Wall clock time and date at job start Tue Mar 31 2020 12:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 S 1.65607 * 120.00002 * 2 1 4 4 O 1.42105 * 106.40023 * 311.45727 * 3 2 1 5 5 O 1.42095 * 106.40299 * 178.54098 * 3 2 1 6 6 C 1.76193 * 107.21766 * 64.99969 * 3 2 1 7 7 C 1.38326 * 119.88074 * 90.00110 * 6 3 2 8 8 C 1.38009 * 120.12130 * 179.97438 * 7 6 3 9 9 C 1.39348 * 119.88258 * 0.02562 * 8 7 6 10 10 C 1.48383 * 120.12351 * 180.02562 * 9 8 7 11 11 C 1.40036 * 120.82218 * 0.02562 * 10 9 8 12 12 C 1.38511 * 119.42395 * 179.97438 * 11 10 9 13 13 N 1.31478 * 121.14406 * 0.02562 * 12 11 10 14 14 C 1.33647 * 121.79298 * 359.97438 * 13 12 11 15 15 C 1.41426 * 119.77696 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99912 * 187.07025 * 15 14 13 17 17 C 1.40033 * 119.99947 * 7.07167 * 15 14 13 18 18 N 1.30741 * 120.00144 * 182.56910 * 17 15 14 19 19 Si 1.86809 * 120.00169 * 2.56807 * 17 15 14 20 20 H 1.48499 * 109.47093 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.46992 * 300.00230 * 19 17 15 22 22 H 1.48506 * 109.46797 * 59.99784 * 19 17 15 23 23 C 1.39302 * 120.82129 * 180.25959 * 10 9 8 24 24 C 1.39339 * 119.75254 * 0.27717 * 9 8 7 25 25 C 1.38022 * 119.88015 * 359.40140 * 24 9 8 26 26 H 1.09001 * 109.47130 * 299.99874 * 1 2 3 27 27 H 1.08997 * 109.47016 * 60.00438 * 1 2 3 28 28 H 1.09001 * 109.46837 * 179.97438 * 1 2 3 29 29 H 0.97005 * 120.00202 * 180.02562 * 2 1 3 30 30 H 1.08001 * 119.93523 * 0.02562 * 7 6 3 31 31 H 1.07999 * 120.06212 * 180.02562 * 8 7 6 32 32 H 1.07996 * 120.28944 * 359.97438 * 11 10 9 33 33 H 1.07998 * 119.42664 * 179.97438 * 12 11 10 34 34 H 0.96999 * 119.99741 * 354.84870 * 18 17 15 35 35 H 1.08005 * 120.58299 * 0.02562 * 23 10 9 36 36 H 1.08005 * 120.06092 * 179.72486 * 24 9 8 37 37 H 1.07992 * 119.94464 * 180.31827 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2329 -1.0217 5 8 3.6737 1.1004 0.0347 6 6 1.9378 2.2415 1.5253 7 6 2.7402 2.0138 2.6287 8 6 2.4669 2.6439 3.8258 9 6 1.3799 3.5105 3.9218 10 6 1.0814 4.1912 5.2060 11 6 1.8816 3.9763 6.3350 12 6 1.5768 4.6273 7.5190 13 7 0.5490 5.4431 7.6014 14 6 -0.2457 5.6825 6.5539 15 6 -1.3402 6.5676 6.6904 16 1 -2.0503 6.6767 5.8841 17 6 -1.5031 7.3027 7.8711 18 7 -2.5419 8.0830 8.0174 19 14 -0.2361 7.1685 9.2374 20 1 -0.6364 8.0401 10.3710 21 1 -0.1546 5.7598 9.7001 22 1 1.0901 7.5993 8.7266 23 6 -0.0046 5.0562 5.3198 24 6 0.5712 3.7313 2.8088 25 6 0.8576 3.1010 1.6148 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9500 -0.8401 -0.0004 30 1 3.5827 1.3422 2.5531 31 1 3.0943 2.4657 4.6866 32 1 2.7290 3.3088 6.2829 33 1 2.1937 4.4612 8.3898 34 1 -3.1600 8.2108 7.2808 35 1 -0.6479 5.2448 4.4730 36 1 -0.2753 4.3985 2.8789 37 1 0.2346 3.2754 0.7501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240202004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:05 Heat of formation + Delta-G solvation = -33.020194 kcal Electronic energy + Delta-G solvation = -23099.495872 eV Core-core repulsion = 19546.805060 eV Total energy + Delta-G solvation = -3552.690812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.64760 -38.31915 -37.41121 -36.02535 -35.28673 -34.12182 -33.03014 -31.34508 -30.45322 -29.38926 -26.31364 -25.80271 -24.04779 -23.01810 -21.42429 -20.67698 -19.77588 -18.50758 -18.23470 -17.72225 -16.53815 -16.24031 -15.63542 -15.45957 -15.02799 -14.41308 -14.34251 -14.10376 -14.00047 -13.65360 -13.37695 -13.31769 -13.13260 -12.74231 -12.56155 -12.34130 -12.25925 -12.16763 -12.00301 -11.89931 -11.54628 -10.91011 -10.88909 -10.60365 -10.23465 -9.98603 -9.91468 -9.74608 -9.42499 -9.08626 -8.20739 -8.15275 -7.84701 -7.39051 -4.96389 0.18886 0.56317 1.30623 2.32852 2.36359 2.85935 3.45624 3.54009 3.57627 3.79019 3.94569 4.18478 4.34298 4.51661 4.69381 4.72529 4.77652 4.88212 5.11689 5.26969 5.29293 5.34731 5.40282 5.46093 5.52211 5.63392 5.81107 5.96626 6.05596 6.09839 6.19733 6.28888 6.50746 6.58731 6.73481 6.81101 7.01089 7.17458 7.29431 7.43439 7.89254 8.08182 8.44502 9.28187 9.85520 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.029674 B = 0.002856 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.354659 B = 9801.315143 C =10340.462939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.122 6.122 3 S 2.701 3.299 4 O -0.960 6.960 5 O -0.963 6.963 6 C -0.692 4.692 7 C -0.019 4.019 8 C -0.135 4.135 9 C 0.039 3.961 10 C -0.005 4.005 11 C -0.301 4.301 12 C 0.154 3.846 13 N -0.570 5.570 14 C 0.246 3.754 15 C -0.466 4.466 16 H 0.083 0.917 17 C 0.042 3.958 18 N -0.797 5.797 19 Si 1.155 2.845 20 H -0.331 1.331 21 H -0.278 1.278 22 H -0.293 1.293 23 C -0.229 4.229 24 C -0.135 4.135 25 C -0.021 4.021 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.418 0.582 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.284 0.716 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 -14.736 -12.045 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.791 3.209 4 O -0.949 6.949 5 O -0.953 6.953 6 C -0.780 4.780 7 C -0.039 4.039 8 C -0.154 4.154 9 C 0.039 3.961 10 C -0.010 4.010 11 C -0.324 4.324 12 C -0.007 4.007 13 N -0.289 5.289 14 C 0.123 3.877 15 C -0.498 4.498 16 H 0.101 0.899 17 C -0.180 4.180 18 N -0.418 5.418 19 Si 0.990 3.010 20 H -0.264 1.264 21 H -0.206 1.206 22 H -0.221 1.221 23 C -0.252 4.252 24 C -0.154 4.154 25 C -0.041 4.041 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.251 0.749 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.127 0.873 33 H 0.149 0.851 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.155 0.845 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.921 -13.296 -10.532 17.966 hybrid contribution -0.498 -1.185 -1.797 2.209 sum 5.423 -14.482 -12.329 19.777 Atomic orbital electron populations 1.21506 0.78400 1.04230 1.02247 1.55330 1.16236 1.24391 1.92190 1.01634 0.72741 0.72606 0.73969 1.93579 1.78731 1.68354 1.54278 1.93580 1.30889 1.83477 1.87366 1.30643 1.08480 1.17501 1.21387 1.20775 0.96026 0.95907 0.91171 1.21413 0.98059 0.97778 0.98100 1.19390 0.92202 0.91560 0.92988 1.18711 0.95566 0.95621 0.91152 1.21190 1.05435 1.11271 0.94497 1.22077 0.92205 0.90685 0.95699 1.66558 1.09235 1.22592 1.30543 1.18598 0.91332 0.90800 0.86944 1.20847 1.07087 1.18617 1.03232 0.89891 1.27893 0.98375 0.89944 1.01773 1.70654 1.08582 1.28156 1.34419 0.81810 0.72134 0.75630 0.71451 1.26447 1.20598 1.22064 1.21812 1.00367 1.03995 0.99000 1.21472 1.00728 1.01001 0.92207 1.20813 0.93470 0.91936 0.97846 0.91929 0.91293 0.89947 0.74867 0.84460 0.84568 0.87295 0.85059 0.90441 0.87119 0.84535 0.84407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 11.14 59.84 0.67 1.17 16 2 N -1.12 -8.27 6.19 -16.64 -0.10 -8.37 16 3 S 2.70 29.67 5.73 -107.50 -0.62 29.05 16 4 O -0.96 -13.06 17.00 -57.17 -0.97 -14.03 16 5 O -0.96 -12.80 17.27 -57.17 -0.99 -13.79 16 6 C -0.69 -8.51 5.95 -39.51 -0.24 -8.74 16 7 C -0.02 -0.24 9.51 -39.63 -0.38 -0.62 16 8 C -0.13 -1.90 9.45 -39.25 -0.37 -2.27 16 9 C 0.04 0.64 5.88 -104.90 -0.62 0.02 16 10 C 0.00 -0.10 5.90 -104.65 -0.62 -0.71 16 11 C -0.30 -5.71 9.52 -38.81 -0.37 -6.08 16 12 C 0.15 3.18 11.17 -17.60 -0.20 2.99 16 13 N -0.57 -13.81 4.54 -11.20 -0.05 -13.86 16 14 C 0.25 6.09 6.39 -85.02 -0.54 5.55 16 15 C -0.47 -12.16 9.58 -37.70 -0.36 -12.52 16 16 H 0.08 2.14 8.05 -52.49 -0.42 1.71 16 17 C 0.04 1.11 5.52 -17.34 -0.10 1.01 16 18 N -0.80 -21.04 13.65 55.55 0.76 -20.28 16 19 Si 1.16 27.49 25.56 -169.99 -4.34 23.14 16 20 H -0.33 -7.81 7.11 56.52 0.40 -7.41 16 21 H -0.28 -6.56 6.67 56.52 0.38 -6.18 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 C -0.23 -5.01 9.22 -38.34 -0.35 -5.36 16 24 C -0.14 -2.01 9.45 -39.25 -0.37 -2.38 16 25 C -0.02 -0.27 9.51 -39.63 -0.38 -0.65 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.42 2.16 8.96 -34.48 -0.31 1.85 16 30 H 0.14 1.41 7.60 -52.49 -0.40 1.01 16 31 H 0.14 1.71 6.29 -52.49 -0.33 1.38 16 32 H 0.11 1.72 6.32 -52.49 -0.33 1.38 16 33 H 0.13 2.27 8.06 -52.49 -0.42 1.84 16 34 H 0.28 7.14 8.72 -40.82 -0.36 6.78 16 35 H 0.11 2.22 6.33 -52.48 -0.33 1.89 16 36 H 0.14 1.94 6.29 -52.48 -0.33 1.61 16 37 H 0.14 1.47 7.60 -52.49 -0.40 1.07 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -32.25 327.61 -9.32 -41.57 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.72 Total: 0.23 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -4.22 Total: -28.59 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.60 Total: -42.52 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -1.96 Total: -27.82 kcal Atomic # 14 Polarization: 27.49 SS G_CDS: -4.34 Total: 23.14 kcal Atomic # 16 Polarization: 29.67 SS G_CDS: -0.62 Total: 29.05 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.25 -9.32 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240202004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.551 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds