Wall clock time and date at job start Tue Mar 31 2020 12:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00553 * 2 1 4 4 H 1.48496 * 109.47594 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47232 * 300.00602 * 3 2 1 6 6 H 1.48500 * 109.46785 * 60.00111 * 3 2 1 7 7 C 1.38816 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99959 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00121 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64774 * 0.02716 * 9 7 2 11 11 C 1.54910 * 104.92740 * 204.15927 * 10 9 7 12 12 C 1.55153 * 101.58137 * 322.92922 * 11 10 9 13 13 H 1.08994 * 110.72391 * 277.14489 * 12 11 10 14 14 O 1.42898 * 110.72402 * 154.04391 * 12 11 10 15 15 C 1.35887 * 117.00177 * 156.36641 * 14 12 11 16 16 C 1.39799 * 119.61742 * 5.23522 * 15 14 12 17 17 C 1.36088 * 120.99251 * 179.70491 * 16 15 14 18 18 Cl 1.73598 * 120.10100 * 180.26252 * 17 16 15 19 19 C 1.40761 * 119.79859 * 0.61149 * 17 16 15 20 20 N 1.33659 * 121.00827 * 179.62502 * 19 17 16 21 21 C 1.31074 * 121.33979 * 180.02562 * 20 19 17 22 22 C 1.39335 * 121.75172 * 359.97438 * 21 20 19 23 23 C 1.36574 * 119.92978 * 359.97438 * 22 21 20 24 24 C 1.40803 * 118.15392 * 0.04310 * 23 22 21 25 25 C 1.36626 * 119.61619 * 185.50875 * 15 14 12 26 26 C 1.47294 * 125.79578 * 180.02562 * 9 7 2 27 27 H 0.97003 * 119.99746 * 359.97438 * 1 2 3 28 28 H 1.08997 * 110.37252 * 85.26228 * 10 9 7 29 29 H 1.09007 * 110.36717 * 323.04705 * 10 9 7 30 30 H 1.08995 * 111.00968 * 81.00803 * 11 10 9 31 31 H 1.09004 * 111.00356 * 204.86047 * 11 10 9 32 32 H 1.08001 * 119.50720 * 0.02562 * 16 15 14 33 33 H 1.08005 * 119.12517 * 180.02562 * 21 20 19 34 34 H 1.07996 * 120.03711 * 180.02562 * 22 21 20 35 35 H 1.08000 * 120.92620 * 180.02562 * 23 22 21 36 36 H 1.08006 * 120.19114 * 359.97438 * 25 15 14 37 37 H 1.08999 * 109.85256 * 59.50001 * 26 9 7 38 38 H 1.08996 * 109.87277 * 298.36340 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1417 -2.5331 -0.0006 11 6 -0.4044 -3.9315 0.6121 12 6 0.7738 -4.7542 0.0272 13 1 0.5405 -5.0997 -0.9799 14 8 1.0911 -5.8579 0.8775 15 6 1.7207 -6.9171 0.3046 16 6 2.1231 -6.8412 -1.0321 17 6 2.7609 -7.8830 -1.6321 18 17 3.2566 -7.7612 -3.2913 19 6 3.0110 -9.0622 -0.9054 20 7 3.6289 -10.1028 -1.4728 21 6 3.8646 -11.2041 -0.8024 22 6 3.4854 -11.3464 0.5308 23 6 2.8507 -10.3209 1.1719 24 6 2.5989 -9.1396 0.4483 25 6 1.9480 -8.0459 1.0399 26 6 1.9293 -3.7316 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 -0.5275 -2.4865 -1.0189 29 1 -0.5996 -1.7578 0.6137 30 1 -0.3546 -3.8970 1.7003 31 1 -1.3627 -4.3302 0.2789 32 1 1.9295 -5.9405 -1.5956 33 1 4.3668 -12.0229 -1.2962 34 1 3.6938 -12.2662 1.0570 35 1 2.5500 -10.4136 2.2050 36 1 1.6296 -8.0960 2.0707 37 1 2.5556 -3.8559 0.8828 38 1 2.5253 -3.8699 -0.9025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231385607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:46 Heat of formation + Delta-G solvation = 44.054892 kcal Electronic energy + Delta-G solvation = -23365.320527 eV Core-core repulsion = 19813.928235 eV Total energy + Delta-G solvation = -3551.392292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16331 -39.58400 -37.20996 -36.68442 -35.47476 -33.53402 -32.38451 -30.61197 -29.87050 -29.08893 -27.39811 -24.74271 -24.52377 -23.49858 -22.41265 -20.59018 -20.34748 -18.62340 -18.15433 -17.41426 -16.83533 -16.22248 -15.36362 -15.28234 -14.87687 -14.70694 -14.53899 -14.24166 -13.78769 -13.66942 -13.35498 -13.13332 -12.55934 -12.51715 -12.49156 -12.01996 -11.80337 -11.45861 -11.26087 -11.04927 -10.98678 -10.85165 -10.52293 -10.49040 -10.20522 -10.04578 -9.91431 -9.74024 -9.68162 -8.84791 -8.74063 -7.97985 -6.95318 -5.73994 -3.16504 0.10271 0.58936 1.68353 1.95250 2.67859 3.20590 3.36479 3.42365 3.44774 3.83056 3.99485 4.41258 4.45454 4.49107 4.67647 4.70415 4.83593 5.01550 5.09047 5.18007 5.26744 5.41329 5.43082 5.50698 5.59450 5.65147 5.73076 5.86260 5.93384 6.14848 6.21847 6.32809 6.38559 6.43001 6.48437 6.58064 7.35571 7.43980 7.53640 7.66776 7.74238 8.24743 9.12352 9.72282 10.34982 11.30457 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.003014 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.458770 B = 9288.040497 C = 9893.422040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.917 3.083 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.151 3.849 11 C -0.135 4.135 12 C 0.063 3.937 13 H 0.080 0.920 14 O -0.294 6.294 15 C 0.160 3.840 16 C -0.163 4.163 17 C 0.026 3.974 18 Cl -0.040 7.040 19 C 0.095 3.905 20 N -0.453 5.453 21 C 0.114 3.886 22 C -0.163 4.163 23 C -0.066 4.066 24 C -0.050 4.050 25 C -0.155 4.155 26 C 0.117 3.883 27 H 0.253 0.747 28 H 0.018 0.982 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.037 0.963 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 -22.184 0.791 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.747 3.253 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.027 3.973 11 C -0.173 4.173 12 C 0.007 3.993 13 H 0.098 0.902 14 O -0.206 6.206 15 C 0.113 3.887 16 C -0.184 4.184 17 C -0.002 4.002 18 Cl -0.011 7.011 19 C -0.028 4.028 20 N -0.160 5.160 21 C -0.059 4.059 22 C -0.183 4.183 23 C -0.092 4.092 24 C -0.053 4.053 25 C -0.175 4.175 26 C -0.009 4.009 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.133 0.867 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.055 0.945 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.524 -21.707 -0.074 21.992 hybrid contribution 0.326 0.786 0.429 0.953 sum 3.850 -20.921 0.355 21.276 Atomic orbital electron populations 1.69756 1.04931 1.24905 1.57515 1.24801 0.95778 0.97811 1.02140 0.85957 0.78689 0.83302 0.77306 1.20445 1.21651 1.21620 1.19129 0.90623 0.82105 1.43304 0.90254 1.44429 1.01848 0.99332 1.87169 1.22019 0.84877 0.91816 0.98635 1.23220 0.94732 0.97642 1.01723 1.23825 0.97971 0.84104 0.93377 0.90232 1.86236 1.71218 1.24874 1.38288 1.18567 0.91620 0.88233 0.90303 1.21256 1.01600 1.00191 0.95368 1.20232 0.99365 0.93436 0.87159 1.98385 1.89632 1.97901 1.15164 1.18376 1.00278 0.93245 0.90875 1.67981 1.11070 0.99635 1.37321 1.22898 0.96324 0.95059 0.91603 1.21912 0.99822 1.00128 0.96427 1.21388 0.96208 0.91526 1.00076 1.18363 0.98444 0.95070 0.93390 1.20139 1.05079 0.90992 1.01247 1.21757 0.93672 0.86483 0.98999 0.93594 0.96447 0.86727 0.90623 0.91340 0.82926 0.82362 0.84412 0.84001 0.83870 0.94466 0.95440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.30 10.09 55.49 0.56 -25.74 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.22 -6.17 10.28 -15.06 -0.15 -6.32 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.16 3.40 -169.85 -0.58 -15.74 16 10 C 0.15 3.55 5.88 -2.53 -0.01 3.53 16 11 C -0.13 -2.48 6.81 -24.58 -0.17 -2.65 16 12 C 0.06 1.10 2.73 -24.90 -0.07 1.03 16 13 H 0.08 1.27 6.22 -51.93 -0.32 0.95 16 14 O -0.29 -4.77 9.85 -19.38 -0.19 -4.96 16 15 C 0.16 2.31 6.62 -39.58 -0.26 2.05 16 16 C -0.16 -2.34 8.56 -39.77 -0.34 -2.68 16 17 C 0.03 0.37 6.33 -39.40 -0.25 0.12 16 18 Cl -0.04 -0.55 28.52 -51.86 -1.48 -2.03 16 19 C 0.09 1.29 6.60 -84.79 -0.56 0.73 16 20 N -0.45 -5.78 9.81 -10.93 -0.11 -5.89 16 21 C 0.11 1.05 11.15 -17.47 -0.19 0.86 16 22 C -0.16 -1.23 10.03 -39.77 -0.40 -1.63 16 23 C -0.07 -0.58 9.90 -39.21 -0.39 -0.97 16 24 C -0.05 -0.60 5.74 -106.81 -0.61 -1.22 16 25 C -0.15 -1.93 9.69 -39.37 -0.38 -2.31 16 26 C 0.12 2.44 6.80 -2.92 -0.02 2.42 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.12 3.02 5.87 -51.92 -0.30 2.71 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.15 2.19 5.51 -52.49 -0.29 1.90 16 33 H 0.16 0.95 8.06 -52.48 -0.42 0.52 16 34 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 38 H 0.03 0.56 7.77 -51.93 -0.40 0.16 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -30.80 331.38 -9.98 -40.78 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -4.24 Total: -0.80 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.91 Total: -7.41 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.13 Total: -47.37 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.19 Total: -4.96 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.80 -9.98 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231385607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.830 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds