Wall clock time and date at job start Tue Mar 31 2020 12:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65606 * 119.99684 * 2 1 4 4 O 1.42092 * 106.40318 * 311.46124 * 3 2 1 5 5 O 1.42098 * 106.40244 * 178.53757 * 3 2 1 6 6 C 1.76204 * 107.21555 * 65.00320 * 3 2 1 7 7 C 1.38392 * 119.85638 * 89.99657 * 6 3 2 8 8 C 1.37932 * 120.14686 * 179.97438 * 7 6 3 9 9 C 1.39609 * 119.84906 * 0.02562 * 8 7 6 10 10 C 1.47968 * 120.14233 * 179.97438 * 9 8 7 11 11 C 1.39890 * 119.45345 * 179.97438 * 10 9 8 12 12 C 1.36608 * 119.47374 * 180.02562 * 11 10 9 13 13 C 1.41301 * 118.40769 * 0.27797 * 12 11 10 14 14 C 1.41058 * 120.55359 * 179.72148 * 13 12 11 15 15 H 1.07998 * 120.00020 * 203.69252 * 14 13 12 16 16 C 1.40024 * 119.99546 * 23.69859 * 14 13 12 17 17 N 1.30781 * 120.00405 * 17.62031 * 16 14 13 18 18 Si 1.86806 * 119.99704 * 197.61611 * 16 14 13 19 19 H 1.48501 * 109.46704 * 90.00339 * 18 16 14 20 20 H 1.48498 * 109.47229 * 209.99885 * 18 16 14 21 21 H 1.48493 * 109.47109 * 330.00595 * 18 16 14 22 22 C 1.40955 * 118.89275 * 359.45783 * 13 12 11 23 23 N 1.31261 * 120.39908 * 0.55253 * 22 13 12 24 24 C 1.39610 * 119.71746 * 0.25507 * 9 8 7 25 25 C 1.37941 * 119.84670 * 359.48554 * 24 9 8 26 26 H 1.09000 * 109.47197 * 299.99396 * 1 2 3 27 27 H 1.08996 * 109.46991 * 60.00255 * 1 2 3 28 28 H 1.09003 * 109.46700 * 179.97438 * 1 2 3 29 29 H 0.97003 * 120.00723 * 179.97438 * 2 1 3 30 30 H 1.08003 * 119.92297 * 359.96023 * 7 6 3 31 31 H 1.07993 * 120.07594 * 180.02562 * 8 7 6 32 32 H 1.08010 * 120.26555 * 0.02562 * 11 10 9 33 33 H 1.07994 * 120.79656 * 180.02562 * 12 11 10 34 34 H 0.97000 * 120.00675 * 179.97438 * 17 16 14 35 35 H 1.08002 * 119.79610 * 180.24956 * 22 13 12 36 36 H 1.07999 * 120.07810 * 179.72625 * 24 9 8 37 37 H 1.07994 * 119.92679 * 180.23037 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7119 2.2330 -1.0215 5 8 3.6737 1.1005 0.0348 6 6 1.9377 2.2415 1.5254 7 6 2.7409 2.0132 2.6291 8 6 2.4686 2.6423 3.8260 9 6 1.3796 3.5106 3.9227 10 6 1.0813 4.1885 5.2036 11 6 -0.0132 5.0560 5.2842 12 6 -0.2887 5.6825 6.4665 13 6 0.5545 5.4322 7.5723 14 6 0.3152 6.0594 8.8129 15 1 1.1227 6.1855 9.5189 16 6 -0.9693 6.5184 9.1291 17 7 -2.0038 6.0786 8.4607 18 14 -1.2053 7.7589 10.5057 19 1 -1.1198 9.1344 9.9524 20 1 -2.5378 7.5584 11.1297 21 1 -0.1459 7.5703 11.5290 22 6 1.6354 4.5409 7.4167 23 7 1.8586 3.9633 6.2593 24 6 0.5699 3.7320 2.8071 25 6 0.8564 3.1006 1.6147 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9501 -0.8400 0.0004 30 1 3.5826 1.3407 2.5530 31 1 3.0964 2.4636 4.6864 32 1 -0.6354 5.2292 4.4185 33 1 -1.1284 6.3561 6.5527 34 1 -2.8938 6.3962 8.6800 35 1 2.2867 4.3359 8.2534 36 1 -0.2766 4.3991 2.8766 37 1 0.2331 3.2738 0.7499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240195047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:08 Heat of formation + Delta-G solvation = -49.240276 kcal Electronic energy + Delta-G solvation = -22927.136799 eV Core-core repulsion = 19373.742631 eV Total energy + Delta-G solvation = -3553.394168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.78338 -39.45755 -38.32046 -36.94496 -36.20100 -35.84187 -33.50137 -32.84802 -31.84607 -30.90135 -27.53055 -26.79886 -24.72442 -24.40330 -22.69793 -22.36301 -20.54933 -19.44956 -19.04965 -18.59255 -17.75574 -17.42335 -17.09983 -16.67039 -16.04237 -15.71973 -15.33940 -15.31739 -14.97592 -14.75806 -14.60213 -14.42293 -14.01285 -13.78678 -13.71303 -13.60792 -13.23623 -13.21341 -13.19884 -13.12450 -12.76719 -12.49542 -12.28996 -12.16446 -11.80526 -11.74262 -11.36262 -10.66750 -10.49390 -10.33860 -10.05731 -9.99962 -9.27737 -8.85152 -6.53276 -0.62925 -0.37712 0.40871 0.78729 1.03359 1.37647 1.49909 1.52050 2.09037 2.11862 2.43276 2.70859 2.89915 3.36358 3.60811 3.66530 3.85418 3.97947 4.21009 4.28429 4.33595 4.45778 4.64275 4.70450 4.71676 4.80289 4.87106 4.93657 5.00558 5.03313 5.05646 5.13621 5.17737 5.25273 5.57777 5.69383 5.82568 5.93069 5.94725 6.14806 6.35926 6.56410 6.63847 7.57006 8.05058 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.036277 B = 0.002537 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.649967 B =11032.133975 C =11384.402303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.110 6.110 3 S 2.727 3.273 4 O -0.984 6.984 5 O -0.990 6.990 6 C -0.705 4.705 7 C -0.018 4.018 8 C -0.151 4.151 9 C 0.053 3.947 10 C -0.040 4.040 11 C -0.116 4.116 12 C -0.167 4.167 13 C 0.046 3.954 14 C -0.451 4.451 15 H 0.096 0.904 16 C 0.035 3.965 17 N -0.797 5.797 18 Si 0.992 3.008 19 H -0.260 1.260 20 H -0.265 1.265 21 H -0.253 1.253 22 C -0.034 4.034 23 N -0.453 5.453 24 C -0.160 4.160 25 C -0.014 4.014 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.429 0.571 30 H 0.153 0.847 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.299 0.701 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.925 -7.908 -10.658 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.873 5.873 3 S 2.816 3.184 4 O -0.974 6.974 5 O -0.980 6.980 6 C -0.793 4.793 7 C -0.037 4.037 8 C -0.170 4.170 9 C 0.051 3.949 10 C -0.173 4.173 11 C -0.136 4.136 12 C -0.191 4.191 13 C 0.041 3.959 14 C -0.478 4.478 15 H 0.114 0.886 16 C -0.185 4.185 17 N -0.420 5.420 18 Si 0.812 3.188 19 H -0.185 1.185 20 H -0.189 1.189 21 H -0.177 1.177 22 C -0.200 4.200 23 N -0.160 5.160 24 C -0.180 4.180 25 C -0.034 4.034 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.128 0.872 29 H 0.266 0.734 30 H 0.170 0.830 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.111 -8.016 -11.458 13.985 hybrid contribution -1.007 0.913 1.770 2.232 sum -1.117 -7.103 -9.688 12.065 Atomic orbital electron populations 1.21765 0.77183 1.06124 1.02388 1.55017 1.16942 1.23618 1.91709 1.00733 0.71971 0.72730 0.72981 1.93532 1.79102 1.69668 1.55103 1.93534 1.32909 1.83968 1.87564 1.30796 1.08629 1.18308 1.21521 1.20941 0.96436 0.95647 0.90648 1.21396 0.98444 0.98579 0.98599 1.19097 0.93023 0.91439 0.91292 1.19266 0.98526 1.06403 0.93149 1.21598 0.96836 0.96906 0.98272 1.21394 1.02512 1.03126 0.92100 1.18967 0.92273 0.90231 0.94458 1.20084 0.96298 1.30554 1.00898 0.88635 1.27004 0.94500 0.96708 1.00279 1.69791 1.01135 1.33895 1.37144 0.85021 0.79125 0.77595 0.77073 1.18468 1.18932 1.17653 1.22711 1.02050 1.00472 0.94806 1.66927 1.27412 1.21984 0.99665 1.21477 1.01316 1.02920 0.92301 1.20985 0.93553 0.91175 0.97640 0.91932 0.91097 0.87221 0.73445 0.82984 0.85451 0.85158 0.86055 0.88920 0.84027 0.84008 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 11.14 127.77 1.42 2.26 16 2 N -1.11 -16.65 6.19 -206.54 -1.28 -17.93 16 3 S 2.73 63.23 5.73 -56.49 -0.32 62.90 16 4 O -0.98 -27.30 16.99 -128.00 -2.18 -29.47 16 5 O -0.99 -27.97 17.27 -128.00 -2.21 -30.18 16 6 C -0.70 -19.02 5.95 22.34 0.13 -18.88 16 7 C -0.02 -0.52 9.50 22.23 0.21 -0.31 16 8 C -0.15 -5.38 9.57 22.53 0.22 -5.16 16 9 C 0.05 2.04 5.88 -20.04 -0.12 1.92 16 10 C -0.04 -1.83 6.74 41.95 0.28 -1.55 16 11 C -0.12 -5.19 9.38 22.29 0.21 -4.98 16 12 C -0.17 -8.17 8.74 22.64 0.20 -7.97 16 13 C 0.05 2.30 5.59 -21.17 -0.12 2.19 16 14 C -0.45 -21.64 9.07 23.40 0.21 -21.43 16 15 H 0.10 4.31 7.91 -2.91 -0.02 4.28 16 16 C 0.03 1.53 5.17 85.28 0.44 1.97 16 17 N -0.80 -36.77 10.92 21.84 0.24 -36.53 16 18 Si 0.99 33.10 29.60 68.60 2.03 35.13 16 19 H -0.26 -8.50 7.11 99.48 0.71 -7.80 16 20 H -0.27 -8.40 7.11 99.48 0.71 -7.70 16 21 H -0.25 -8.21 7.11 99.48 0.71 -7.50 16 22 C -0.03 -1.68 10.97 85.44 0.94 -0.74 16 23 N -0.45 -21.78 9.39 -182.71 -1.72 -23.50 16 24 C -0.16 -5.15 9.42 22.53 0.21 -4.94 16 25 C -0.01 -0.39 9.50 22.24 0.21 -0.18 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 28 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.43 4.48 8.96 -96.74 -0.87 3.61 16 30 H 0.15 3.78 7.60 -2.91 -0.02 3.76 16 31 H 0.13 4.70 7.52 -2.91 -0.02 4.68 16 32 H 0.13 4.92 6.15 -2.91 -0.02 4.90 16 33 H 0.12 6.00 6.19 -2.91 -0.02 5.99 16 34 H 0.30 12.25 8.30 -92.71 -0.77 11.48 16 35 H 0.14 6.33 8.06 -2.91 -0.02 6.30 16 36 H 0.14 4.09 6.15 -2.91 -0.02 4.07 16 37 H 0.16 3.42 7.60 -2.91 -0.02 3.40 16 Total: -1.00 -65.00 332.87 -0.72 -65.72 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.26 Total: 31.69 kcal Atomic # 6 Polarization: -62.27 SS G_CDS: 4.45 Total: -57.82 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.75 Total: -77.96 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -4.39 Total: -59.65 kcal Atomic # 14 Polarization: 33.10 SS G_CDS: 2.03 Total: 35.13 kcal Atomic # 16 Polarization: 63.23 SS G_CDS: -0.32 Total: 62.90 kcal Total: -65.00 -0.72 -65.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240195047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.480 kcal (2) G-P(sol) polarization free energy of solvation -64.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds