Wall clock time and date at job start Tue Mar 31 2020 12:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 S 1.65607 * 120.00002 * 2 1 4 4 O 1.42105 * 106.40023 * 311.45727 * 3 2 1 5 5 O 1.42095 * 106.40299 * 178.54098 * 3 2 1 6 6 C 1.76193 * 107.21766 * 64.99969 * 3 2 1 7 7 C 1.38326 * 119.88074 * 90.00110 * 6 3 2 8 8 C 1.38009 * 120.12130 * 179.97438 * 7 6 3 9 9 C 1.39348 * 119.88258 * 0.02562 * 8 7 6 10 10 C 1.48383 * 120.12351 * 180.02562 * 9 8 7 11 11 C 1.40036 * 120.82218 * 0.02562 * 10 9 8 12 12 C 1.38511 * 119.42395 * 179.97438 * 11 10 9 13 13 N 1.31478 * 121.14406 * 0.02562 * 12 11 10 14 14 C 1.33647 * 121.79298 * 359.97438 * 13 12 11 15 15 C 1.41426 * 119.77696 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99912 * 187.07025 * 15 14 13 17 17 C 1.40033 * 119.99947 * 7.07167 * 15 14 13 18 18 N 1.30741 * 120.00144 * 182.56910 * 17 15 14 19 19 Si 1.86809 * 120.00169 * 2.56807 * 17 15 14 20 20 H 1.48499 * 109.47093 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.46992 * 300.00230 * 19 17 15 22 22 H 1.48506 * 109.46797 * 59.99784 * 19 17 15 23 23 C 1.39302 * 120.82129 * 180.25959 * 10 9 8 24 24 C 1.39339 * 119.75254 * 0.27717 * 9 8 7 25 25 C 1.38022 * 119.88015 * 359.40140 * 24 9 8 26 26 H 1.09001 * 109.47130 * 299.99874 * 1 2 3 27 27 H 1.08997 * 109.47016 * 60.00438 * 1 2 3 28 28 H 1.09001 * 109.46837 * 179.97438 * 1 2 3 29 29 H 0.97005 * 120.00202 * 180.02562 * 2 1 3 30 30 H 1.08001 * 119.93523 * 0.02562 * 7 6 3 31 31 H 1.07999 * 120.06212 * 180.02562 * 8 7 6 32 32 H 1.07996 * 120.28944 * 359.97438 * 11 10 9 33 33 H 1.07998 * 119.42664 * 179.97438 * 12 11 10 34 34 H 0.96999 * 119.99741 * 354.84870 * 18 17 15 35 35 H 1.08005 * 120.58299 * 0.02562 * 23 10 9 36 36 H 1.08005 * 120.06092 * 179.72486 * 24 9 8 37 37 H 1.07992 * 119.94464 * 180.31827 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2329 -1.0217 5 8 3.6737 1.1004 0.0347 6 6 1.9378 2.2415 1.5253 7 6 2.7402 2.0138 2.6287 8 6 2.4669 2.6439 3.8258 9 6 1.3799 3.5105 3.9218 10 6 1.0814 4.1912 5.2060 11 6 1.8816 3.9763 6.3350 12 6 1.5768 4.6273 7.5190 13 7 0.5490 5.4431 7.6014 14 6 -0.2457 5.6825 6.5539 15 6 -1.3402 6.5676 6.6904 16 1 -2.0503 6.6767 5.8841 17 6 -1.5031 7.3027 7.8711 18 7 -2.5419 8.0830 8.0174 19 14 -0.2361 7.1685 9.2374 20 1 -0.6364 8.0401 10.3710 21 1 -0.1546 5.7598 9.7001 22 1 1.0901 7.5993 8.7266 23 6 -0.0046 5.0562 5.3198 24 6 0.5712 3.7313 2.8088 25 6 0.8576 3.1010 1.6148 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9500 -0.8401 -0.0004 30 1 3.5827 1.3422 2.5531 31 1 3.0943 2.4657 4.6866 32 1 2.7290 3.3088 6.2829 33 1 2.1937 4.4612 8.3898 34 1 -3.1600 8.2108 7.2808 35 1 -0.6479 5.2448 4.4730 36 1 -0.2753 4.3985 2.8789 37 1 0.2346 3.2754 0.7501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240202004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:03 Heat of formation + Delta-G solvation = -55.506749 kcal Electronic energy + Delta-G solvation = -23100.470962 eV Core-core repulsion = 19546.805060 eV Total energy + Delta-G solvation = -3553.665902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.02652 -39.76019 -38.38488 -37.00582 -35.93989 -35.87021 -34.51169 -32.66947 -31.94821 -30.75108 -27.56742 -26.84909 -25.39251 -24.29276 -22.83353 -22.26174 -20.66009 -20.24105 -19.20052 -18.63082 -17.70609 -17.43445 -16.96880 -16.83001 -16.19701 -15.84396 -15.50268 -15.36292 -14.97053 -14.86412 -14.75733 -14.61763 -14.33566 -14.07186 -13.99125 -13.79316 -13.39546 -13.26822 -13.19504 -12.86332 -12.67485 -12.54305 -12.15456 -11.95728 -11.80911 -11.63398 -11.42259 -11.30237 -10.55823 -10.13148 -9.94686 -9.69199 -9.60395 -9.28502 -6.87467 -0.78591 -0.54003 0.24483 0.62628 0.85159 1.61124 1.69751 2.02267 2.06589 2.41564 2.46728 2.66605 2.79616 3.26699 3.49595 3.54575 3.69161 3.83692 3.92988 4.21521 4.23425 4.25937 4.39860 4.50343 4.64997 4.66761 4.67205 4.84752 4.88221 4.92345 4.99583 5.01735 5.14655 5.23219 5.31013 5.36305 5.59348 5.73706 5.81678 5.97348 6.10905 6.29586 6.59426 7.51858 7.92604 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.029674 B = 0.002856 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.354659 B = 9801.315143 C =10340.462939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.108 6.108 3 S 2.724 3.276 4 O -0.985 6.985 5 O -0.983 6.983 6 C -0.684 4.684 7 C -0.020 4.020 8 C -0.130 4.130 9 C 0.006 3.994 10 C 0.003 3.997 11 C -0.275 4.275 12 C 0.134 3.866 13 N -0.593 5.593 14 C 0.235 3.765 15 C -0.510 4.510 16 H 0.065 0.935 17 C 0.015 3.985 18 N -0.830 5.830 19 Si 1.190 2.810 20 H -0.332 1.332 21 H -0.275 1.275 22 H -0.295 1.295 23 C -0.254 4.254 24 C -0.143 4.143 25 C -0.023 4.023 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.431 0.569 30 H 0.165 0.835 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.169 0.831 34 H 0.281 0.719 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.172 -18.034 -13.218 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.871 5.871 3 S 2.813 3.187 4 O -0.975 6.975 5 O -0.973 6.973 6 C -0.771 4.771 7 C -0.039 4.039 8 C -0.148 4.148 9 C 0.006 3.994 10 C -0.004 4.004 11 C -0.297 4.297 12 C -0.025 4.025 13 N -0.313 5.313 14 C 0.111 3.889 15 C -0.543 4.543 16 H 0.083 0.917 17 C -0.202 4.202 18 N -0.453 5.453 19 Si 1.022 2.978 20 H -0.266 1.266 21 H -0.202 1.202 22 H -0.223 1.223 23 C -0.276 4.276 24 C -0.162 4.162 25 C -0.042 4.042 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.128 0.872 29 H 0.267 0.733 30 H 0.183 0.817 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.186 0.814 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.150 0.850 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.567 -16.614 -11.699 22.052 hybrid contribution -1.075 -0.511 -1.710 2.083 sum 7.492 -17.125 -13.409 23.004 Atomic orbital electron populations 1.21763 0.77248 1.06187 1.02320 1.54993 1.16857 1.23644 1.91619 1.00881 0.72086 0.72750 0.73027 1.93553 1.79129 1.69759 1.55047 1.93551 1.32491 1.83856 1.87408 1.30992 1.07553 1.16544 1.22031 1.21123 0.96554 0.95769 0.90448 1.21624 0.97109 0.96682 0.99430 1.19314 0.94441 0.93698 0.91987 1.19073 0.94104 0.94170 0.93019 1.21770 1.05243 1.09417 0.93239 1.22804 0.91724 0.90050 0.97886 1.66471 1.10294 1.23731 1.30757 1.18710 0.91156 0.90762 0.88247 1.20780 1.08726 1.21350 1.03429 0.91671 1.28579 0.98957 0.89663 1.02981 1.70673 1.09723 1.30285 1.34613 0.81348 0.70798 0.75494 0.70145 1.26612 1.20245 1.22337 1.21888 1.02033 1.05318 0.98330 1.21555 1.00627 1.01219 0.92795 1.21022 0.93965 0.91550 0.97694 0.91867 0.91343 0.87152 0.73253 0.81725 0.82617 0.82978 0.81366 0.90874 0.86738 0.85031 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 11.14 127.77 1.42 2.05 16 2 N -1.11 -12.45 6.19 -206.55 -1.28 -13.73 16 3 S 2.72 51.64 5.73 -56.49 -0.32 51.32 16 4 O -0.99 -24.50 17.00 -128.00 -2.18 -26.67 16 5 O -0.98 -23.01 17.27 -128.00 -2.21 -25.22 16 6 C -0.68 -14.62 5.95 22.31 0.13 -14.49 16 7 C -0.02 -0.42 9.51 22.24 0.21 -0.21 16 8 C -0.13 -3.14 9.45 22.48 0.21 -2.93 16 9 C 0.01 0.18 5.88 -20.04 -0.12 0.06 16 10 C 0.00 0.09 5.90 -19.88 -0.12 -0.02 16 11 C -0.27 -9.43 9.52 22.77 0.22 -9.21 16 12 C 0.13 5.18 11.17 84.81 0.95 6.12 16 13 N -0.59 -28.42 4.54 -189.36 -0.86 -29.28 16 14 C 0.24 11.94 6.39 40.20 0.26 12.19 16 15 C -0.51 -28.16 9.58 23.49 0.23 -27.94 16 16 H 0.07 3.65 8.05 -2.91 -0.02 3.63 16 17 C 0.01 0.81 5.52 85.29 0.47 1.28 16 18 N -0.83 -46.26 13.65 21.84 0.30 -45.96 16 19 Si 1.19 57.12 25.56 68.60 1.75 58.88 16 20 H -0.33 -15.73 7.11 99.48 0.71 -15.02 16 21 H -0.28 -12.82 6.67 99.48 0.66 -12.16 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 23 C -0.25 -11.22 9.22 23.07 0.21 -11.01 16 24 C -0.14 -4.05 9.45 22.48 0.21 -3.84 16 25 C -0.02 -0.54 9.51 22.24 0.21 -0.33 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.07 0.65 8.10 -2.39 -0.02 0.63 16 28 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.43 2.82 8.96 -96.74 -0.87 1.95 16 30 H 0.17 2.56 7.60 -2.91 -0.02 2.53 16 31 H 0.16 3.06 6.29 -2.91 -0.02 3.04 16 32 H 0.15 3.89 6.32 -2.91 -0.02 3.88 16 33 H 0.17 5.13 8.06 -2.91 -0.02 5.10 16 34 H 0.28 15.12 8.72 -92.71 -0.81 14.31 16 35 H 0.11 4.80 6.33 -2.91 -0.02 4.79 16 36 H 0.13 3.77 6.29 -2.91 -0.02 3.75 16 37 H 0.16 3.00 7.60 -2.91 -0.02 2.98 16 Total: -1.00 -71.80 327.61 -0.12 -71.91 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 0.18 Total: 7.03 kcal Atomic # 6 Polarization: -52.77 SS G_CDS: 4.50 Total: -48.27 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -1.84 Total: -88.97 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -4.39 Total: -51.90 kcal Atomic # 14 Polarization: 57.12 SS G_CDS: 1.75 Total: 58.88 kcal Atomic # 16 Polarization: 51.64 SS G_CDS: -0.32 Total: 51.32 kcal Total: -71.80 -0.12 -71.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240202004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.408 kcal (2) G-P(sol) polarization free energy of solvation -71.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds