Wall clock time and date at job start Tue Mar 31 2020 12:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65606 * 119.99684 * 2 1 4 4 O 1.42092 * 106.40318 * 311.46124 * 3 2 1 5 5 O 1.42098 * 106.40244 * 178.53757 * 3 2 1 6 6 C 1.76204 * 107.21555 * 65.00320 * 3 2 1 7 7 C 1.38392 * 119.85638 * 89.99657 * 6 3 2 8 8 C 1.37932 * 120.14686 * 179.97438 * 7 6 3 9 9 C 1.39609 * 119.84906 * 0.02562 * 8 7 6 10 10 C 1.47968 * 120.14233 * 179.97438 * 9 8 7 11 11 C 1.39890 * 119.45345 * 179.97438 * 10 9 8 12 12 C 1.36608 * 119.47374 * 180.02562 * 11 10 9 13 13 C 1.41301 * 118.40769 * 0.27797 * 12 11 10 14 14 C 1.41058 * 120.55359 * 179.72148 * 13 12 11 15 15 H 1.07998 * 120.00020 * 203.69252 * 14 13 12 16 16 C 1.40024 * 119.99546 * 23.69859 * 14 13 12 17 17 N 1.30781 * 120.00405 * 17.62031 * 16 14 13 18 18 Si 1.86806 * 119.99704 * 197.61611 * 16 14 13 19 19 H 1.48501 * 109.46704 * 90.00339 * 18 16 14 20 20 H 1.48498 * 109.47229 * 209.99885 * 18 16 14 21 21 H 1.48493 * 109.47109 * 330.00595 * 18 16 14 22 22 C 1.40955 * 118.89275 * 359.45783 * 13 12 11 23 23 N 1.31261 * 120.39908 * 0.55253 * 22 13 12 24 24 C 1.39610 * 119.71746 * 0.25507 * 9 8 7 25 25 C 1.37941 * 119.84670 * 359.48554 * 24 9 8 26 26 H 1.09000 * 109.47197 * 299.99396 * 1 2 3 27 27 H 1.08996 * 109.46991 * 60.00255 * 1 2 3 28 28 H 1.09003 * 109.46700 * 179.97438 * 1 2 3 29 29 H 0.97003 * 120.00723 * 179.97438 * 2 1 3 30 30 H 1.08003 * 119.92297 * 359.96023 * 7 6 3 31 31 H 1.07993 * 120.07594 * 180.02562 * 8 7 6 32 32 H 1.08010 * 120.26555 * 0.02562 * 11 10 9 33 33 H 1.07994 * 120.79656 * 180.02562 * 12 11 10 34 34 H 0.97000 * 120.00675 * 179.97438 * 17 16 14 35 35 H 1.08002 * 119.79610 * 180.24956 * 22 13 12 36 36 H 1.07999 * 120.07810 * 179.72625 * 24 9 8 37 37 H 1.07994 * 119.92679 * 180.23037 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7119 2.2330 -1.0215 5 8 3.6737 1.1005 0.0348 6 6 1.9377 2.2415 1.5254 7 6 2.7409 2.0132 2.6291 8 6 2.4686 2.6423 3.8260 9 6 1.3796 3.5106 3.9227 10 6 1.0813 4.1885 5.2036 11 6 -0.0132 5.0560 5.2842 12 6 -0.2887 5.6825 6.4665 13 6 0.5545 5.4322 7.5723 14 6 0.3152 6.0594 8.8129 15 1 1.1227 6.1855 9.5189 16 6 -0.9693 6.5184 9.1291 17 7 -2.0038 6.0786 8.4607 18 14 -1.2053 7.7589 10.5057 19 1 -1.1198 9.1344 9.9524 20 1 -2.5378 7.5584 11.1297 21 1 -0.1459 7.5703 11.5290 22 6 1.6354 4.5409 7.4167 23 7 1.8586 3.9633 6.2593 24 6 0.5699 3.7320 2.8071 25 6 0.8564 3.1006 1.6147 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9501 -0.8400 0.0004 30 1 3.5826 1.3407 2.5530 31 1 3.0964 2.4636 4.6864 32 1 -0.6354 5.2292 4.4185 33 1 -1.1284 6.3561 6.5527 34 1 -2.8938 6.3962 8.6800 35 1 2.2867 4.3359 8.2534 36 1 -0.2766 4.3991 2.8766 37 1 0.2331 3.2738 0.7499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240195047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:09 Heat of formation + Delta-G solvation = -29.611244 kcal Electronic energy + Delta-G solvation = -22926.285620 eV Core-core repulsion = 19373.742631 eV Total energy + Delta-G solvation = -3552.542989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.23916 -37.94310 -37.16767 -35.78730 -35.08232 -34.54578 -31.98820 -31.21576 -30.42313 -29.32290 -26.13039 -25.89580 -23.19044 -22.92441 -21.14241 -20.81438 -19.51078 -17.96962 -17.70734 -17.50500 -16.38824 -16.17195 -15.68632 -15.20598 -14.78055 -14.41183 -14.08102 -13.83542 -13.80574 -13.49352 -13.17059 -13.10410 -12.93946 -12.53395 -12.25338 -12.04543 -11.97015 -11.90626 -11.73313 -11.69740 -11.56142 -11.29119 -10.86147 -10.84315 -10.54536 -10.11815 -9.78095 -9.70999 -9.16062 -8.71075 -8.56851 -8.30485 -7.62143 -7.22272 -4.78583 0.48160 0.96001 1.72556 2.38781 2.77635 2.82750 2.85876 2.91294 3.12736 3.57004 3.73616 3.98346 4.40896 4.45778 4.87996 5.04624 5.13281 5.27034 5.29949 5.42016 5.54392 5.57834 5.67551 5.76854 5.87640 6.08091 6.22500 6.36004 6.44849 6.48436 6.51139 6.63307 6.74590 6.78995 6.94445 7.04935 7.22097 7.46540 7.54566 7.66184 8.09044 8.26590 8.37601 9.32826 9.63413 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.036277 B = 0.002537 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.649967 B =11032.133975 C =11384.402303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.124 6.124 3 S 2.701 3.299 4 O -0.966 6.966 5 O -0.968 6.968 6 C -0.713 4.713 7 C -0.017 4.017 8 C -0.141 4.141 9 C 0.086 3.914 10 C -0.035 4.035 11 C -0.111 4.111 12 C -0.149 4.149 13 C 0.071 3.929 14 C -0.419 4.419 15 H 0.092 0.908 16 C 0.069 3.931 17 N -0.765 5.765 18 Si 0.920 3.080 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.257 1.257 22 C -0.012 4.012 23 N -0.439 5.439 24 C -0.162 4.162 25 C -0.017 4.017 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.416 0.584 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.291 0.709 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 -7.047 -8.947 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.883 5.883 3 S 2.792 3.208 4 O -0.956 6.956 5 O -0.958 6.958 6 C -0.804 4.804 7 C -0.037 4.037 8 C -0.161 4.161 9 C 0.085 3.915 10 C -0.167 4.167 11 C -0.131 4.131 12 C -0.173 4.173 13 C 0.066 3.934 14 C -0.447 4.447 15 H 0.110 0.890 16 C -0.153 4.153 17 N -0.387 5.387 18 Si 0.743 3.257 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.180 1.180 22 C -0.180 4.180 23 N -0.146 5.146 24 C -0.182 4.182 25 C -0.036 4.036 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.249 0.751 30 H 0.148 0.852 31 H 0.155 0.845 32 H 0.122 0.878 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.452 -7.147 -9.774 12.117 hybrid contribution -1.225 0.867 1.562 2.166 sum -0.774 -6.280 -8.212 10.367 Atomic orbital electron populations 1.21473 0.78610 1.03975 1.02181 1.55364 1.16114 1.24457 1.92349 1.01496 0.72639 0.72520 0.74138 1.93551 1.78812 1.68350 1.54906 1.93562 1.31097 1.83569 1.87604 1.30312 1.09737 1.19277 1.21034 1.20710 0.95752 0.95836 0.91358 1.21362 0.98687 0.98263 0.97767 1.19039 0.91146 0.89763 0.91592 1.18732 0.98946 1.06708 0.92284 1.21329 0.96524 0.97360 0.97884 1.21337 1.02295 1.02389 0.91322 1.18684 0.91669 0.89471 0.93589 1.19841 0.95171 1.28933 1.00734 0.89039 1.26181 0.95411 0.95628 0.98080 1.69765 1.00449 1.32894 1.35611 0.86087 0.79012 0.80400 0.80198 1.18741 1.19792 1.18017 1.22501 1.01420 0.99912 0.94174 1.66890 1.26767 1.21641 0.99319 1.21282 1.01508 1.02946 0.92500 1.20634 0.93378 0.92134 0.97467 0.91883 0.91486 0.90173 0.75079 0.85152 0.84523 0.87801 0.85362 0.89788 0.84990 0.85286 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 11.14 59.85 0.67 1.32 16 2 N -1.12 -10.43 6.19 -16.63 -0.10 -10.53 16 3 S 2.70 35.33 5.73 -107.50 -0.62 34.71 16 4 O -0.97 -14.88 16.99 -57.17 -0.97 -15.85 16 5 O -0.97 -14.94 17.27 -57.17 -0.99 -15.93 16 6 C -0.71 -10.56 5.95 -39.47 -0.24 -10.80 16 7 C -0.02 -0.27 9.50 -39.64 -0.38 -0.64 16 8 C -0.14 -2.55 9.57 -39.18 -0.38 -2.92 16 9 C 0.09 1.67 5.88 -104.89 -0.62 1.06 16 10 C -0.04 -0.78 6.74 -82.75 -0.56 -1.34 16 11 C -0.11 -2.43 9.38 -39.55 -0.37 -2.80 16 12 C -0.15 -3.52 8.74 -39.01 -0.34 -3.86 16 13 C 0.07 1.71 5.59 -106.64 -0.60 1.12 16 14 C -0.42 -9.68 9.07 -37.84 -0.34 -10.03 16 15 H 0.09 1.98 7.91 -52.49 -0.41 1.56 16 16 C 0.07 1.51 5.17 -17.33 -0.09 1.42 16 17 N -0.77 -17.25 10.92 55.55 0.61 -16.65 16 18 Si 0.92 16.12 29.60 -169.99 -5.03 11.09 16 19 H -0.26 -4.60 7.11 56.52 0.40 -4.19 16 20 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 21 H -0.26 -4.45 7.11 56.52 0.40 -4.04 16 22 C -0.01 -0.29 10.97 -16.77 -0.18 -0.47 16 23 N -0.44 -10.20 9.39 -9.10 -0.09 -10.28 16 24 C -0.16 -2.74 9.42 -39.18 -0.37 -3.11 16 25 C -0.02 -0.25 9.50 -39.63 -0.38 -0.63 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.42 2.93 8.96 -34.47 -0.31 2.62 16 30 H 0.13 1.76 7.60 -52.48 -0.40 1.36 16 31 H 0.14 2.47 7.52 -52.49 -0.39 2.08 16 32 H 0.10 1.98 6.15 -52.48 -0.32 1.65 16 33 H 0.13 3.05 6.19 -52.49 -0.32 2.72 16 34 H 0.29 5.87 8.30 -40.82 -0.34 5.53 16 35 H 0.13 2.79 8.06 -52.49 -0.42 2.36 16 36 H 0.13 1.98 6.15 -52.49 -0.32 1.66 16 37 H 0.13 1.65 7.60 -52.49 -0.40 1.25 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -29.63 332.87 -10.05 -39.68 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.71 Total: 10.43 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -4.17 Total: -31.68 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.42 Total: -37.46 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.96 Total: -31.78 kcal Atomic # 14 Polarization: 16.12 SS G_CDS: -5.03 Total: 11.09 kcal Atomic # 16 Polarization: 35.33 SS G_CDS: -0.62 Total: 34.71 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.63 -10.05 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240195047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.069 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds