.1594 1.8226 36 1 1.3618 -8.5511 -0.1963 37 1 2.8301 -3.7465 0.6161 38 1 2.1629 -4.0488 -1.0174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230006603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:23 Heat of formation + Delta-G solvation = 43.537177 kcal Electronic energy + Delta-G solvation = -23252.794183 eV Core-core repulsion = 19701.379442 eV Total energy + Delta-G solvation = -3551.414742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.16910 -39.56193 -37.15472 -36.98574 -35.68495 -33.36260 -32.37128 -30.68741 -29.89154 -29.09350 -27.41550 -24.72589 -24.49794 -23.54138 -22.39801 -20.70126 -20.21041 -18.63342 -18.19477 -17.44927 -16.85959 -16.31360 -15.26175 -15.22041 -14.80593 -14.64054 -14.41691 -14.17992 -13.93988 -13.92258 -13.53701 -12.94579 -12.63994 -12.56689 -12.47381 -12.24401 -11.96339 -11.48743 -11.26825 -11.20870 -11.02213 -10.84355 -10.40834 -10.34508 -10.21899 -10.10860 -9.95832 -9.83798 -9.75852 -8.88665 -8.69100 -7.98056 -6.95968 -5.80187 -3.15233 0.06717 0.57105 1.64057 1.67803 2.68917 3.22221 3.36180 3.41552 3.43093 3.83476 4.04767 4.30184 4.42709 4.43984 4.64687 4.71620 4.95925 5.06910 5.13000 5.21610 5.24412 5.41072 5.46956 5.51610 5.56102 5.68155 5.79948 5.91048 6.08867 6.14835 6.16075 6.25666 6.34114 6.45013 6.48919 6.60880 7.44419 7.47562 7.48192 7.62569 7.72647 8.14105 9.11416 9.70801 10.35022 11.31502 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.025003 B = 0.002765 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.604532 B =10123.542680 C =10849.816026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.177 3.823 11 C -0.135 4.135 12 C 0.060 3.940 13 H 0.084 0.916 14 O -0.298 6.298 15 C 0.159 3.841 16 C -0.164 4.164 17 C -0.052 4.052 18 C 0.101 3.899 19 N -0.456 5.456 20 C 0.119 3.881 21 C -0.157 4.157 22 C 0.010 3.990 23 Cl -0.047 7.047 24 C -0.054 4.054 25 C -0.161 4.161 26 C 0.119 3.881 27 H 0.254 0.746 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.166 0.834 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.044 0.956 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.310 -22.128 4.602 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.330 5.330 10 C 0.053 3.947 11 C -0.174 4.174 12 C 0.003 3.997 13 H 0.102 0.898 14 O -0.210 6.210 15 C 0.113 3.887 16 C -0.184 4.184 17 C -0.070 4.070 18 C -0.020 4.020 19 N -0.163 5.163 20 C -0.054 4.054 21 C -0.178 4.178 22 C -0.025 4.025 23 Cl -0.018 7.018 24 C -0.057 4.057 25 C -0.181 4.181 26 C -0.008 4.008 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.166 0.834 33 H 0.163 0.837 34 H 0.183 0.817 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.062 0.938 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.462 -21.489 4.996 22.509 hybrid contribution -0.011 0.490 -0.774 0.916 sum 4.451 -20.998 4.222 21.876 Atomic orbital electron populations 1.69939 1.04924 1.25293 1.56723 1.24821 0.95769 0.97769 1.01888 0.86078 0.78581 0.83191 0.77660 1.21490 1.21577 1.20597 1.19051 0.90509 0.82043 1.44365 0.90248 1.44403 1.01633 0.99460 1.87511 1.21216 0.84472 0.87186 1.01860 1.23049 0.94525 0.98844 1.00947 1.23988 0.99197 0.77400 0.99071 0.89831 1.86168 1.64019 1.22980 1.47839 1.18772 0.89925 0.90416 0.89636 1.21468 0.99017 1.02094 0.95815 1.20666 0.96850 0.90415 0.99094 1.18750 0.96431 0.94527 0.92319 1.67949 1.15176 1.05466 1.27756 1.22822 0.96902 0.90847 0.94825 1.21823 0.98137 1.01766 0.96083 1.21009 0.97284 0.92415 0.91769 1.98392 1.77538 1.82356 1.43512 1.18255 0.98746 0.92015 0.96648 1.20055 1.04155 0.90947 1.02945 1.21990 0.94087 0.86549 0.98165 0.93569 0.93172 0.92962 0.91242 0.91004 0.83397 0.83749 0.81681 0.83643 0.84052 0.93806 0.95024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.39 10.31 55.49 0.57 -25.82 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -6.32 10.29 -15.06 -0.15 -6.47 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -14.99 3.41 -169.83 -0.58 -15.57 16 10 C 0.18 4.15 5.37 -3.07 -0.02 4.14 16 11 C -0.14 -2.47 6.69 -24.90 -0.17 -2.64 16 12 C 0.06 1.04 2.80 -24.60 -0.07 0.97 16 13 H 0.08 1.36 6.22 -51.93 -0.32 1.03 16 14 O -0.30 -4.85 9.93 -19.42 -0.19 -5.05 16 15 C 0.16 2.32 6.63 -39.57 -0.26 2.06 16 16 C -0.16 -2.19 8.83 -39.79 -0.35 -2.54 16 17 C -0.05 -0.64 9.98 -39.48 -0.39 -1.04 16 18 C 0.10 1.32 6.61 -84.84 -0.56 0.76 16 19 N -0.46 -5.48 10.34 -10.98 -0.11 -5.59 16 20 C 0.12 1.07 11.14 -17.49 -0.19 0.87 16 21 C -0.16 -1.35 9.84 -39.75 -0.39 -1.74 16 22 C 0.01 0.11 6.37 -39.10 -0.25 -0.14 16 23 Cl -0.05 -0.47 27.66 -51.86 -1.43 -1.90 16 24 C -0.05 -0.69 5.74 -106.78 -0.61 -1.30 16 25 C -0.16 -2.19 9.38 -39.39 -0.37 -2.55 16 26 C 0.12 2.41 6.85 -2.37 -0.02 2.40 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 29 H 0.05 1.33 7.37 -51.92 -0.38 0.95 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.15 1.95 5.53 -52.49 -0.29 1.66 16 33 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.14 1.82 7.06 -52.49 -0.37 1.45 16 37 H 0.04 0.85 7.74 -51.93 -0.40 0.45 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -30.26 330.66 -9.93 -40.19 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.24 Total: -0.40 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.90 Total: -7.49 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.12 Total: -46.98 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.19 Total: -5.05 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.43 Total: -1.90 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.26 -9.93 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230006603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.727 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds