Wall clock time and date at job start Tue Mar 31 2020 12:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99829 * 2 1 4 4 H 1.48495 * 109.46941 * 239.99964 * 3 2 1 5 5 H 1.48499 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46906 * 120.00086 * 3 2 1 7 7 C 1.38814 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99898 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99713 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.65081 * 0.04391 * 9 7 2 11 11 C 1.54374 * 107.29001 * 181.05814 * 10 9 7 12 12 C 1.55150 * 102.92084 * 22.13354 * 11 10 9 13 13 H 1.09000 * 111.00556 * 82.63946 * 12 11 10 14 14 O 1.42902 * 111.00765 * 206.45528 * 12 11 10 15 15 C 1.35572 * 117.00279 * 206.82099 * 14 12 11 16 16 C 1.40039 * 119.20852 * 180.02562 * 15 14 12 17 17 C 1.36299 * 119.89524 * 179.97438 * 16 15 14 18 18 C 1.40953 * 118.25812 * 0.04423 * 17 16 15 19 19 C 1.40382 * 121.29477 * 179.97438 * 18 17 16 20 20 C 1.36189 * 119.65932 * 180.02562 * 19 18 17 21 21 C 1.39285 * 120.87114 * 0.28438 * 20 19 18 22 22 C 1.36230 * 121.01790 * 359.39916 * 21 20 19 23 23 Cl 1.73595 * 120.13173 * 180.30918 * 22 21 20 24 24 C 1.40654 * 119.73325 * 0.61474 * 22 21 20 25 25 N 1.31530 * 119.21251 * 0.02562 * 15 14 12 26 26 C 1.47430 * 125.64981 * 179.97438 * 9 7 2 27 27 H 0.96992 * 120.00054 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.88046 * 300.43661 * 10 9 7 29 29 H 1.08994 * 109.88562 * 61.44487 * 10 9 7 30 30 H 1.09002 * 110.70129 * 263.79317 * 11 10 9 31 31 H 1.08997 * 110.75764 * 140.50614 * 11 10 9 32 32 H 1.07999 * 120.05088 * 359.97438 * 16 15 14 33 33 H 1.08001 * 120.87575 * 180.02562 * 17 16 15 34 34 H 1.08001 * 120.16542 * 0.04998 * 19 18 17 35 35 H 1.08002 * 119.56102 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.48838 * 179.72529 * 21 20 19 37 37 H 1.09002 * 110.36171 * 37.07206 * 26 9 7 38 38 H 1.08996 * 110.45954 * 274.79941 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 -0.0009 11 6 -0.4488 -4.0446 0.0269 12 6 0.8515 -4.6560 0.6121 13 1 0.8559 -4.5963 1.7004 14 8 1.0249 -6.0054 0.1751 15 6 1.7388 -6.8272 0.9832 16 6 1.9376 -8.1593 0.5995 17 6 2.6536 -8.9975 1.4010 18 6 3.1750 -8.4849 2.6060 19 6 3.9212 -9.2919 3.4793 20 6 4.4090 -8.7622 4.6353 21 6 4.1725 -7.4302 4.9668 22 6 3.4580 -6.6172 4.1396 23 17 3.1838 -4.9584 4.5717 24 6 2.9378 -7.1289 2.9371 25 7 2.2282 -6.3543 2.1087 26 6 1.9336 -3.7312 0.0005 27 1 -0.4850 0.8400 0.0004 28 1 -0.5583 -2.0520 0.8822 29 1 -0.5536 -2.0823 -0.9019 30 1 -0.6317 -4.4189 -0.9804 31 1 -1.2990 -4.2519 0.6767 32 1 1.5241 -8.5218 -0.3301 33 1 2.8169 -10.0275 1.1204 34 1 4.1079 -10.3273 3.2355 35 1 4.9825 -9.3846 5.3062 36 1 4.5661 -7.0345 5.8913 37 1 2.8328 -3.7405 0.6166 38 1 2.1686 -4.0430 -1.0171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231399757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:28 Heat of formation + Delta-G solvation = 23.373125 kcal Electronic energy + Delta-G solvation = -23663.031368 eV Core-core repulsion = 20110.742247 eV Total energy + Delta-G solvation = -3552.289121 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.06490 -40.38726 -38.57604 -37.54818 -36.88063 -34.35312 -34.30721 -31.55322 -31.01764 -30.56183 -29.10237 -26.68576 -25.13704 -24.52917 -23.16791 -22.18242 -21.86341 -19.93599 -19.19570 -18.68496 -18.29705 -16.97553 -16.72953 -16.50381 -16.21739 -15.92775 -15.74444 -15.30908 -15.01161 -14.74409 -14.38673 -14.19346 -14.11889 -13.95276 -13.53489 -13.10648 -12.95147 -12.86258 -12.70265 -12.67353 -12.35578 -12.20453 -12.11319 -11.87888 -11.80920 -11.62901 -11.40595 -11.30623 -10.75870 -10.57610 -9.54103 -9.07370 -8.98997 -7.90236 -5.27778 -0.63164 -0.20895 0.90190 1.23179 1.42388 1.46824 1.53060 1.88754 1.90958 2.46661 3.00142 3.07557 3.28249 3.59166 3.67090 3.73914 3.80735 3.82448 3.93019 4.11531 4.14224 4.25938 4.40897 4.47549 4.53505 4.66372 4.70541 4.79674 4.86997 4.89862 4.97356 5.02846 5.22740 5.36067 5.38520 5.41565 5.54613 5.64972 5.74600 6.10306 6.23212 6.81964 7.03214 7.67338 8.32017 9.20126 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.003784 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.347603 B = 7396.898248 C = 8572.562857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.060 4.060 3 Si 0.982 3.018 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.078 0.922 9 N -0.622 5.622 10 C 0.189 3.811 11 C -0.124 4.124 12 C 0.096 3.904 13 H 0.083 0.917 14 O -0.298 6.298 15 C 0.333 3.667 16 C -0.183 4.183 17 C -0.006 4.006 18 C -0.142 4.142 19 C -0.062 4.062 20 C -0.124 4.124 21 C -0.075 4.075 22 C -0.064 4.064 23 Cl -0.076 7.076 24 C 0.143 3.857 25 N -0.565 5.565 26 C 0.131 3.869 27 H 0.250 0.750 28 H 0.018 0.982 29 H 0.021 0.979 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.172 0.828 33 H 0.203 0.797 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.154 0.846 37 H 0.031 0.969 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.459 -26.112 7.885 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.253 4.253 3 Si 0.810 3.190 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.095 0.905 9 N -0.350 5.350 10 C 0.064 3.936 11 C -0.162 4.162 12 C 0.038 3.962 13 H 0.101 0.899 14 O -0.202 6.202 15 C 0.141 3.859 16 C -0.203 4.203 17 C -0.030 4.030 18 C -0.144 4.144 19 C -0.080 4.080 20 C -0.142 4.142 21 C -0.095 4.095 22 C -0.092 4.092 23 Cl -0.047 7.047 24 C 0.021 3.979 25 N -0.292 5.292 26 C 0.005 3.995 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.189 0.811 33 H 0.219 0.781 34 H 0.198 0.802 35 H 0.192 0.808 36 H 0.172 0.828 37 H 0.049 0.951 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.133 -24.910 7.945 27.102 hybrid contribution 0.227 1.370 -0.083 1.391 sum 7.359 -23.540 7.862 25.886 Atomic orbital electron populations 1.70147 1.06228 1.25687 1.57629 1.25678 0.96729 1.00980 1.01935 0.85107 0.77223 0.78466 0.78250 1.20046 1.21372 1.20483 1.19373 0.90873 0.83529 1.44148 0.90462 1.44581 1.02569 1.00533 1.87270 1.20934 0.83584 0.90398 0.98703 1.22915 0.95751 0.95269 1.02234 1.23254 0.96261 0.77437 0.99199 0.89906 1.86212 1.66795 1.22093 1.45146 1.20636 0.88382 0.89809 0.87053 1.21266 1.04610 0.89815 1.04569 1.21862 0.90084 1.01454 0.89595 1.19043 1.03594 0.92981 0.98826 1.21525 0.93244 1.00942 0.92300 1.21240 1.00901 0.93699 0.98338 1.21224 0.95022 0.94300 0.98952 1.20814 1.05101 0.87042 0.96235 1.98393 1.95509 1.18433 1.92360 1.18511 0.95406 0.91021 0.92940 1.67623 1.16413 1.39133 1.05982 1.21786 0.94980 0.85534 0.97199 0.94043 0.96350 0.96035 0.89619 0.89164 0.81096 0.78053 0.80209 0.80785 0.82824 0.95088 0.95667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.93 10.31 21.65 0.22 -58.71 16 2 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 3 Si 0.98 47.72 29.55 68.60 2.03 49.75 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.25 -15.13 10.28 84.03 0.86 -14.27 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 9 N -0.62 -35.14 3.39 -691.84 -2.35 -37.49 16 10 C 0.19 9.99 5.38 86.75 0.47 10.45 16 11 C -0.12 -5.05 6.69 31.80 0.21 -4.83 16 12 C 0.10 3.99 3.27 31.99 0.10 4.10 16 13 H 0.08 3.72 7.03 -2.39 -0.02 3.70 16 14 O -0.30 -10.63 9.91 -88.79 -0.88 -11.51 16 15 C 0.33 10.54 7.49 85.17 0.64 11.17 16 16 C -0.18 -3.81 9.95 22.25 0.22 -3.59 16 17 C -0.01 -0.08 9.88 22.48 0.22 0.14 16 18 C -0.14 -2.74 5.74 -21.27 -0.12 -2.87 16 19 C -0.06 -0.69 9.77 22.31 0.22 -0.48 16 20 C -0.12 -1.41 9.95 22.04 0.22 -1.19 16 21 C -0.07 -1.37 9.71 22.05 0.21 -1.15 16 22 C -0.06 -1.76 6.33 22.39 0.14 -1.62 16 23 Cl -0.08 -2.50 28.52 -2.72 -0.08 -2.57 16 24 C 0.14 4.14 6.60 40.26 0.27 4.41 16 25 N -0.57 -19.75 8.07 -302.10 -2.44 -22.19 16 26 C 0.13 6.31 6.97 86.86 0.61 6.92 16 27 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.02 1.07 7.38 -2.38 -0.02 1.05 16 29 H 0.02 1.24 7.50 -2.39 -0.02 1.22 16 30 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.20 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 35 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -78.43 335.50 2.32 -76.10 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.08 Total: 2.54 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 4.74 Total: 4.08 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -4.56 Total: -118.39 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.88 Total: -11.51 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Atomic # 17 Polarization: -2.50 SS G_CDS: -0.08 Total: -2.57 kcal Total: -78.43 2.32 -76.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231399757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.476 kcal (2) G-P(sol) polarization free energy of solvation -78.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds