Wall clock time and date at job start Tue Mar 31 2020 12:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00553 * 2 1 4 4 H 1.48496 * 109.47594 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47232 * 300.00602 * 3 2 1 6 6 H 1.48500 * 109.46785 * 60.00111 * 3 2 1 7 7 C 1.38816 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99959 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00121 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64774 * 0.02716 * 9 7 2 11 11 C 1.54910 * 104.92740 * 204.15927 * 10 9 7 12 12 C 1.55153 * 101.58137 * 322.92922 * 11 10 9 13 13 H 1.08994 * 110.72391 * 277.14489 * 12 11 10 14 14 O 1.42898 * 110.72402 * 154.04391 * 12 11 10 15 15 C 1.35887 * 117.00177 * 156.36641 * 14 12 11 16 16 C 1.39799 * 119.61742 * 5.23522 * 15 14 12 17 17 C 1.36088 * 120.99251 * 179.70491 * 16 15 14 18 18 Cl 1.73598 * 120.10100 * 180.26252 * 17 16 15 19 19 C 1.40761 * 119.79859 * 0.61149 * 17 16 15 20 20 N 1.33659 * 121.00827 * 179.62502 * 19 17 16 21 21 C 1.31074 * 121.33979 * 180.02562 * 20 19 17 22 22 C 1.39335 * 121.75172 * 359.97438 * 21 20 19 23 23 C 1.36574 * 119.92978 * 359.97438 * 22 21 20 24 24 C 1.40803 * 118.15392 * 0.04310 * 23 22 21 25 25 C 1.36626 * 119.61619 * 185.50875 * 15 14 12 26 26 C 1.47294 * 125.79578 * 180.02562 * 9 7 2 27 27 H 0.97003 * 119.99746 * 359.97438 * 1 2 3 28 28 H 1.08997 * 110.37252 * 85.26228 * 10 9 7 29 29 H 1.09007 * 110.36717 * 323.04705 * 10 9 7 30 30 H 1.08995 * 111.00968 * 81.00803 * 11 10 9 31 31 H 1.09004 * 111.00356 * 204.86047 * 11 10 9 32 32 H 1.08001 * 119.50720 * 0.02562 * 16 15 14 33 33 H 1.08005 * 119.12517 * 180.02562 * 21 20 19 34 34 H 1.07996 * 120.03711 * 180.02562 * 22 21 20 35 35 H 1.08000 * 120.92620 * 180.02562 * 23 22 21 36 36 H 1.08006 * 120.19114 * 359.97438 * 25 15 14 37 37 H 1.08999 * 109.85256 * 59.50001 * 26 9 7 38 38 H 1.08996 * 109.87277 * 298.36340 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1417 -2.5331 -0.0006 11 6 -0.4044 -3.9315 0.6121 12 6 0.7738 -4.7542 0.0272 13 1 0.5405 -5.0997 -0.9799 14 8 1.0911 -5.8579 0.8775 15 6 1.7207 -6.9171 0.3046 16 6 2.1231 -6.8412 -1.0321 17 6 2.7609 -7.8830 -1.6321 18 17 3.2566 -7.7612 -3.2913 19 6 3.0110 -9.0622 -0.9054 20 7 3.6289 -10.1028 -1.4728 21 6 3.8646 -11.2041 -0.8024 22 6 3.4854 -11.3464 0.5308 23 6 2.8507 -10.3209 1.1719 24 6 2.5989 -9.1396 0.4483 25 6 1.9480 -8.0459 1.0399 26 6 1.9293 -3.7316 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 -0.5275 -2.4865 -1.0189 29 1 -0.5996 -1.7578 0.6137 30 1 -0.3546 -3.8970 1.7003 31 1 -1.3627 -4.3302 0.2789 32 1 1.9295 -5.9405 -1.5956 33 1 4.3668 -12.0229 -1.2962 34 1 3.6938 -12.2662 1.0570 35 1 2.5500 -10.4136 2.2050 36 1 1.6296 -8.0960 2.0707 37 1 2.5556 -3.8559 0.8828 38 1 2.5253 -3.8699 -0.9025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231385607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:46 Heat of formation + Delta-G solvation = 26.627897 kcal Electronic energy + Delta-G solvation = -23366.076218 eV Core-core repulsion = 19813.928235 eV Total energy + Delta-G solvation = -3552.147983 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.08694 -40.72725 -38.55532 -37.86480 -36.62275 -34.40954 -34.23582 -31.48372 -31.40311 -30.41551 -28.99703 -26.58445 -25.39156 -24.53770 -23.33509 -22.20613 -21.93784 -19.72043 -19.17463 -18.99763 -18.05365 -17.27220 -16.80008 -16.50597 -16.26477 -15.83063 -15.70740 -15.42052 -15.12317 -14.86662 -14.53726 -14.26599 -14.01614 -13.76548 -13.55718 -13.47558 -13.08674 -12.99405 -12.80168 -12.62838 -12.43509 -12.15811 -12.01715 -12.00510 -11.82190 -11.49245 -11.40222 -11.24804 -10.80007 -10.51325 -9.74605 -8.99180 -8.94749 -7.82460 -5.27893 -0.75969 -0.28272 0.85175 0.94239 1.46482 1.47001 1.57557 1.78234 1.99669 2.47362 2.98872 3.15513 3.28634 3.49252 3.61343 3.66451 3.70456 3.78327 3.87093 3.97683 4.01747 4.10666 4.23538 4.47623 4.56269 4.61207 4.64549 4.73690 4.80353 4.85294 4.94580 5.01427 5.05635 5.20211 5.35129 5.41507 5.54575 5.70645 5.72991 6.21912 6.27379 6.89304 7.05262 7.69618 8.32444 9.19825 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.003014 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.458770 B = 9288.040497 C = 9893.422040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.982 3.018 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.623 5.623 10 C 0.153 3.847 11 C -0.120 4.120 12 C 0.082 3.918 13 H 0.094 0.906 14 O -0.299 6.299 15 C 0.128 3.872 16 C -0.171 4.171 17 C 0.010 3.990 18 Cl -0.047 7.047 19 C 0.078 3.922 20 N -0.492 5.492 21 C 0.120 3.880 22 C -0.150 4.150 23 C -0.064 4.064 24 C -0.067 4.067 25 C -0.135 4.135 26 C 0.116 3.884 27 H 0.250 0.750 28 H 0.000 1.000 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.144 0.856 33 H 0.191 0.809 34 H 0.182 0.818 35 H 0.176 0.824 36 H 0.166 0.834 37 H 0.029 0.971 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 -25.284 2.076 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.810 3.190 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.350 5.350 10 C 0.028 3.972 11 C -0.158 4.158 12 C 0.026 3.974 13 H 0.112 0.888 14 O -0.212 6.212 15 C 0.082 3.918 16 C -0.191 4.191 17 C -0.017 4.017 18 Cl -0.018 7.018 19 C -0.043 4.043 20 N -0.200 5.200 21 C -0.052 4.052 22 C -0.169 4.169 23 C -0.089 4.089 24 C -0.069 4.069 25 C -0.155 4.155 26 C -0.010 4.010 27 H 0.060 0.940 28 H 0.018 0.982 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.161 0.839 33 H 0.208 0.792 34 H 0.199 0.801 35 H 0.193 0.807 36 H 0.183 0.817 37 H 0.048 0.952 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.352 -24.842 1.211 25.249 hybrid contribution 0.192 1.458 0.054 1.471 sum 4.543 -23.384 1.265 23.855 Atomic orbital electron populations 1.69994 1.06103 1.25266 1.58198 1.25626 0.96716 1.00892 1.02258 0.84961 0.77983 0.79151 0.76915 1.19359 1.21712 1.21493 1.19450 0.90985 0.83513 1.43178 0.90343 1.44711 1.02835 1.00349 1.87134 1.21803 0.83984 0.94074 0.97334 1.23014 0.96689 0.94813 1.01323 1.23441 0.95689 0.83965 0.94310 0.88794 1.86184 1.72211 1.24913 1.37909 1.18702 0.93710 0.88580 0.90776 1.21146 1.02375 1.00055 0.95569 1.20368 1.00136 0.94144 0.87085 1.98368 1.89765 1.97962 1.15714 1.18550 1.00757 0.93370 0.91660 1.68013 1.12737 1.00667 1.38585 1.23653 0.94491 0.94512 0.92592 1.22387 0.97699 1.01239 0.95624 1.21839 0.95423 0.90248 1.01423 1.18631 0.98855 0.96306 0.93151 1.20450 1.03095 0.90055 1.01862 1.21855 0.94939 0.85695 0.98517 0.94013 0.98225 0.89855 0.90723 0.88231 0.83870 0.79228 0.80066 0.80687 0.81673 0.95249 0.95270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.62 10.09 21.65 0.22 -55.40 16 2 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 3 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 6 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 7 C -0.24 -13.74 10.28 84.03 0.86 -12.88 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.62 -32.44 3.40 -691.29 -2.35 -34.79 16 10 C 0.15 7.40 5.88 86.86 0.51 7.92 16 11 C -0.12 -4.41 6.81 31.98 0.22 -4.19 16 12 C 0.08 2.88 2.73 31.78 0.09 2.96 16 13 H 0.09 3.01 6.22 -2.39 -0.01 2.99 16 14 O -0.30 -9.51 9.85 -92.28 -0.91 -10.42 16 15 C 0.13 3.63 6.62 22.27 0.15 3.78 16 16 C -0.17 -4.96 8.56 22.15 0.19 -4.77 16 17 C 0.01 0.30 6.33 22.39 0.14 0.44 16 18 Cl -0.05 -1.32 28.52 -2.72 -0.08 -1.40 16 19 C 0.08 2.05 6.60 40.34 0.27 2.31 16 20 N -0.49 -11.75 9.81 -188.50 -1.85 -13.60 16 21 C 0.12 1.78 11.15 85.07 0.95 2.73 16 22 C -0.15 -1.52 10.03 22.14 0.22 -1.30 16 23 C -0.06 -0.85 9.90 22.51 0.22 -0.62 16 24 C -0.07 -1.45 5.74 -21.28 -0.12 -1.57 16 25 C -0.14 -3.10 9.69 22.41 0.22 -2.88 16 26 C 0.12 4.93 6.80 86.68 0.59 5.52 16 27 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 28 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.08 4.58 5.87 -2.38 -0.01 4.57 16 30 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 32 H 0.14 4.27 5.51 -2.91 -0.02 4.26 16 33 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 35 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.03 1.29 8.06 -2.39 -0.02 1.27 16 38 H 0.03 1.23 7.77 -2.39 -0.02 1.21 16 Total: -1.00 -69.72 331.38 3.12 -66.60 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.09 Total: 6.97 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 4.97 Total: -5.61 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -3.98 Total: -103.78 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.91 Total: -10.42 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -69.72 3.12 -66.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231385607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.232 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds