Wall clock time and date at job start Tue Mar 31 2020 12:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99865 * 2 1 4 4 H 1.48498 * 109.47071 * 269.99906 * 3 2 1 5 5 H 1.48497 * 109.47309 * 29.99981 * 3 2 1 6 6 H 1.48499 * 109.46944 * 150.00294 * 3 2 1 7 7 C 1.38809 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00206 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.65146 * 0.02562 * 9 7 2 11 11 C 1.54322 * 107.40531 * 181.10150 * 10 9 7 12 12 C 1.55159 * 102.94260 * 22.11427 * 11 10 9 13 13 H 1.09003 * 111.00650 * 82.56837 * 12 11 10 14 14 O 1.42896 * 111.00686 * 206.38431 * 12 11 10 15 15 C 1.35898 * 117.00377 * 203.70212 * 14 12 11 16 16 C 1.39821 * 119.62707 * 354.06379 * 15 14 12 17 17 C 1.36000 * 120.99925 * 179.72768 * 16 15 14 18 18 C 1.40626 * 119.82229 * 0.56454 * 17 16 15 19 19 N 1.33716 * 121.00961 * 179.67969 * 18 17 16 20 20 C 1.31116 * 121.36920 * 179.97438 * 19 18 17 21 21 C 1.39238 * 121.77484 * 0.04588 * 20 19 18 22 22 C 1.36734 * 119.91885 * 359.97381 * 21 20 19 23 23 Cl 1.73596 * 120.94051 * 180.02562 * 22 21 20 24 24 C 1.40941 * 118.12576 * 0.02562 * 22 21 20 25 25 C 1.36618 * 119.63230 * 174.33926 * 15 14 12 26 26 C 1.47746 * 125.82089 * 179.97438 * 9 7 2 27 27 H 0.97003 * 120.00028 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.88295 * 61.60678 * 10 9 7 29 29 H 1.09007 * 109.88132 * 300.59483 * 10 9 7 30 30 H 1.08998 * 110.72318 * 140.47213 * 11 10 9 31 31 H 1.08997 * 110.71898 * 263.75066 * 11 10 9 32 32 H 1.08001 * 119.50060 * 0.02562 * 16 15 14 33 33 H 1.07994 * 120.08161 * 180.26656 * 17 16 15 34 34 H 1.07994 * 119.11039 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.04333 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.20670 * 359.95642 * 25 15 14 37 37 H 1.09000 * 110.29524 * 37.02148 * 26 9 7 38 38 H 1.09001 * 110.43494 * 274.70335 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4520 -4.0434 0.0282 12 6 0.8472 -4.6577 0.6131 13 1 0.8529 -4.5965 1.7014 14 8 1.0163 -6.0082 0.1779 15 6 1.7847 -6.8155 0.9555 16 6 2.4652 -6.2758 2.0512 17 6 3.2374 -7.0590 2.8512 18 6 3.3675 -8.4310 2.5713 19 7 4.1256 -9.2217 3.3382 20 6 4.2515 -10.5018 3.0840 21 6 3.6060 -11.1023 2.0063 22 6 2.8152 -10.3521 1.1808 23 17 1.9976 -11.0734 -0.1700 24 6 2.6826 -8.9765 1.4575 25 6 1.8882 -8.1441 0.6544 26 6 1.9306 -3.7359 0.0005 27 1 -0.4850 0.8401 0.0004 28 1 -0.5537 -2.0846 -0.9027 29 1 -0.5585 -2.0497 0.8813 30 1 -1.3021 -4.2480 0.6789 31 1 -0.6365 -4.4181 -0.9786 32 1 2.3724 -5.2220 2.2685 33 1 3.7531 -6.6275 3.6962 34 1 4.8728 -11.1066 3.7278 35 1 3.7297 -12.1594 1.8226 36 1 1.3618 -8.5511 -0.1963 37 1 2.8301 -3.7465 0.6161 38 1 2.1629 -4.0488 -1.0174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230006603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:23 Heat of formation + Delta-G solvation = 26.699412 kcal Electronic energy + Delta-G solvation = -23253.524324 eV Core-core repulsion = 19701.379442 eV Total energy + Delta-G solvation = -3552.144882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.10495 -40.73525 -38.54836 -37.84638 -36.87583 -34.39230 -34.12056 -31.57195 -31.39838 -30.45769 -29.01547 -26.56028 -25.39954 -24.60212 -23.34709 -22.24445 -21.89409 -19.76814 -19.19558 -18.95295 -18.11392 -17.31374 -16.76482 -16.45132 -16.24432 -15.84489 -15.66130 -15.34361 -15.22791 -14.73532 -14.69451 -14.26115 -14.17603 -13.91870 -13.63451 -13.44356 -13.33809 -12.95969 -12.77557 -12.57761 -12.37281 -12.16789 -12.04801 -12.03079 -11.83942 -11.55034 -11.42645 -11.12165 -10.74186 -10.67941 -9.77607 -9.03402 -8.94671 -7.88565 -5.25866 -0.79946 -0.31650 0.75994 0.85327 1.46759 1.48319 1.57090 1.78963 1.99285 2.48917 2.93194 3.23691 3.30677 3.47542 3.50906 3.60782 3.62051 3.81070 3.85941 3.93814 3.98863 4.12509 4.26306 4.43003 4.51292 4.61112 4.64386 4.77827 4.80913 4.89015 4.92845 4.93899 5.06008 5.18824 5.29274 5.41019 5.56623 5.57656 5.69673 6.12527 6.30280 6.80526 7.05061 7.69540 8.33458 9.21745 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.025003 B = 0.002765 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.604532 B =10123.542680 C =10849.816026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.062 4.062 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.246 4.246 8 H 0.084 0.916 9 N -0.623 5.623 10 C 0.185 3.815 11 C -0.123 4.123 12 C 0.081 3.919 13 H 0.097 0.903 14 O -0.305 6.305 15 C 0.134 3.866 16 C -0.171 4.171 17 C -0.051 4.051 18 C 0.088 3.912 19 N -0.480 5.480 20 C 0.131 3.869 21 C -0.141 4.141 22 C -0.004 4.004 23 Cl -0.042 7.042 24 C -0.071 4.071 25 C -0.158 4.158 26 C 0.117 3.883 27 H 0.249 0.751 28 H 0.015 0.985 29 H 0.025 0.975 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.146 0.854 33 H 0.159 0.841 34 H 0.208 0.792 35 H 0.182 0.818 36 H 0.143 0.857 37 H 0.053 0.947 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.836 -24.780 5.645 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.255 4.255 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.375 4.375 8 H 0.102 0.898 9 N -0.351 5.351 10 C 0.060 3.940 11 C -0.161 4.161 12 C 0.024 3.976 13 H 0.114 0.886 14 O -0.218 6.218 15 C 0.088 3.912 16 C -0.191 4.191 17 C -0.070 4.070 18 C -0.032 4.032 19 N -0.188 5.188 20 C -0.042 4.042 21 C -0.162 4.162 22 C -0.038 4.038 23 Cl -0.013 7.013 24 C -0.073 4.073 25 C -0.178 4.178 26 C -0.009 4.009 27 H 0.058 0.942 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.164 0.836 33 H 0.177 0.823 34 H 0.224 0.776 35 H 0.199 0.801 36 H 0.161 0.839 37 H 0.071 0.929 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.006 -24.177 6.039 25.633 hybrid contribution -0.365 1.037 -1.072 1.536 sum 5.641 -23.140 4.967 24.330 Atomic orbital electron populations 1.70151 1.06263 1.25549 1.57835 1.25661 0.96663 1.01012 1.02186 0.85053 0.77731 0.78927 0.77455 1.21409 1.21879 1.19212 1.19438 0.91072 0.83315 1.43655 0.89826 1.44676 1.02462 1.00599 1.87359 1.20953 0.83800 0.90421 0.98807 1.22868 0.96008 0.95033 1.02194 1.23589 0.96928 0.77780 0.99342 0.88552 1.86126 1.64988 1.22139 1.48543 1.18908 0.91097 0.90632 0.90525 1.21402 0.99678 1.02065 0.95979 1.20846 0.96388 0.90546 0.99171 1.18915 0.96775 0.94927 0.92624 1.68019 1.15815 1.06836 1.28175 1.23618 0.95758 0.90129 0.94702 1.22278 0.95952 1.03301 0.94622 1.21186 0.98094 0.91977 0.92585 1.98395 1.77540 1.82021 1.43328 1.18401 0.99068 0.93051 0.96826 1.20152 1.03976 0.90690 1.02970 1.22090 0.95392 0.85230 0.98185 0.94160 0.96714 0.95702 0.88647 0.90393 0.83627 0.82313 0.77590 0.80052 0.83895 0.92893 0.95711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.23 10.31 21.65 0.22 -56.00 16 2 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 3 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.25 -13.68 10.29 84.03 0.86 -12.81 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -31.79 3.41 -691.23 -2.35 -34.15 16 10 C 0.19 8.99 5.37 86.73 0.47 9.45 16 11 C -0.12 -4.48 6.69 31.78 0.21 -4.27 16 12 C 0.08 2.77 2.80 31.98 0.09 2.86 16 13 H 0.10 3.08 6.22 -2.39 -0.01 3.07 16 14 O -0.31 -9.83 9.93 -92.40 -0.92 -10.75 16 15 C 0.13 3.87 6.63 22.27 0.15 4.01 16 16 C -0.17 -4.52 8.83 22.13 0.20 -4.33 16 17 C -0.05 -1.23 9.98 22.33 0.22 -1.01 16 18 C 0.09 2.17 6.61 40.29 0.27 2.44 16 19 N -0.48 -10.31 10.34 -188.66 -1.95 -12.26 16 20 C 0.13 1.83 11.14 85.04 0.95 2.77 16 21 C -0.14 -1.87 9.84 22.16 0.22 -1.65 16 22 C 0.00 -0.07 6.37 22.58 0.14 0.08 16 23 Cl -0.04 -0.75 27.66 -2.72 -0.08 -0.82 16 24 C -0.07 -1.71 5.74 -21.26 -0.12 -1.84 16 25 C -0.16 -4.19 9.38 22.40 0.21 -3.98 16 26 C 0.12 4.79 6.85 86.78 0.59 5.39 16 27 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.01 0.80 7.51 -2.39 -0.02 0.78 16 29 H 0.02 1.32 7.37 -2.38 -0.02 1.30 16 30 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.15 3.81 5.53 -2.91 -0.02 3.80 16 33 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.21 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 36 H 0.14 3.61 7.06 -2.91 -0.02 3.59 16 37 H 0.05 2.06 7.74 -2.39 -0.02 2.04 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -67.20 330.66 2.97 -64.23 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.09 Total: 8.44 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 4.92 Total: -5.90 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -4.08 Total: -102.42 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.92 Total: -10.75 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.82 kcal Total: -67.20 2.97 -64.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230006603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.929 kcal (2) G-P(sol) polarization free energy of solvation -67.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds