Wall clock time and date at job start Tue Mar 31 2020 12:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99829 * 2 1 4 4 H 1.48495 * 109.46941 * 239.99964 * 3 2 1 5 5 H 1.48499 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46906 * 120.00086 * 3 2 1 7 7 C 1.38814 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99898 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99713 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.65081 * 0.04391 * 9 7 2 11 11 C 1.54374 * 107.29001 * 181.05814 * 10 9 7 12 12 C 1.55150 * 102.92084 * 22.13354 * 11 10 9 13 13 H 1.09000 * 111.00556 * 82.63946 * 12 11 10 14 14 O 1.42902 * 111.00765 * 206.45528 * 12 11 10 15 15 C 1.35572 * 117.00279 * 206.82099 * 14 12 11 16 16 C 1.40039 * 119.20852 * 180.02562 * 15 14 12 17 17 C 1.36299 * 119.89524 * 179.97438 * 16 15 14 18 18 C 1.40953 * 118.25812 * 0.04423 * 17 16 15 19 19 C 1.40382 * 121.29477 * 179.97438 * 18 17 16 20 20 C 1.36189 * 119.65932 * 180.02562 * 19 18 17 21 21 C 1.39285 * 120.87114 * 0.28438 * 20 19 18 22 22 C 1.36230 * 121.01790 * 359.39916 * 21 20 19 23 23 Cl 1.73595 * 120.13173 * 180.30918 * 22 21 20 24 24 C 1.40654 * 119.73325 * 0.61474 * 22 21 20 25 25 N 1.31530 * 119.21251 * 0.02562 * 15 14 12 26 26 C 1.47430 * 125.64981 * 179.97438 * 9 7 2 27 27 H 0.96992 * 120.00054 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.88046 * 300.43661 * 10 9 7 29 29 H 1.08994 * 109.88562 * 61.44487 * 10 9 7 30 30 H 1.09002 * 110.70129 * 263.79317 * 11 10 9 31 31 H 1.08997 * 110.75764 * 140.50614 * 11 10 9 32 32 H 1.07999 * 120.05088 * 359.97438 * 16 15 14 33 33 H 1.08001 * 120.87575 * 180.02562 * 17 16 15 34 34 H 1.08001 * 120.16542 * 0.04998 * 19 18 17 35 35 H 1.08002 * 119.56102 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.48838 * 179.72529 * 21 20 19 37 37 H 1.09002 * 110.36171 * 37.07206 * 26 9 7 38 38 H 1.08996 * 110.45954 * 274.79941 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 -0.0009 11 6 -0.4488 -4.0446 0.0269 12 6 0.8515 -4.6560 0.6121 13 1 0.8559 -4.5963 1.7004 14 8 1.0249 -6.0054 0.1751 15 6 1.7388 -6.8272 0.9832 16 6 1.9376 -8.1593 0.5995 17 6 2.6536 -8.9975 1.4010 18 6 3.1750 -8.4849 2.6060 19 6 3.9212 -9.2919 3.4793 20 6 4.4090 -8.7622 4.6353 21 6 4.1725 -7.4302 4.9668 22 6 3.4580 -6.6172 4.1396 23 17 3.1838 -4.9584 4.5717 24 6 2.9378 -7.1289 2.9371 25 7 2.2282 -6.3543 2.1087 26 6 1.9336 -3.7312 0.0005 27 1 -0.4850 0.8400 0.0004 28 1 -0.5583 -2.0520 0.8822 29 1 -0.5536 -2.0823 -0.9019 30 1 -0.6317 -4.4189 -0.9804 31 1 -1.2990 -4.2519 0.6767 32 1 1.5241 -8.5218 -0.3301 33 1 2.8169 -10.0275 1.1204 34 1 4.1079 -10.3273 3.2355 35 1 4.9825 -9.3846 5.3062 36 1 4.5661 -7.0345 5.8913 37 1 2.8328 -3.7405 0.6166 38 1 2.1686 -4.0430 -1.0171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231399757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:29 Heat of formation + Delta-G solvation = 44.110564 kcal Electronic energy + Delta-G solvation = -23662.132125 eV Core-core repulsion = 20110.742247 eV Total energy + Delta-G solvation = -3551.389878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.10415 -39.11985 -37.16322 -36.37037 -35.69455 -33.45234 -32.26584 -30.42257 -29.81484 -29.12447 -27.29909 -24.83965 -24.01864 -23.50975 -22.29981 -20.40807 -20.10035 -18.89197 -17.79178 -17.49628 -16.81484 -15.75963 -15.39767 -15.21155 -14.88755 -14.60911 -14.34903 -13.89876 -13.80699 -13.67698 -13.46461 -12.81544 -12.32920 -12.24201 -12.09554 -11.90994 -11.88049 -11.61457 -11.26956 -10.92299 -10.75975 -10.74459 -10.41018 -10.30153 -10.14344 -9.97738 -9.89733 -9.64118 -9.50132 -8.64624 -8.56936 -8.12065 -6.81947 -5.68445 -3.02151 0.17870 0.67777 1.73719 2.19276 2.72501 3.14740 3.44233 3.47829 3.49474 3.90065 4.04763 4.41737 4.52720 4.58420 4.63867 4.81247 4.95796 5.13906 5.26821 5.35865 5.44234 5.51363 5.62972 5.63544 5.73003 5.78792 5.86005 5.94869 6.06445 6.12475 6.29105 6.42883 6.46903 6.50084 6.70707 6.77118 7.49255 7.56812 7.60556 7.82326 7.84373 8.27226 9.24077 9.83776 10.48880 11.43503 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.003784 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.347603 B = 7396.898248 C = 8572.562857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.180 3.820 11 C -0.139 4.139 12 C 0.071 3.929 13 H 0.100 0.900 14 O -0.293 6.293 15 C 0.365 3.635 16 C -0.172 4.172 17 C -0.031 4.031 18 C -0.133 4.133 19 C -0.078 4.078 20 C -0.129 4.129 21 C -0.087 4.087 22 C -0.027 4.027 23 Cl -0.038 7.038 24 C 0.179 3.821 25 N -0.524 5.524 26 C 0.128 3.872 27 H 0.253 0.747 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.045 0.955 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.813 -22.133 7.446 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.056 3.944 11 C -0.178 4.178 12 C 0.015 3.985 13 H 0.118 0.882 14 O -0.197 6.197 15 C 0.173 3.827 16 C -0.193 4.193 17 C -0.056 4.056 18 C -0.136 4.136 19 C -0.097 4.097 20 C -0.147 4.147 21 C -0.108 4.108 22 C -0.055 4.055 23 Cl -0.009 7.009 24 C 0.056 3.944 25 N -0.251 5.251 26 C 0.001 3.999 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.063 0.937 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 5.460 -20.885 7.489 22.849 hybrid contribution 0.589 0.357 -0.074 0.693 sum 6.049 -20.528 7.414 22.648 Atomic orbital electron populations 1.69930 1.04868 1.25193 1.57124 1.24794 0.95738 0.97623 1.02190 0.86177 0.78449 0.83086 0.77933 1.21149 1.21556 1.21130 1.19015 0.90454 0.82164 1.43810 0.90429 1.44299 1.01630 0.99594 1.87296 1.21185 0.84516 0.87095 1.01646 1.23101 0.94913 0.99173 1.00587 1.23894 0.97985 0.76010 1.00629 0.88243 1.86258 1.65420 1.23636 1.44389 1.20137 0.87319 0.88549 0.86741 1.20995 1.03616 0.91639 1.03014 1.21260 0.93010 0.99766 0.91518 1.18630 1.03331 0.94164 0.97441 1.20974 0.95797 0.99346 0.93574 1.20728 1.01538 0.94688 0.97757 1.20823 0.97142 0.93523 0.99266 1.20541 1.02042 0.88075 0.94798 1.98419 1.95038 1.15346 1.92105 1.18114 0.94410 0.89208 0.92678 1.67794 1.15160 1.37164 1.04951 1.21773 0.94514 0.86289 0.97297 0.93662 0.93135 0.93257 0.91329 0.91495 0.83494 0.83390 0.84936 0.84936 0.84499 0.93682 0.95866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.59 10.31 55.49 0.57 -27.02 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.56 10.28 -15.06 -0.15 -6.71 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -16.15 3.39 -170.02 -0.58 -16.73 16 10 C 0.18 4.53 5.38 -3.04 -0.02 4.51 16 11 C -0.14 -2.78 6.69 -24.87 -0.17 -2.95 16 12 C 0.07 1.43 3.27 -24.58 -0.08 1.35 16 13 H 0.10 2.09 7.03 -51.93 -0.37 1.73 16 14 O -0.29 -5.16 9.91 -18.41 -0.18 -5.35 16 15 C 0.37 5.75 7.49 -17.01 -0.13 5.62 16 16 C -0.17 -1.99 9.95 -39.61 -0.39 -2.39 16 17 C -0.03 -0.29 9.88 -39.25 -0.39 -0.68 16 18 C -0.13 -1.50 5.74 -106.79 -0.61 -2.12 16 19 C -0.08 -0.65 9.77 -39.51 -0.39 -1.04 16 20 C -0.13 -1.04 9.95 -39.93 -0.40 -1.44 16 21 C -0.09 -0.89 9.71 -39.91 -0.39 -1.27 16 22 C -0.03 -0.36 6.33 -39.39 -0.25 -0.61 16 23 Cl -0.04 -0.59 28.52 -51.86 -1.48 -2.07 16 24 C 0.18 2.61 6.60 -84.83 -0.56 2.05 16 25 N -0.52 -8.86 8.07 -11.03 -0.09 -8.95 16 26 C 0.13 2.94 6.97 -2.52 -0.02 2.92 16 27 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.05 1.38 7.38 -51.93 -0.38 1.00 16 29 H 0.05 1.34 7.50 -51.93 -0.39 0.95 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -32.85 335.50 -10.25 -43.10 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -4.49 Total: -2.61 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -4.03 Total: -3.07 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.09 Total: -52.70 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.18 Total: -5.35 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.85 -10.25 -43.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231399757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.207 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds